------- SECIS element -- id:1 -- grade:A ---- Chromosome = your_sequence Strand = + Positions = 6238 - 6312 Found by: Infernal (score=33.55) Covels (score=28.36) Stem2 length = 9 Apical loop length = 14 Insertion in stem2 = 0, 0 Free Energy = -13.57 ..(((((((.......(((((((((((((((...............))))))))))))))).............))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu----u-uuucaugaccggc .((((((((.--....{[[{(((((((((..........-----....)))))))))}]]}.........-...)))))))). target GCUGCUUUUU--UACAUGACGAUUACAGUGCAAACCUCU-----GGUAACUGUAAUUUGAUGACAUUAAA-CUUAAAAGUAGA **** ^^^ **** ------- SECIS element -- id:2 -- grade:A ---- Chromosome = your_sequence Strand = + Positions = 5966 - 6032 Found by: Infernal (score=28.25) Covels (score=15.92) Stem2 length = 10 Apical loop length = 10 Insertion in stem2 = 0, 0 Free Energy = -18.2 ..(((((((.......(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..(([((((---....{[[{((((((((({(........-----..)})))))))))}]]}..--..-.))))])).. target CAGUGUUUC---UUAGUGACGGCUGCAGAUUAAACCGUU-----GGACUCUGUAGCCAGAUAA--AG-UGAAAAACAG **** ^^^ ****