_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 0.0
 Query name: gi|226874933|ref|NP_001152892.1| selenide, water dikinase 2 [Macaca mulatta]
 Query range: 1-451  (total 451)

 Target: /data/www-rg/seblastian_results/367103275/tempfiles/temptarget.fasta
 Chromosome: KN979696.1:subseq_2502301,101373_ Strand: -
 Positions:
 -Exon 1  50105        51457

 Redox box: no

Query   MAEASATGACGEAMAAVAAAEGSSGPAGLTVGRSFSNYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQETLLKLLAGLTRPDVRPQLGRGLVGGQEEAS
        ||||||||||||||||/|||||| ||||||/||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Target  MAEASATGACGEAMAAMAAAEGSWGPAGLTLGRSFSNYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQETLLKLLAGLTRPDVRPPLGRSLVGGQEEAS
        agggtgaggtgggaggagggggttgcggtacgcattatcctgccgtgcacatccagttgaagtgtagccgaccaccggcaccggccccgcacgggcgggt
        tcaccccgcggactcctcccagcggccgtctgggtcaagctacactgtgcgggtcgtcgtaggggatcaacttattcgtcgcatgcctgggttggaaacc
        ggacgagcccaggggagaagaccgcggcgtgcgcccccgccgcgggcccgcggggccccggcaccgcgggggcacggaggggcggcggcgcggccgaggc
                                                                      *                                     

Query   QEAGMPTGAGSSPTFPALGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMSEEEREKVTPLMVK
        ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  QEASMPTGAGSSPTFPALGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMSEEEREKVTPLMVK
        cggaacagggtacatcgcgagagttgaccacggctcgcaagtttctgggctaagcagtgagcagctgagaagtgaataccagacaaagggcgagaccaga
        aacgtccgcgcgcctcctgtgtacgttctgaggtcttaccattacttaacattggtcgcattgatactgtcagaatttttgtgagtgaaagaatccttta
        gaccgaaagccccctacgccggctccccggcacgagggcgcctccggatccgggcattccggtccccggttgtccgggaccccgtgtggatagagacgca
                                                                                                            

Query   GFRDAAEEGGTAVTGGQTVVNPWIIIGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVKMVVSREEVELAYQEAMFNMAT
        |||||||||||||||||||||||||/|||||||||||||||||||||||||||||||||||||||||||||||||||||||/||||||||||||||||||
Target  GFRDAAEEGGTAVTGGQTVVNPWIIVGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVKMVISREEVELAYQEAMFNMAT
        gtcgggggggaggaggcaggactaagggggaggtccagtaacgaggggggcgtaactgacgggagcctcgacgataagaagataggggcgtcggataaga
        gtgaccaaggcctcggacttacgtttggtccttgacaatttcagcttgattttcactgcatctacaagtaacaggaatatttcgaatatcaaacttatcc
        ctgtcggaaggagctgaggcctgtactatcggacgatgcaggcccctgcgggacaaaacgttctccaggtttaagtaagggccaaggggctgacgctgtc
                                                                                                            

Query   LNRTAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPVIAKMAAVSKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGE
        ||||||||||||||||||||||||||||||||||||||||||||||||/||||||||||||||||||||||||||| |||||||||||||||||||||||
Target  LNRTAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAVSKASGRFGLLQGTSAETSGGFLICLPREQAARFCSEIKSSKYGE
        caaagggtacatagcggagaagtgacgctcacgaccaaggttgacaccaagaagggaagagctgcccgatggatggtcatccagcggctttgaattatgg
        tagcccgttactacacccatcgtgttgacaatcaaagaatctttaatcttcatcctgacgggtgttagcccaccggtttgtcgaaccgtgcataccaaga
        ccattatagcattctgcatcgctctggccgctaaaaatagctttttggatcggtcccgctagtgttaacatgctgatgttgaaaggtcttcacaccgcag
                                                                                                            

Query   GHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATAAALAPDSSNASSEPSS
        |||||||||||||||||||||||||||||||||||||||||||||||||||
Target  GHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATAAALAPDSSNASSEPSS
        gccgtaggaggagacagcaagaccgaggcccggagggcgcgatagttgcat
        gaacgttgttaagagccgttaacgttattcggccccctccagcacccacgc
        tcaggctctgagacagcgctcggattacattgtattttttctatcctgtcg
                                                           
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 566 ; UGA-SECIS: 1730

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KN979696.1:subseq_2502301,101373_ Strand = - Positions = 49538 - 49463
 Found by:  Infernal (score=25.72) Covels (score=22.9)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 1, 0
 Free Energy = -17.11

         ..(((((((.......((((((((((.(((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         (((({((((---(...([[{(((((((.((...................)))))))))}]])......-.-)))))}))))
 target  UUGGUCUCU---GUUAUGACGUCUCUCCCUCUAAACUCCGUUAAGGACUGGGAGAGGCAGAGCAAGCC-U-CAGAGCCCAG
                         ****            ^^^                       ****