_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-39
 Query name: gi|361050318|dbj|BAL41420.1| glutathione peroxidase GPx1b [Thunnus orientalis]
 Query range: 1-188  (total 188)

 Target: /data/www-rg/seblastian_results/368868264/tempfiles/temptarget.fasta
 Chromosome: BADN01015002.1 Strand: -
 Positions:
 -Exon 1  19029        19244
 -Exon 2  17472        17819

 Redox box: no

Query   MAKKIYDFEAKLLTGETFDFSTLQGKVVLIVNVASLUGTTTRDYTQMNELHERYAGKGLVILGVPCNQFGHQ <---Intron---> ENCKNEEILLSL
        ||||||||||||||||||/||||||||||||||||||||||||||||||||||||||||||||||||||||| <   1209bp   > ||||||||||||
Target  MAKKIYDFEAKLLTGETFNFSTLQGKVVLIVNVASLUGTTTRDYTQMNELHERYAGKGLVILGVPCNQFGHQ                ENCKNEEILLSL
        agaaatgtggactaggatattaccgaggcagaggtctgaaaagtacaagccgctggagcgacggctactgcc                gataaggacttc
        tcaataatacattcgactatcctagatttttatcctggcccgaacataataagacgagttttgtcgaatgaa                aagaaaatttct
        gtaatcccgcacagaagttccaggcatcctgtggtcatgccgtccggcgccggcccggcgtgagcctgcctg                gccgcaaccgtg
                                            *                                                               

Query   KYVRPGNGFEPKFQLLEKVDVNGKNTHPLFTFLKESLPSPSDEQHTFLNDPKLIIWSPVCRNDVAWNFEKFLIGSDGVPFKRYSRRFLTSDIDGDIQKLL
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  KYVRPGNGFEPKFQLLEKVDVNGKNTHPLFTFLKESLPSPSDEQHTFLNDPKLIIWSPVCRNDVAWNFEKFLIGSDGVPFKRYSRRFLTSDIDGDIQKLL
        atgccgagtgcatcccgagggagaaaccctatcagacctcaggccattagcataatacgtaagggtatgatcagtgggctactaaatcaagagggacacc
        aatgcgagtacatattaatatagaacacttcttaagtcccgaaaacttaacatttggctggaatcgataatttgcagtctagagggttcgatagataatt
        gtcttacctgagtgcggagtgcggtctcgcgcggatcaccttgacttgccaggccgcgccgccgcgctggctcgacaggcgtccggccctcccaccggcc
                                                                                                            

Query   NQAN
        ||||
Target  NQAN
        acga
        aaca
        cgac
            
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 150 ; UGA-SECIS: 603

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = BADN01015002.1 Strand = - Positions = 17321 - 17248
 Found by:  Infernal (score=37.92) Covels (score=27.44)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -17.11

         ..(((((((.......(((((((((((((((.................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((((((((---....{[[((({(((((((...................)))))))})))]]}..--..-.)))))))).
 target  UUCUUUUAC---UAAAUGAAGGCAUCCUCUGAAACCAAGCUAGUUGUGAGGGGGGUAUCUGAUGA--AA-UGUAAAAGGC
                         ****           ^^^                         ****