_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 9e-21
 Query name: gi|285026514|ref|NP_001038336.2| selenoprotein O [Danio rerio] >gi|172046215|sp|Q1LVN8.2|SELO_DANRE RecName: Full=Selenoprotein O; Short=SelO [Danio rerio]
 Query range: 506-692  (total 692)

 Target: /data/www-rg/seblastian_results/197782492/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  2045         2229
 -Exon 2  1650         1806
 -Exon 3  1155         1367

 Redox box: YES

Query   ELAMLVSMAQSNPALFQMISDRGTVSRQLERLSRLKELMDTTEEQLRVKHTEHWSDWIQKYR <---Intron---> QRLARECESGVDVKDVQTERVR
        |||||/|||||||||||||||| |//|||/|||/||/||| /||/|/ || / |/ || /|| <   238bp    > /||||| |   ||/ || ||||
Target  ELAMLLSMAQSNPALFQMISDRMTIARQLDRLSKLKDLMDISEEELKTKHADEWTHWITRYR                KRLARELEGQSDVQAVQEERVR
        gcgacctagcaacgctcaatgaaaagaccgacaacagcagaagggcaaacgggtactaacta                accgcgcggcaggcggcggcga
        atctttctcagaccttattcagtctcgatagtgataattatgaaatacaacaagcagtcgag                agtcgatagagatactaaagtg
        gggggctgtgccaggcggcacggaaggaacgccagacggcccgggcacatttggccgcact                ggtgtagggcattggcggggagg
                                                                                                            

Query   VMNNNNPHVVLRNYIAQNAIAAAENGDFSE <---Intron---> VQRVLKVLEKPFSVQEGLEQPGWMGRGGAAIPGERDETEEEGSNSSGAGARGLV
        ||// || |||||||||||| |||/||||| <   282bp    > ||/|||||||||| |  || | |/|||||   ||||| /|  / /| / ||  |
Target  VMDSTNPRVVLRNYIAQNAIEAAESGDFSE                VQQVLKVLEKPFSSQPDLELPAWVGRGGATEQGERDEGQE--AEASTSTARNPV
        gagaaaccggcaatagcagaggggaggttg                gccgcagcgactttccgcgccgtggcgggagcggagggcg--gggtatagaacg
        ttagcacgtttgaatcaactaccaggatca                taattattaactccacatatccgtggggccaagagaagaa--caccccccgact
        ggccccatgacgcctcgtatgttgtacctg                cggccgtgggcctcgatgattgggcatgccagaggcaagg--gaaaactcactg
                                                                                                            

Query   PYDSKPPVWANEICVTUSS
        ||||||| ||//|||||||
Target  PYDSKPPAWAHKICVTUSS
        ctgaaccgtgcaatgattt
        caagacccgcaatgtcgcc
        ctccgtatgttactcaatg
                        *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 551 ; UGA-SECIS: 557

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 603 - 527
 Found by:  Infernal (score=20.37) Covels (score=19.83)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -6.19

         ..(((((((.......(((((((((((((((................)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ....(({((.--....{[[{(({(((((((..................)))))))}))}]]}......-.-.))}))....
 target  UAACUAGCUG--GUAAUGACGACUCAGGCAACAAGUCCUACAGUGACCUGUCUGACUCUGACAAACUG-U-GGGGUAUCAC
                         ****            ^^                        ****