_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 8e-36
 Query name: gi|194272328|gb|ABO38818.2| phospholipid hydroperoxide glutathione peroxidase [Thunnus maccoyii]
 Query range: 1-186  (total 186)

 Target: /data/www-rg/seblastian_results/417933029/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  5668         5718
 -Exon 2  5183         5277
 -Exon 3  4934         5078
 -Exon 4  4471         4622
 -Exon 5  4254         4278
 -Exon 6  3934         3993
 -Exon 7  3524         3553

 Redox box: no

Query   MRLIGSAVLFSVLLQAM <---Intron---> SAPTEDWQTATSIYDFSATDIDGNLVSLEKYR <---Intron---> GNVVIITNVASKUGKTPVN
        ||||||||||||||||| <   390bp    > |||||||||||||||||||||||||||||||| <   104bp    > |||||||||||||||||||
Target  MRLIGSAVLFSVLLQAM                SAPTEDWQTATSIYDFSATDIDGNLVSLEKYR                GNVVIITNVASKUGKTPVN
        accagtggcttgcccga                tgcaggtcagatatgttgagaggacgtcgata                gaggaaaaggtatgaacga
        tgttgcctttctttact                ccccaagacccctaatcccatagattctaaag                gattttcatccaggaccta
        gcgagctctctcgggtg                tagagcgggcgtttccagatctccgtcaaac                ggttccccttctaacacaac
                                                                                                     *      

Query   YSQFTQMHAKYAERGLHILAFPSNQFGNQ <---Intron---> EPGNETQIKQFAQSYNAQFDMFSKIDVNGANAHPLWKWMKEQPNGKGFMGN <--
        ||||||||||||||||||||||||||||| <   311bp    > ||||||||||||||||||||||||||||||||||||||||||||||||||| <  
Target  YSQFTQMHAKYAERGLHILAFPSNQFGNQ                EPGNETQIKQFAQSYNAQFDMFSKIDVNGANAHPLWKWMKEQPNGKGFMGN    
        ttctacacgatggagtcacgtctactgac                gcgagacaactgcttagctgataaaggaggagccctataagccagagtaga    
        acatcatacaacaggtattctccaatgaa                acgaacataatcacaacatattgatatagcacactgagtaaacagagttga    
        ctgtcggccgctgatacctccttcgtgcg                gtctatgcggttgccctgccgctgctgcgcccctggggggggccgaccga     
                                                                                                            

Query   -Intron---> SIKWNFTK <---Intron---> FLINKEGQVVKRYGPLDDPS <---Intron---> VVEKDLPQYL
         192bp    > |||||||| <   260bp    > |||||||||||||||||||| <   380bp    > ||||||||||
Target              SIKWNFTK                FLINKEGQVVKRYGPLDDPS                VVEKDLPQYL
                    aaatataa                ttaaaggcggaatgctggca                gggagccctt
                    gtagatca                tttaaagattagagctaacg                ttaaatcaat
                   tccggcctg                tgccaggggggacacgttac                ggggttcgca
                                                                                          
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 109 ; UGA-SECIS: 481

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 3414 - 3325
 Found by:  Infernal (score=23.41) Covels (score=25.7)
 Stem2 length = 8   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -4.9

         ..(((((((...............(((((((((((((((................)))))))))))))))............)))))))..
 model   uucggucaugcg--------UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         ...(((({((..............{[[{(((({((((....................))))}))))}]]}........-..))}))))...
 target  UUUUUUGGGUCCACCCCAGACCAGUGACGGUCAGCUCAUAAACCCGCAUGGCGGACAGGGCAGACCUGAUGAAAAAUG-GCGUGCAAACCU
                                 ****           ^^^                        ****