genewise output
Score 378.32 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000038_2.0    1 MFQQFQASCLVLFFLVGFAQQTLKPQNRK                     
                     M++QFQA CLV +FLVGFAQQTLKPQN+K                     
                     MIRQFQACCLVPLFLVGFAQQTLKPQNKK                     
KN980906.1:subs69187 aacctcgttcgcctcggtgccacaccaaaGTGAGCA  Intron 1    
                     ttgatacggttcttttgtcaactacaaaa<0-----[69274:73411] 
                     gcggcgccttcggcgtcttggcagtatgg                     


SPP00000038_2.0   30    VDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGL 
                        VDC KG TGTIYEYGALTLNGE   QFKQFAGKHVLFVNVA Y GL 
                        VDC-KG!TGTIYEYGALTLNGE!--QFKQFAGKHVLFVNVATYXGL 
KN980906.1:subs73409 CAGggt ag2agaatgtggcacagg1  ctactggacgctgaggattgt 
                     -0>tag ag cgctaaagctctaga   ataatcgaattttatccaggt 
                        gtc gg accctgtaccctcca   gcggtacgccgtctacctacg 


SPP00000038_2.0   76 AAQYP                          LNALQEELKNFGVIVLAF 
                     AAQYP                          L ALQEELKNFGV+VLAF 
                     AAQYP          E:E[gaa]        LKALQEELKNFGVVVLAF 
KN980906.1:subs73538 ggctcGGTAAGAA  Intron 2   CAGAAcagccggcaatggggtgt 
                     ccaac <1-----[73554:78105]-1>  tactaaataatgttttct 
                     atgtt                          ggaggggggttcctggct 


SPP00000038_2.0  100 PCNQFGKQEPGTNSEILLGL                          YVC 
                     PCNQFGKQEPGTNSEILLGL                          YV  
                     PCNQFGKQEPGTNSEILLGL           K:K[aag]       YVR 
KN980906.1:subs78162 ctactgacgcgaatgaccgcAAGTGAGTG  Intron 3   CAGGtgc 
                     cgaatgaaacgcacatttgt  <2-----[78224:78718]-2> atg 
                     tccgtaaaaaaacaaattcc                          tgt 


SPP00000038_2.0  124 PGSGFVPSFQLFEKGDVNGEKEQKVFTFLK                    
                     PGSGFVP+FQLFEKGDVNGE EQKVFTFLK                    
                     PGSGFVPNFQLFEKGDVNGENEQKVFTFLK                    
KN980906.1:subs78729 cgagtgcatcctgagggaggagcagtatca                    
                     cgggttcatattaagatagaaaaattctta                    
                     atcctcttcgctgagtgtaataggcttcgg                    


SPP00000038_2.0  154                        NSCPPTSDLLGSSSQLFWEPMKVHDI 
                                            NSCPPTSDLLG SSQLFWEPMKVHDI 
                                            NSCPPTSDLLGLSSQLFWEPMKVHDI 
KN980906.1:subs78819 GTGAGTA  Intron 4   CAGattccatgctgttaccttgcaagcga 
                     <0-----[78819:80023]-0>acgccccattgtcgattgactataat 
                                            ccctactttgcaacaccggcggctcc 


SPP00000038_2.0  180 RWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQFNTH        
                     RWNFEKFLVGPDGVPVM WFH+APVSTVKSDILEYLKQF+ H        
                     RWNFEKFLVGPDGVPVMRWFHRAPVSTVKSDILEYLKQFSAH        
KN980906.1:subs80102 ctatgatcggcgggcgacttccgcgaagatgacgtcactagc        
                     ggataatttgcagtcttggtagcctgctacattaataatgca        
                     cgctgatgggttactcgcgccgtaccacgaccggcaggctcc        


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>KN980906.1:subseq(1511814,130227).pep
MIRQFQACCLVPLFLVGFAQQTLKPQNKKVDCKGXTGTIYEYGALTLNGEXQFKQFAGKH
VLFVNVATYXGLAAQYPELKALQEELKNFGVVVLAFPCNQFGKQEPGTNSEILLGLKYVR
PGSGFVPNFQLFEKGDVNGENEQKVFTFLKNSCPPTSDLLGLSSQLFWEPMKVHDIRWNF
EKFLVGPDGVPVMRWFHRAPVSTVKSDILEYLKQFSAH
//
>KN980906.1:subseq(1511814,130227).[69187:73426].sp
ATGATCCGGCAGTTCCAGGCCTGCTGTCTTGTCCCGCTGTTCCTGGTTGGCTTTGCTCAG
CAGACCCTAAAGCCTCAAAATAAGAAGGTGGATTGCAAGGGG
>KN980906.1:subseq(1511814,130227).[73429:73473].sp
ACAGGCACCATCTATGAGTATGGAGCCCTCACCCTTAACGGCGAA
>KN980906.1:subseq(1511814,130227).[73475:80227].sp
CAGTTCAAGCAGTTTGCAGGCAAGCACGTCCTGTTTGTCAATGTAGCCACCTATTGAGGC
TTGGCAGCTCAGTATCCTGAACTGAAGGCACTGCAGGAGGAGCTGAAGAATTTTGGCGTC
GTTGTGTTGGCCTTTCCTTGCAACCAGTTTGGAAAACAAGAACCAGGAACAAACTCAGAA
ATACTTCTTGGCCTCAAGTATGTGCGTCCAGGTAGCGGCTTTGTCCCTAATTTCCAGCTC
TTTGAGAAAGGGGATGTGAATGGAGAAAATGAACAGAAGGTCTTTACTTTCCTGAAGAAC
TCCTGCCCTCCAACCTCTGATCTTTTGGGCTTATCAAGCCAACTCTTCTGGGAGCCCATG
AAGGTCCATGACATCCGCTGGAACTTTGAGAAATTTCTGGTGGGGCCTGATGGAGTCCCT
GTCATGCGCTGGTTCCACCGGGCTCCAGTCAGCACAGTCAAGTCAGACATCCTGGAGTAC
CTAAAGCAGTTCAGTGCCCAC
//
KN980906.1:subseq(1511814,130227)	GeneWise	match	69187	73426	31.74	+	.	KN980906.1:subseq(1511814,130227)-genewise-prediction-1
KN980906.1:subseq(1511814,130227)	GeneWise	cds	69187	69273	0.00	+	0	KN980906.1:subseq(1511814,130227)-genewise-prediction-1
KN980906.1:subseq(1511814,130227)	GeneWise	intron	69274	73411	0.00	+	.	KN980906.1:subseq(1511814,130227)-genewise-prediction-1
KN980906.1:subseq(1511814,130227)	GeneWise	cds	73412	73426	0.00	+	0	KN980906.1:subseq(1511814,130227)-genewise-prediction-1
KN980906.1:subseq(1511814,130227)	GeneWise	match	73429	73473	20.34	+	.	KN980906.1:subseq(1511814,130227)-genewise-prediction-2
KN980906.1:subseq(1511814,130227)	GeneWise	cds	73429	73473	0.00	+	0	KN980906.1:subseq(1511814,130227)-genewise-prediction-2
KN980906.1:subseq(1511814,130227)	GeneWise	match	73475	80227	332.23	+	.	KN980906.1:subseq(1511814,130227)-genewise-prediction-3
KN980906.1:subseq(1511814,130227)	GeneWise	cds	73475	73553	0.00	+	0	KN980906.1:subseq(1511814,130227)-genewise-prediction-3
KN980906.1:subseq(1511814,130227)	GeneWise	intron	73554	78105	0.00	+	.	KN980906.1:subseq(1511814,130227)-genewise-prediction-3
KN980906.1:subseq(1511814,130227)	GeneWise	cds	78106	78223	0.00	+	2	KN980906.1:subseq(1511814,130227)-genewise-prediction-3
KN980906.1:subseq(1511814,130227)	GeneWise	intron	78224	78718	0.00	+	.	KN980906.1:subseq(1511814,130227)-genewise-prediction-3
KN980906.1:subseq(1511814,130227)	GeneWise	cds	78719	78818	0.00	+	1	KN980906.1:subseq(1511814,130227)-genewise-prediction-3
KN980906.1:subseq(1511814,130227)	GeneWise	intron	78819	80023	0.00	+	.	KN980906.1:subseq(1511814,130227)-genewise-prediction-3
KN980906.1:subseq(1511814,130227)	GeneWise	cds	80024	80227	0.00	+	0	KN980906.1:subseq(1511814,130227)-genewise-prediction-3
//