------- SECIS element -- id:1 -- grade:A ---- Chromosome = your_sequence Strand = + Positions = 336 - 411 Found by: Infernal (score=27.25) Covels (score=29.33) Stem2 length = 10 Apical loop length = 19 Insertion in stem2 = 0, 0 Free Energy = -16.11 ..(((((((.......(((((((((((((((.................))))))))))))))).........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc ..(({((((---....{[[{((((((((((...................))))))))))}]]}.....-.-.))))})).. target ACUUACACG---UUAAUGACGUCACGUCUCACACUCAUGACGUCAUGAAGAGGCGUGACCGAUGCUAA-A-CUGUGCGGAA **** **** ------- SECIS element -- id:2 -- grade:C ---- Chromosome = your_sequence Strand = - Positions = 6138 - 6070 Found by: Infernal (score=10.38) Stem2 length = 7 Apical loop length = 10 Insertion in stem2 = 0, 0 Free Energy = -7.36 ..(((((((.......(((((((((((((((...............)))))))))))))))...........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc ..(((({((.--....{[[{(((((({{(........---------..)}}))))))}]]}.......-...))})))).. target GGCUGAAGGC--CUCAUGAUUGUUUUUUCUCACCGUG---------AUGUUGGAACAUGAUUAUCUAA-CCACCAUCAGAU **** ^^ ****