_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-25
 Query name: gi|226531093|ref|NP_001152772.1| glutathione peroxidase 3 precursor [Macaca mulatta] >gi|190359358|sp|Q4AEH4.2|GPX3_MACFU RecName: Full=Glutathione peroxidase 3; Short=GPx-3; Short=GSHPx-3; AltName: Full=Plasma glutathione peroxidase; Short=GPx-P; Short=GSHPx-P; Flags: Precursor [Macaca fuscata fuscata] >gi|71891635|dbj|BAE17016.1| glutathione peroxidase 3 [Macaca fuscata]
 Query range: 1-226  (total 226)

 Target: /data/www-rg/seblastian_results/863909809/tempfiles/temptarget.fasta
 Chromosome: KN985879.1:subseq_5311955,102808_ Strand: +
 Positions:
 -Exon 1  45329        45415
 -Exon 2  50003        50156
 -Exon 3  51564        51681
 -Exon 4  52103        52202
 -Exon 5  52590        52808

 Redox box: no

Query   MARLLQASCLLSLLLAGFLPQSRGQDKSK <---Intron---> MDCHGGVSGTIYEYGALTIDGEEYIPFKQYIGKYVLFVNVASYUGLTGQYIE <-
        |||||||||||||||||||||||||/||| <   4587bp   > ||||||/||||||||||||||||||||||| ||||||||||/|||||||||| < 
Target  MARLLQASCLLSLLLAGFLPQSRGQEKSK                MDCHGGMSGTIYEYGALTIDGEEYIPFKQYTGKYVLFVNVATYUGLTGQYIE   
        agccccgttcctcccggtcccacgcgata                agtcggaagaatgtggcaaggggtactactagatgctgaggattgcagctag   
        tcgttaccgttctttcgttcagggaaaca                tagaggtggctaaagctctagaaatctaaacgaattttatccaggtcgaat    
        gcgggggccgccgcgccccggcgaagggg                gccttcgtcctcgcacccttgggccccggctcaccctccgcccacggcgct    
                                                                                                *           

Query   --Intron---> LNALQEELAPFGLVLLGFPCNQFGKQEPGENSEILPSLK <---Intron---> YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFL
          1407bp   > ||||||||||||||/|||||||||||||||||||||||| <   421bp    > ||||||||||||||||||||||||||||||||
Target               LNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPSLK                YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFL
                     cagccggcgctgcgacgtctactgacgcggatgaccaca                tgccgggtgcatcctgagggaggagcattatc
                    atactaaatcctgttttgtcgaatgaaacgaacattcgta                atgcgggttcatattaagatagaaaaatactt
                    agtaagagtagctcctcctcccataagaacgcagctccc                gtcaatactcttcgctgagtgtagaggacctca
                                                                                                            

Query   K <---Intron---> NSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPVMRWHHRTTISNVKMDILSYMRRQAALGVKRK
        | <   387bp    > |||||||||||||||||||||||||||||||||||||||||/|||||||||||||||||||||||||||/|||
Target  K                NSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTISNVKMDILSYMRRQAALGLKRK
        a                attccatgccgatgccttgcaagcgactatgatcggcggacaactcccaaaaagaagacttaaccggcgcaaa
        a                acgccccattgccagttgactataatggataatttgcagtcttggaagcctgatatattcatggacctgtaga
        g                ccttccggcgtatccctgacggcccccgctggcgggattatcgcgccgcgccccggccgccggggacggcggg
                                                                                                  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 669 ; UGA-SECIS: 1128

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KN985879.1:subseq_5311955,102808_ Strand = + Positions = 53478 - 53551
 Found by:  Infernal (score=24.25) Covels (score=27.8)
 Stem2 length = 8   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -18.06

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(((([((---((..([[((({(((({((......--.........))}))))})))]])......-.))))]))))..
 target  GGUGGCAUC---UUCAUGAGGGAGGGGCCCAAAGCC--CUUGUGGGCGGACCUCCCCUGAGCCUGUC-UGAGGGGCCAGC
                         ****          ^^^                        ****