_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-07
 Query name: gi|144925920|ref|NP_001004832.2| ethanolaminephosphotransferase 1 [Xenopus (Silurana) tropicalis]
 Query range: 365-399  (total 400)

 Target: /data/www-rg/seblastian_results/814542051/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  6782         6886

 Redox box: no

Query   VNQLSKHFNILPFSLRKPSTDULEEEKIGLQSAQV
        | ||| ||||  |||/||//|| |||/|||/ |/|
Target  VQQLSNHFNIFAFSLKKPNSDUQEEERIGLKGAEV
        gcccaactaatgttcaacaagtcgggcagtagggg
        taatgaatattctctaacagagaaaagtgtagcat
        aagcccccccccccgggcctcagggaaccgaaggt
                             *             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 1098 ; UGA-SECIS: 1137

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 5683 - 5603
 Found by:  Infernal (score=23.69) Covels (score=21.32)
 Stem2 length = 8   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -15.9

         ..(((((((........(((((((((((((((................)))))))))))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(((({[(........([[(((((({{(((..................)))}}))))))]])......-...)]}))))..
 target  GUUGCGCAGCGCUUGAAUGAAGAGUGCAUCCAAAAGCCGUACACGGAGCGGACUCACUCUGAGGGAACA-AGCCGUCGCACA
                          ****          ^^^                         ****