------- SECIS element -- id:1 -- grade:A ---- Chromosome = your_sequence Strand = + Positions = 6290 - 6362 Found by: Infernal (score=15.58) Covels (score=20.59) Stem2 length = 10 Apical loop length = 18 Insertion in stem2 = 0, 0 Free Energy = -9.07 ..(((((((.......(((((((((((((((................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..({({{((.--....([[{((((((((((..................))))))))))}]])----....))}})}).. target UAGCUGAUGA--AGUAUGAUGGCUCAGAUGACCAGUCACAUAAUGACCUGUCUGGGUCUGAA----ACACCAAGAACAC **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = your_sequence Strand = - Positions = 9889 - 9840 Found by: Infernal (score=11.32) Stem2 length = 12 Apical loop length = 18 Insertion in stem2 = 0, 0 Free Energy = -15.87 ..(((((((.......((((((((((.(((((..................))))).))))))))))........))))))).. model uccgggcaugcgUuaAUGAcGgccug-gcccuAAAcC---cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugcccggc ----------------{[[(((((((((((((..................)))))))))))))]]}----------------- target ----------------UGAUGUCAUCAGUUCAAAAGUGAGUGCAGACCACUGGACUGGUGACAGAU----------------- **** ^^^ ****