Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q proteina.fa -t SelR3.2.subseq.fa]
Hostname: [ws101071]

C4 Alignment:
------------
         Query: SelR3
        Target: KI537679.1:subseq(17625386,200164) Balaenoptera acutorostrata scammoni unplaced genomic scaffold scaffold23, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 534
   Query range: 10 -> 195
  Target range: 4461 -> 100164

     11 : LeuSerLeuCysValCysLeuAsnProLeuSerGlyCysGly{Se}  >>>> Targe :     25
          |||...||||||   |||   ...   ...|||...||||||{!.}           1
          LeuGlyLeuCysPheCysAlaArgAlaPheSerSerCysGly{Ly}++          
   4462 : ttgggtctttgtttctgtgcgagggctttctctagttgtggc{aa}gt.......... :   4508

     26 : t Intron 1 >>>>  {r}ArgProGlyLysProLeuSerArgGlySer{C}  >>> :     36
          9581 bp          {!}|||||||||         |||   ...|||{ }     
                         ++{s}ArgProGlyAlaValCysSerTrpSerSer{S}++   
   4509 : ...............ag{g}aggccggGGGCtgtgtgctcatggtcatca{a}gt... :  24121

     37 : > Target Intron 2 >>>>  {ys}ArgAspLysLys  >>>> Target Intr :     41
                 673 bp           {!!}! !..!   |||           1276 bp
                                ++{er}IleSerValLys++                
  24122 : ......................ag{GT}ATATCTGTCAAGgt................ :  24808

     42 : on 3 >>>>  SerCysLysValValPheSerGlnGlnGluLeuArgLys{A}  >>> :     54
                     !!!|||   ! !  !     !|||  !  !! !|||:::{|}     
                   ++ThrCysValGluTyrLysHisGlnAlaLeuCysArgArg{A}++   
  24809 : .........agACATGTGTTGAGTACAAGCACCAGGCACTGTGTAGGCGC{C}gt... :  26124

     55 : > Target Intron 4 >>>>  {rg}LeuThrProGlnGlnTyrHisValThr  > :     64
                1399 bp           {||}! !! !|||.!.  !  !!  |||  !   
                                ++{rg}GlnLysProAsnLeuThrLeuValGln++ 
  26125 : ......................ag{gT}CAGAAACCAAATTTGACTCTGGTTCAGgt. :  27552

     65 : >>> Target Intron 5 >>>>  GlnGluLysGlyThrGluSerAlaPheGluGl :     74
                  21688 bp          :!!|||   ..!! !:!!! !  !|||:!!||
                                  ++LysGluProAsnArgLysIleArgPheLysGl
  27553 : ........................agAAAGAACCTAATAGAAAAATTAGATTTAAAGG :  49268

     75 : yGluTyrThrHisHisLysAspProGly{Il}  >>>> Target Intron 6 >>> :     84
          |:!!!:!||| ! |||    ! |||  !{!!}           25296 bp       
          yGlnPheThrLysHisVal***ProIle{Me}++                        
  49269 : CCAGTTCACCAAACATGTTTAACCTATA{AT}gt........................ :  49302

     85 : >  {e}TyrLys  >>>> Target Intron 7 >>>>  CysValValCysGlyTh :     92
             {:}!:!!:!           11529 bp                :::   ...  
           ++{t}PheArg++                         +-IleTyrIleTyrAlaMe
  49303 : .ag{g}TTTAGGgt.........................atatatatatatatgcgat :  86147

     93 : rProLeuPheAsnLeuArgAlaLysAsnThrLysLeuLeuSerLysSer{G}  >>>> :    109
          ! !!  !  !||||||||||||!:!||||||||||||||||||||||||{|}      
          tThrAsnProAsnLeuArgAlaArgAsnThrLysLeuLeuSerLysSer{G}++    
  86148 : GACTAATCCCAACCTAAGAGCTAGAAATACAAAACTCTTGTCAAAATCA{G}gt.... :  86201

    110 :  Target Intron 8 >>>>  {ly}TrpProSerPheHisAspValIleSerSerA :    120
               4408 bp           {||}|||||||||||||||||||||||||||||||
                               ++{ly}TrpProSerPheHisAspValIleSerSerA
  86202 : .....................ag{GT}TGGCCTTCATTCCACGATGTGATCAGTTCTG :  90639

    121 : spAlaValThrPheThrAspAspPheSerTyrGlyMetHisArgValGluThrSerCy :    139
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          spAlaValThrPheThrAspAspPheSerTyrGlyMetHisArgValGluThrSerCy
  90640 : ATGCAGTCACATTCACAGATGACTTTTCCTATGGGATGCACAGGGTGGAAACCAGCTG :  90696

    140 : sSerGln  >>>> Target Intron 9 >>>>  CysGlyAlaHisLeuGlyHisI :    149
          |||||||           9298 bp           ||||||||||||||||||||||
          sSerGln++                         ++CysGlyAlaHisLeuGlyHisI
  90697 : CTCTCAGgt.........................agTGCGGTGCTCACCTCGGGCACA : 100024

    150 : lePheAspAspGlyProArgProThrGlyLysArgTyrCysIleAsnSerAlaSerLe :    168
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          lePheAspAspGlyProArgProThrGlyLysArgTyrCysIleAsnSerAlaSerLe
 100025 : TTTTTGACGACGGACCTCGTCCAACTGGCAAAAGATACTGCATAAACTCTGCGTCCTT : 100081

    169 : uSerPheThrProAlaGluIleSerAspAlaSerGlyAspSerAlaGlyGlySerPro :    187
          |||||||||||||||||||||||||..!||||||||||||||||||||||||||||||
          uSerPheThrProAlaGluIleSerSerAlaSerGlyAspSerAlaGlyGlySerPro
 100082 : GTCTTTCACACCTGCAGAGATCAGCAGCGCCAGTGGGGACAGCGCAGGGGGCAGCCCG : 100138

    188 : AlaGlnGlyAspLysThrGluLeu :    195
          ||||||||||||||||||||||||
          AlaGlnGlyAspLysThrGluLeu
 100139 : GCCCAGGGCGACAAGACGGAGCTG : 100164

vulgar: SelR3 10 195 . KI537679.1:subseq(17625386,200164) 4461 100164 + 534 M 14 42 S 0 2 5 0 2 I 0 19577 3 0 2 S 1 1 M 10 30 S 0 1 5 0 2 I 0 669 3 0 2 S 1 2 M 4 12 5 0 2 I 0 1272 3 0 2 M 13 39 S 0 1 5 0 2 I 0 1395 3 0 2 S 1 2 M 9 27 5 0 2 I 0 21684 3 0 2 M 20 60 S 0 2 5 0 2 I 0 25292 3 0 2 S 1 1 M 2 6 5 0 2 I 0 11525 3 0 2 M 22 66 S 0 1 5 0 2 I 0 4404 3 0 2 S 1 2 M 32 96 5 0 2 I 0 9294 3 0 2 M 54 162
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	gene	4462	100164	534	+	.	gene_id 1 ; sequence SelR3 ; gene_orientation +
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	cds	4462	4505	.	+	.	
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	exon	4462	4505	.	+	.	insertions 0 ; deletions 0
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	splice5	4506	4507	.	+	.	intron_id 1 ; splice_site "gt"
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	intron	4506	24086	.	+	.	intron_id 1
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	splice3	24085	24086	.	+	.	intron_id 0 ; splice_site "ag"
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	cds	24087	24118	.	+	.	
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	exon	24087	24118	.	+	.	insertions 0 ; deletions 0
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	splice5	24119	24120	.	+	.	intron_id 2 ; splice_site "gt"
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	intron	24119	24791	.	+	.	intron_id 2
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	splice3	24790	24791	.	+	.	intron_id 1 ; splice_site "AG"
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	cds	24792	24805	.	+	.	
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	exon	24792	24805	.	+	.	insertions 0 ; deletions 0
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	splice5	24806	24807	.	+	.	intron_id 3 ; splice_site "GT"
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	intron	24806	26081	.	+	.	intron_id 3
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	splice3	26080	26081	.	+	.	intron_id 2 ; splice_site "AG"
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	cds	26082	26121	.	+	.	
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	exon	26082	26121	.	+	.	insertions 0 ; deletions 0
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	splice5	26122	26123	.	+	.	intron_id 4 ; splice_site "GT"
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	intron	26122	27520	.	+	.	intron_id 4
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	splice3	27519	27520	.	+	.	intron_id 3 ; splice_site "ag"
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	cds	27521	27549	.	+	.	
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	exon	27521	27549	.	+	.	insertions 0 ; deletions 0
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	splice5	27550	27551	.	+	.	intron_id 5 ; splice_site "GT"
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	intron	27550	49237	.	+	.	intron_id 5
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	splice3	49236	49237	.	+	.	intron_id 4 ; splice_site "AG"
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	cds	49238	49299	.	+	.	
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	exon	49238	49299	.	+	.	insertions 0 ; deletions 0
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	splice5	49300	49301	.	+	.	intron_id 6 ; splice_site "GT"
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	intron	49300	74595	.	+	.	intron_id 6
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	splice3	74594	74595	.	+	.	intron_id 5 ; splice_site "ag"
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	cds	74596	74602	.	+	.	
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	exon	74596	74602	.	+	.	insertions 0 ; deletions 0
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	splice5	74603	74604	.	+	.	intron_id 7 ; splice_site "GT"
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	intron	74603	86131	.	+	.	intron_id 7
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	splice3	86130	86131	.	+	.	intron_id 6 ; splice_site "at"
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	cds	86132	86198	.	+	.	
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	exon	86132	86198	.	+	.	insertions 0 ; deletions 0
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	splice5	86199	86200	.	+	.	intron_id 8 ; splice_site "GT"
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	intron	86199	90606	.	+	.	intron_id 8
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	splice3	90605	90606	.	+	.	intron_id 7 ; splice_site "AG"
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	cds	90607	90704	.	+	.	
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	exon	90607	90704	.	+	.	insertions 0 ; deletions 0
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	splice5	90705	90706	.	+	.	intron_id 9 ; splice_site "GT"
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	intron	90705	100002	.	+	.	intron_id 9
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	splice3	100001	100002	.	+	.	intron_id 8 ; splice_site "AG"
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	cds	100003	100164	.	+	.	
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	exon	100003	100164	.	+	.	insertions 0 ; deletions 0
KI537679.1:subseq(17625386,200164)	exonerate:protein2genome:local	similarity	4462	100164	534	+	.	alignment_id 1 ; Query SelR3 ; Align 4462 11 42 ; Align 24088 26 30 ; Align 24794 37 12 ; Align 26082 41 39 ; Align 27523 55 27 ; Align 49238 64 60 ; Align 74597 85 6 ; Align 86132 87 66 ; Align 90609 110 96 ; Align 100003 142 162
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
