_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-28
 Query name: gi|253314498|ref|NP_001156614.1| glutathione peroxidase 6 precursor [Bos taurus] >gi|296491174|tpg|DAA33247.1| TPA: glutathione peroxidase 6 [Bos taurus]
 Query range: 32-217  (total 221)

 Target: /data/www-rg/seblastian_results/833335794/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  1761         1908
 -Exon 2  1993         2110
 -Exon 3  2627         2726
 -Exon 4  3315         3509

 Redox box: no

Query   CYKGVTGTIYEYGALTLNGEEYIQFKQYVGKHVLFVNVATYUGLTAQYPE <---Intron---> LNALQEELKPFGVVVLGFPCNQFGKQEPAKNSEI
        |   / |||//| | ||||   / |  |/|| ||||| ||||||| || | <    84bp    > |||| /|/||||/ |||||||||||||| /  ||
Target  CDASIDGTIHKYNAKTLNGSNTVNFSDYIGKSVLFVNTATYUGLTLQYVE                LNALHDEMKPFGLTVLGFPCNQFGKQEPGQRHEI
        tggtaggaacatagaacagaaagatagtagaagctgaagattgcacctgg                cagccggaactgcagcgtctactgacgcgcacga
        gacctagctaaaacactaggactatgaatgagttttacccaggtctaat                atactaaatactgtcttgtcgaatgaaacgagaat
        tctcatccacgttagcacgtctacctcccagtcccctgtacaaccagtg                agtaaccggaatattttctaccgtgagaaggatat
                                                 *                                                          

Query   LMGLK <---Intron---> YVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFLK <---Intron---> NACPPTSDLLGS-SSQLFWEPMKVHDIRWN
        | ||| <   516bp    > /|||| |/|||| |||||||||/ ||/|||||| <   588bp    >  /|||  |   / | /|||||/|//||/||
Target  LPGLK                HVRPGNGYVPNFLLFEKGDVNGKNEQEVFTFLK                KSCPPVGDSFNNPSDRLFWEPLKLNDIKWN
        ccgta                cgacgagtgcatcctgagggagaagcggtatca                attccgggataacagatttgccacagaata
        tcgta                atgcgagatcattttaagatagaaaaattctta                acgcctgagtaacgagttgactataataga
        gata                atcaactatcaccggtgattgtaatgggtctctg                acctgtaccctccctagcggttgccccggc
                                                                                                            

Query   FEKFLVGPDGVPVMRWYHRASVSTVKSDMLEYLKQ
        |||||||||| |/|||/   ||| |//|/ //| |
Target  FEKFLVGPDGKPLMRWHPSVSVSVVRADIRKHLLQ
        tgatcggcggactaatccagagtggcggacacccc
        taatttgcagacttggacgtgtcttgcatgaatta
        tagcgggtcggaggggcacctcaacatttcacgca
                                           
 Sequence until next stop: 
ATGTTCACACAGCAGGTTTTTAATTAG
 M  F  T  Q  Q  V  F  N  * 

 Distance CDS-SECIS: 114 ; UGA-SECIS: 549

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 3624 - 3695
 Found by:  Infernal (score=21.6) Covels (score=25.73)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -9.37

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .([({(({(---((..([[{(((((((({(..................)}))))))))}]])----..)))}))})]).
 target  AUGGCAUGU---UGAAUGAAGAGGAGGCUUGAAAACAGAAACUCUGUGGUGCCUCUUCAGAG----UCUGGGAUUCAGG
                         ****           ^^^                        ****