C4 Alignment:
------------
         Query: SelN
        Target: KI537648.1:subseq(833055,200227) Balaenoptera acutorostrata scammoni unplaced genomic scaffold scaffold218, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 2510
   Query range: 0 -> 497
  Target range: 106209 -> 93046

      1 : GluGlnAspSerAlaLeuLysAlaLeuGlyThrGluGlyLeuPheLeuPheSerSerL :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluGlnAspSerAlaLeuLysAlaLeuGlyThrGluGlyLeuPheLeuPheSerSerL
 106209 : GAGCAGGACTCGGCGCTGAAAGCCCTGGGGACAGAAggcctcttcctcttttcctctc : 106152

     21 : euAspThrAspGlyAspMetTyrLeuSerProGluGluPheLysProIleAlaGluLy :     39
          |||||||||||||||||! !||||||||||||||||||||||||||||||||||||||
          euAspThrAspGlyAspThrTyrLeuSerProGluGluPheLysProIleAlaGluLy
 106151 : tggacACTGATGGGGACACGTACCTCAGCCCCGAGGAGTTCAAGCCCATTGCTGAGAA : 106095

     40 : sLeuThr{G}  >>>> Target Intron 1 >>>>  {ly}SerThrProSerAla :     47
          |||||||{|}           3157 bp           {||}|||||||||||||||
          sLeuThr{G}++                         ++{ly}SerThrProSerAla
 106094 : GCTGACA{G}gt.........................ag{GG}TCAACTCCTTCGGCC : 102914

     48 : SerTyrGluGluGluAspLeuProProAspProSerGluGluThrLeuThrIleGluA :     67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          SerTyrGluGluGluAspLeuProProAspProSerGluGluThrLeuThrIleGluA
 102913 : AGCTATGAGGAGGAGGATCTGCCCCCTGACCCCAGCGAGGAGACACTCACCATAGAAG : 102854

     68 : laArgPheGlnProLeuLeuProGluSerMetThrLysSerLysAspGlyPheLeuGl :     86
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          laArgPheGlnProLeuLeuProGluSerMetThrLysSerLysAspGlyPheLeuGl
 102853 : CCCGATTCCAGCCTCTGCTGCCAGAGTCCATGACCAAGAGCAAAGATGGGTTCCTAGG : 102797

     87 : y  >>>> Target Intron 2 >>>>  ValSerArgLeuAlaLeuSerGlyLeuA :     96
          |           2567 bp           ||||||||||||||||||||||||||||
          y++                         ++ValSerArgLeuAlaLeuSerGlyLeuA
 102796 : Ggt.........................agGTCTCCCGCCTGGCCCTGTCCGGCCTCC : 100200

     97 : rgAsnTrpThrThrAlaAlaSerProSerAlaValPheAlaAlaArgHisPheArgPr :    115
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rgAsnTrpThrThrAlaAlaSerProSerAlaValPheAlaAlaArgHisPheArgPr
 100199 : GCAACTGGACGACCGCAGCCTCGCCAAGCGCGGTGTTTGCCGCCCGCCACTTCCGGCC : 100143

    116 : oPheLeuProProArgGlyHisAlaGluLeuGlyGluProTrpTrpIleIleProSer :    134
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          oPheLeuProProArgGlyHisAlaGluLeuGlyGluProTrpTrpIleIleProSer
 100142 : CTTCCTTCCCCCTCGGGGCCACGCGGAGCTGGGCGAGCCCTGGTGGATCATCCCCAGT : 100086

    135 : GluLeuSerValPheThrGlyTyrLeuSerAsnAsnArgPheTyrProProProProL :    154
          ||||||!:!|||||||||||||||||||||||||||||||||||||||||||||||||
          GluLeuAsnValPheThrGlyTyrLeuSerAsnAsnArgPheTyrProProProProL
 100085 : GAGCTGAACGTCTTCACCGGCTATCTGTCCAACAACCGCTTCTACCCACCACCCCCCA : 100026

    155 : ysGlyLysGlu  >>>> Target Intron 3 >>>>  ValIleIleHisArgLeu :    163
          |||||||||||            216 bp           ||||||||||||||||||
          ysGlyLysGlu++                         ++ValIleIleHisArgLeu
 100025 : AGGGCAAGGAGgt.........................aggTCATCATCCACCGGCTC :  99783

    164 : LeuSerMetPheHisProArgProPheValLysThrArgPheAlaProGlnGlyAlaV :    183
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          LeuSerMetPheHisProArgProPheValLysThrArgPheAlaProGlnGlyAlaV
  99782 : CTGAGCATGTTCCACCCTCGGCCCTTCGTGAAGACCCGCTTTGCCCCTCAGGGGGCCG :  99723

    184 : alAlaCysLeuThrAlaThrSerAspPheTyrTyrThrValMetPhe{Ar}  >>>>  :    199
          |||||||||||||||||||||||||||||||||||||||||||||||{||}       
          alAlaCysLeuThrAlaThrSerAspPheTyrTyrThrValMetPhe{Ar}++     
  99722 : TCGCCTGCCTGACCGCCACCAGCGACTTCTACTACACCGTGATGTTC{CG}gt..... :  99671

    200 : Target Intron 4 >>>>  {g}IleHisAlaGluPheGlnLeuSerGluProPro :    210
               564 bp           {|}|||||||||||||||||||||||||||||||||
                              ++{g}IleHisAlaGluPheGlnLeuSerGluProPro
  99670 : ....................ag{C}ATCCACGCCGAGTTCCAGCTCAGCGAGCCGCCC :  99078

    211 : AspPheProPheTrpPheSerProGlyGlnPheThrGlyHisIleIleLeuSerLysA :    230
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AspPheProPheTrpPheSerProGlyGlnPheThrGlyHisIleIleLeuSerLysA
  99077 : GACTTCCCCTTCTGGTTCTCACCCGGCCAGTTCACGGGCCACATCATCCTCTCCAAAG :  99018

    231 : spAlaThrHisValArgAspPheArgLeuPheValProAsnHis{Ar}  >>>> Tar :    245
          ||||||||||||||||||||||||||||||||||||||||||||{||}          
          spAlaThrHisValArgAspPheArgLeuPheValProAsnHis{Ar}++        
  99017 : ACGCCACCCACGTCCGTGACTTCCGGCTCTTCGTGCCCAACCAC{AG}gt........ :  98969

    246 : get Intron 5 >>>>  {g}SerLeuAsnValAspMetGluTrpLeuTyrGlyAla :    257
           1709 bp           {|}||||||||||||||||||||||||||||||||||||
                           ++{g}SerLeuAsnValAspMetGluTrpLeuTyrGlyAla
  98968 : .................ag{G}TCTCTGAATGTGGACATGGAGTGGCTGTACGGGGCC :  97228

    258 : SerGluSerSerAsnMetGluValAspIleGlyTyrIleProGln  >>>> Target :    273
          |||||||||||||||||||||||||||||||||||||||||||||            4
          SerGluSerSerAsnMetGluValAspIleGlyTyrIleProGln++           
  97227 : AGCGAGAGCAGCAACATGGAGGTGGACATCGGCTACATACCCCAGgt........... :  97178

    274 :  Intron 6 >>>>  MetGluLeuGluAlaThrGlyProSerValProSerValIle :    286
          51 bp           ||||||||||||||||||||||||||||||||||||||||||
                        ++MetGluLeuGluAlaThrGlyProSerValProSerValIle
  97177 : ..............agATGGAGCTGGAGGCCACGGGCCCCTCAGTGCCCTCTGTGATC :  96690

    287 : LeuAspGluAspGlyAsnMetIleAspSerArgLeuProSerGlyGluProLeuGlnP :    306
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          LeuAspGluAspGlyAsnMetIleAspSerArgLeuProSerGlyGluProLeuGlnP
  96689 : CTGGACGAGGATGGCAACATGATCGACAGCCGCCTGCCCTCGGGGGAGCCCCTCCAGT :  96630

    307 : heValPheGluGluIleThrTrpGlnGlnGluLeuSerTrpGluGluAlaAlaArgAr :    325
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          heValPheGluGluIleThrTrpGlnGlnGluLeuSerTrpGluGluAlaAlaArgAr
  96629 : TTGTGTTTGAGGAGATCACGTGGCAGCAGGAGCTGAGCTGGGAGGAGGCCGCCCGGCG :  96573

    326 : gLeuGluValAlaMetTyrProPheLysLys  >>>> Target Intron 7 >>>> :    336
          |||||||||||||||||||||||||||||||            382 bp         
          gLeuGluValAlaMetTyrProPheLysLys++                         
  96572 : CCTGGAGGTGGCCATGTACCCCTTCAAGAAGgt......................... :  96538

    337 :   ValThrTyrLeuProPheThrLysAlaPheGluArgAlaLysAlaGluAsnLysLe :    354
            |||||||||||||||||||||:!!|||||||||!:!||||||||||||||||||||
          ++ValThrTyrLeuProPheThrGluAlaPheGluGlnAlaLysAlaGluAsnLysLe
  96537 : agGTCACCTACCTGCCGTTCACCGAGGCCTTTGAGCAAGCCAAGGCCGAGAACAAGCT :  96104

    355 : uValHisSerValLeuLeuTrpGlyAlaLeuAspAspGlnSerCysUnk{G}  >>>> :    371
          ||||||||||||||||||||||||||||||||||||||||||||||   {|}      
          uValHisSerValLeuLeuTrpGlyAlaLeuAspAspGlnSerCys***{G}++    
  96103 : GGTGCACTCAGTCCTGCTGTGGGGGGCCCTGGACGACCAGTCCTGCTGA{G}gt.... :  96050

    372 :  Target Intron 8 >>>>  {ly}SerGlyArgThrLeuArgGluThrValLeuG :    382
               1084 bp           {||}|||||||||||||||||||||||||||||||
                               ++{ly}SerGlyArgThrLeuArgGluThrValLeuG
  96049 : .....................ag{GT}TCAGGGCGGACTCTCCGGGAAACTGTCCTGG :  94936

    383 : luSerSerProIleLeuThrLeuLeuAsnGluSerPheIleSerThrTrpSerLeuVa :    401
          |||||||||||||||||.!!||||||||||||||||||||||||||||||||||||||
          luSerSerProIleLeuAlaLeuLeuAsnGluSerPheIleSerThrTrpSerLeuVa
  94935 : AAAGTTCGCCCATCCTCGCCCTCCTCAACGAGAGCTTCATCAGCACCTGGTCCCTAGT :  94879

    402 : lLysGluLeuGluAspLeuGln  >>>> Target Intron 9 >>>>  AsnAsnG :    411
          ||||||||||||||||||||||            93 bp            |||||||
          lLysGluLeuGluAspLeuGln++                         ++AsnAsnG
  94878 : GAAGGAGCTGGAGGACCTGCAGgt.........................agAACAACC :  94756

    412 : lnGluAsnProSerHisGlnLysLeuAlaSerLeuHisLeuGluLysTyrSerPhePr :    430
          |||||||||||||||||:!!||||||||||||||||||||||||||||||||||||||
          lnGluAsnProSerHisLysLysLeuAlaSerLeuHisLeuGluLysTyrSerPhePr
  94755 : AGGAGAACCCATCCCACAAGAAGCTGGCCAGCCTGCACCTGGAGAAGTACAGCTTCCC :  94699

    431 : oValGluMetMetIleCysLeuProAsnGlyThrVal  >>>> Target Intron  :    443
          |||||||||||||||||||||||||||||||||||||            1449 bp  
          oValGluMetMetIleCysLeuProAsnGlyThrVal++                   
  94698 : CGTGGAGATGATGATCTGCCTGCCCAATGGCACCGTGgt................... :  94658

    444 : 10 >>>>  ValHisHisIleAsnAlaAsnTyrPheLeuAspIleThrSerValLysP :    459
                   |||||||||||||||||||||||||||||||||||||||||||||||||
                 ++ValHisHisIleAsnAlaAsnTyrPheLeuAspIleThrSerValLysP
  94657 : .......agGTCCACCACATCAACGCCAACTACTTCTTGGACATCACCTCTGTGAAGC :  93163

    460 : roGluAspIleGluAsnAsnValPheSerPheSerSerThrPheGluAspProSerTh :    478
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          roGluAspIleGluAsnAsnValPheSerPheSerSerThrPheGluAspProSerTh
  93162 : CTGAGGACATCGAGAACAATGTCTTCAGCTTCTCATCCACCTTTGAAGACCCGTCCAC :  93106

    479 : rAlaThrTyrMetGlnPheLeuLysGluGlyLeuArgArgGlyLeuProLeuLeuGln :    497
          ||||||||||:!!|||||||||||||||||||||!:! ! ||||||||||||||||||
          rAlaThrTyrLeuGlnPheLeuLysGluGlyLeuGlnCysGlyLeuProLeuLeuGln
  93105 : AGCCACCTACCTGCAGTTCCTGAAGGAGGGCCTCCAGTGcggcctgcccctcctccag :  93049

vulgar: SelN 0 497 . KI537648.1:subseq(833055,200227) 106209 93046 - 2510 M 41 123 S 0 1 5 0 2 I 0 3153 3 0 2 S 1 2 M 44 132 5 0 2 I 0 2563 3 0 2 M 71 213 5 0 2 I 0 212 3 0 2 M 41 123 S 0 2 5 0 2 I 0 560 3 0 2 S 1 1 M 45 135 S 0 2 5 0 2 I 0 1705 3 0 2 S 1 1 M 27 81 5 0 2 I 0 447 3 0 2 M 63 189 5 0 2 I 0 378 3 0 2 M 35 105 S 0 1 5 0 2 I 0 1080 3 0 2 S 1 2 M 37 111 5 0 2 I 0 89 3 0 2 M 34 102 5 0 2 I 0 1445 3 0 2 M 55 165
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	gene	93047	106209	2510	-	.	gene_id 1 ; sequence SelN ; gene_orientation +
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	cds	106086	106209	.	-	.	
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	exon	106086	106209	.	-	.	insertions 0 ; deletions 0
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice5	106084	106085	.	-	.	intron_id 1 ; splice_site "GT"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	intron	102929	106085	.	-	.	intron_id 1
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice3	102929	102930	.	-	.	intron_id 0 ; splice_site "AG"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	cds	102795	102928	.	-	.	
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	exon	102795	102928	.	-	.	insertions 0 ; deletions 0
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice5	102793	102794	.	-	.	intron_id 2 ; splice_site "GT"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	intron	100228	102794	.	-	.	intron_id 2
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice3	100228	100229	.	-	.	intron_id 1 ; splice_site "AG"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	cds	100015	100227	.	-	.	
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	exon	100015	100227	.	-	.	insertions 0 ; deletions 0
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice5	100013	100014	.	-	.	intron_id 3 ; splice_site "GT"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	intron	99799	100014	.	-	.	intron_id 3
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice3	99799	99800	.	-	.	intron_id 2 ; splice_site "ag"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	cds	99674	99798	.	-	.	
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	exon	99674	99798	.	-	.	insertions 0 ; deletions 0
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice5	99672	99673	.	-	.	intron_id 4 ; splice_site "GT"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	intron	99110	99673	.	-	.	intron_id 4
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice3	99110	99111	.	-	.	intron_id 3 ; splice_site "AG"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	cds	98972	99109	.	-	.	
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	exon	98972	99109	.	-	.	insertions 0 ; deletions 0
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice5	98970	98971	.	-	.	intron_id 5 ; splice_site "GT"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	intron	97263	98971	.	-	.	intron_id 5
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice3	97263	97264	.	-	.	intron_id 4 ; splice_site "AG"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	cds	97181	97262	.	-	.	
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	exon	97181	97262	.	-	.	insertions 0 ; deletions 0
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice5	97179	97180	.	-	.	intron_id 6 ; splice_site "GT"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	intron	96730	97180	.	-	.	intron_id 6
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice3	96730	96731	.	-	.	intron_id 5 ; splice_site "AG"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	cds	96541	96729	.	-	.	
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	exon	96541	96729	.	-	.	insertions 0 ; deletions 0
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice5	96539	96540	.	-	.	intron_id 7 ; splice_site "GT"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	intron	96159	96540	.	-	.	intron_id 7
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice3	96159	96160	.	-	.	intron_id 6 ; splice_site "AG"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	cds	96053	96158	.	-	.	
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	exon	96053	96158	.	-	.	insertions 0 ; deletions 0
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice5	96051	96052	.	-	.	intron_id 8 ; splice_site "GT"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	intron	94969	96052	.	-	.	intron_id 8
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice3	94969	94970	.	-	.	intron_id 7 ; splice_site "AG"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	cds	94856	94968	.	-	.	
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	exon	94856	94968	.	-	.	insertions 0 ; deletions 0
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice5	94854	94855	.	-	.	intron_id 9 ; splice_site "GT"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	intron	94763	94855	.	-	.	intron_id 9
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice3	94763	94764	.	-	.	intron_id 8 ; splice_site "AG"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	cds	94661	94762	.	-	.	
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	exon	94661	94762	.	-	.	insertions 0 ; deletions 0
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice5	94659	94660	.	-	.	intron_id 10 ; splice_site "GT"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	intron	93212	94660	.	-	.	intron_id 10
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	splice3	93212	93213	.	-	.	intron_id 9 ; splice_site "AG"
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	cds	93047	93211	.	-	.	
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	exon	93047	93211	.	-	.	insertions 0 ; deletions 0
KI537648.1:subseq(833055,200227)	exonerate:protein2genome:local	similarity	93047	106209	2510	-	.	alignment_id 1 ; Query SelN ; Align 106210 1 123 ; Align 102927 43 132 ; Align 100228 87 213 ; Align 99799 158 123 ; Align 99109 200 135 ; Align 97262 246 81 ; Align 96730 273 189 ; Align 96159 336 105 ; Align 94967 372 111 ; Align 94763 409 102 ; Align 93212 443 165
# --- END OF GFF DUMP ---
#

