Protein prediction
Predicted by: exonerate Blastx evalue: 5e-16
Query protein: gi|270288784|ref|NP_001161874.1| selenoprotein M precursor [Equus caballus]
Positions on query: 1-141 Query length: 142

Target name: KE819481.1:subseq_32943,30059_
Positions on target: 15000-15119,13727-13762,13487-13521,13059-13137,12827-12979 Strand: -
Has a Redox Box!


  Query   MHLPLPPPPLLLLVAAVAAAATTFRPDWNRLHRLARARVE <---Intron---> TCGGUQLNRLKE <
          | | ||||||||| ||/||| ||||||||||||||| ||| <   1237bp   > |||||||||||| <
  Target  MRLSLPPPPLLLLFAALAAATTTFRPDWNRLHRLARGRVE                TCGGUQLNRLKE  
          acctccccccccctggcgggaaatccgtacccccgcgcgg                atggtccaccag  
          tgtctcccctttttcctcccccctgcagagtagtcgggta                cggggatagtaa  
          gccggtaacgggtcgacactccccgccgctgccgcacgag                ctgaaggccgag  
                                                                      *         
  
  Query   ---Intron---> VKAFVTEDIPFY <---Intron---> HNLVMKHLPGADPELVLLGHRYEELE <
             205bp    > ||||||/||| | <   349bp    > |||||||||||||||||||||||||| <
  Target                VKAFVTQDIPLY                HNLVMKHLPGADPELVLLGHRYEELE  
                        gagtgacgactt                cacgaacccgggcgcgccgcctggtg  
                        tacttcaatcta                aatttaatcgcacattttgagaaata  
                        ggctccgccag                cctgagatcgcccagcgggccccagag  
                                                                                
  
  Query   ---Intron---> RIPLSEMTREEINALVQELGFYRKAAPDDPVPPEFLRAPARPAKGSPARAD
              79bp    > |||||||||/|||||||||||||||||||||||//||||||||/ /    |
  Target                RIPLSEMTRKEINALVQELGFYRKAAPDDPVPPKYLRAPARPARPAEGAPD
                        caccagaacagaagcgcgcgttcaggcggcgccatccgcgacgacggggcg
                        gtctgatcgaatacttaatgtagacccaactccaatgcccgccgccagcca
                        acaccagccggccaggggtccccgggccttgccacgggctgatgtcgctgc