Selenoprotein id: 1         Category: known selenoprotein
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Protein prediction
Predicted by: exonerate Blastx evalue: e-157
Query protein: gi|379317163|ref|NP_001116121.2| type III iodothyronine deiodinase [Macaca mulatta]
Positions on query: 1-304 Query length: 304

Target name: AWHC01168030.1
Positions on target: 114-320,338-1042 Strand: +


  Query   MPSQAASRLVVGEGEGSQGASGPAATMLRSLLLHSLRLCAQTASCLVLFPRFLGTAFMLWLLDFLCIRK 
          || |||  || ||| | ||| | ||||||||||||||||||||||||| |||| || /| ||||||||| 
  Target  MPGQAALPLVGGEGGGGQGALGAAATMLRSLLLHSLRLCAQTASCLVLCPRFLRTALVLCLLDFLCIRK 
          acgcggcctggggggggcggcggggaacctcccctcactgcagttcgctcctccagcgctccgtctaca 
          tcgacctcttggaggggagctgccccttgctttactgtgcacccgtttgcgttgcctttgttattgtga 
          gtcgccggggtaatcgcggtggtaccgcccggccgggcccggcgccgccgccccgccgccgcccgcccg 
                                                                                
  
  Query   <---Intron---> HFLGRRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLKAVWHGQKLD
          <    17bp    >  ||||||||||||||| ||/|||/||||||| |||||||||||||||||||||||
  Target                 LFLGRRRRGQPEPEVEFNSDGEELPPDDPPIFVSDDNRLCTLASLKAVWHGQKLD
                         ctcgccccgccgcgggtaaggggcccggccatgtggacctacgtcaggtcgcatg
                         tttggggggacacatatagagaatccaacctttcaaagtgctcctactgagaata
                         tcgccccgtgtacaggccctcgggccccgcccggccccgcgggggagggccgggt
                                                                                
  
  Query   FFKQAHEGGPAPNSEVVLPDGFQSQRILDYAQGNRPLVLNFGSCTUPPFMARMSAFQRLVTKYQRDVDFL
          |||||||||||||||||||||||/|||||||/||||||||||||||||||||||||||||||||||||||
  Target  FFKQAHEGGPAPNSEVVLPDGFQNQRILDYARGNRPLVLNFGSCTUPPFMARMSAFQRLVTKYQRDVDFL
          ttacgcgggcgcatgggccggtcaccacgtgcgacccgcatgatatcctagcaagtcccgaatccgggtc
          ttaacaaggcccacatttcagtaaagttaacggagctttatgggcgccttcgtgctagttcaaagatatt
          ccgggcgcagtcccggcgccctgcgccctcgaaccgggtccccccaaacggcgcccgcgccgcgccgccc
                                                       *                        
  
  Query   IIYIEEAHPSDGWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVI
          |||||||||||||||||||| ||/|/||||||||||||||||| | ||||||||||||||||||||||||
  Target  IIYIEEAHPSDGWVTTDSPYSIPKHQSLEDRVSAARVLQQGAPSCDLVLDTMANSSSSAYGAYFERLYVI
          aatagggcctggtgaagtctaacaccatggcgaggcgcccggcatgcgcgaagataatgtggttgcctga
          ttataacaccaggtccaccagtcaaagtaagtgccgttaagccggatttactcacggccagcatagtatt
          ccccaggctcccgccaccccccggcacggcgctcgtgggatgccctccaccgcccccgctccccgccccc
                                                                                
  
  Query   QSGTIMYQGGRGPDGYQVSELRTWLERYDEQLHGARPRRV
          ||| |||||||||||||||||||||| |||||   /|| |
  Target  QSGIIMYQGGRGPDGYQVSELRTWLEHYDEQLRSGQPRPV
          cagaaatcggcgcggtcgtgccatcgctggcccagccccg
          aggtttaaggggcagaatcatgcgtaaaaaatgggacgct
          gtcctgcgtctcacccgcaggccgggcttgggcccgttag