Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q proteina.fa -t Sel15.1.subseq.fa]
Hostname: [ws101071]

C4 Alignment:
------------
         Query: Sel15
        Target: KI537467.1:subseq(4239730,200203) Balaenoptera acutorostrata scammoni unplaced genomic scaffold scaffold159, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 776
   Query range: 0 -> 162
  Target range: 109184 -> 72348

      1 : MetAlaAlaGlyLeuAspGlyCysLeuLeuProAlaPheGlyLeuArgLeuLeuLeuA :     20
          ||||||!.!|||:!!||||||!! ||||||||||||||||||||||||||||||||||
          MetAlaValGlyMetAspGlyTrpLeuLeuProAlaPheGlyLeuArgLeuLeuLeuA
 109184 : ATGGCGGTCGGGATGGATGGGTGGCTTTTGCCGGCTTTTGGGCTGCGGCTGCTGCTGG : 109127

     21 : laThrValLeuGlnThr  >>>> Target Intron 1 >>>>  ValSerAlaPhe :     29
          ||||||||||||||! !           8906 bp           ||||||||||||
          laThrValLeuGlnMet++                         ++ValSerAlaPhe
 109126 : CGACTGTGCTTCAAATGgt.........................aggtCTCTGCGTTC : 100194

     30 : GlyAlaGluPheSerSerGluSerCysArgGluLeuGlyPheSerSerAsnLeuLeuC :     49
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GlyAlaGluPheSerSerGluSerCysArgGluLeuGlyPheSerSerAsnLeuLeuC
 100193 : GGGGCAGAGTTTTCATCAGAGTCTTGCAGAGAGTTAGGCTTTTCCAGCAACTTGCTCT : 100134

     50 : ysSerSerCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspProAspCysAr :     68
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ysSerSerCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspProAspCysAr
 100133 : GCAGCTCCTGTGATCTACTTGGACAGTTCAACCTTCTTCAACTGGATCCTGACTGTAG : 100077

     69 : gGlyCysCysGlnGluGluAlaGlnPheGluThrLysLys  >>>> Target Intr :     82
          ||||||||||||||||||||||||||||||||||||||||           16612 b
          gGlyCysCysGlnGluGluAlaGlnPheGluThrLysLys++                
 100076 : AGGATGCTGTCAGGAAGAAGCACAATTTGAAACCAAAAAGgt................ : 100033

     83 : on 2 >>>>  LeuTyrAlaGlyAlaIleLeuGluValCysGlyUnkLysLeuGlyAr :     97
          p          |||||||||||||||||||||||||||||||||   |||||||||||
                   ++LeuTyrAlaGlyAlaIleLeuGluValCysGly***LysLeuGlyAr
 100032 : .........agcTGTATGCAGGAGCTATTCTTGAAGTCTGTGGATGAAAATTGGGGAG :  83378

     98 : gPheProGlnValGln{A}  >>>> Target Intron 3 >>>>  {la}PheVal :    105
          ||||||||||||||||{|}           8335 bp           {||}||||||
          gPheProGlnValGln{A}++                         ++{la}PheVal
  83377 : GTTCCCTCAAGTCCAA{G}gt.........................ag{ct}ttcGTC :  75019

    106 : ArgSerAspLysProArgLeuPheArgGlyLeuGlnIleLys  >>>> Target In :    120
          ||||||||||||||||||||||||||||||||||||||||||           2497 
          ArgSerAspLysProArgLeuPheArgGlyLeuGlnIleLys++              
  75018 : AGGAGTGATAAACCCAGACTATTCAGAGGACTACAAATCAAGgt.............. :  74972

    121 : tron 4 >>>>  TyrValArgGlySerAspProValLeuLysLeuLeuAspAspAsn :    134
          bp           |||||||||||||||||||||||||||||||||||||||||||||
                     ++TyrValArgGlySerAspProValLeuLysLeuLeuAspAspAsn
  74971 : ...........agTATGTTCGCGGTTCAGACCCTGTGCTAAAGCTTTTGGACGACAAT :  72435

    135 : GlyAsnIleAlaGluGluLeuSerIleLeuLysTrpAsnThrAspSerValGluGluP :    154
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GlyAsnIleAlaGluGluLeuSerIleLeuLysTrpAsnThrAspSerValGluGluP
  72434 : GGGAACATTGCTGAAGAACTAAGCATCCTCAAATGGAACACAGACAGTGTAGAAGAAT :  72375

    155 : heLeuSerGluLysLeuGluArgIle :    162
          ||||||||||||||||||||||||||
          heLeuSerGluLysLeuGluArgIle
  72374 : TCCTGAGTGAAAAGTTGGAACGCATA :  72349

vulgar: Sel15 0 162 . KI537467.1:subseq(4239730,200203) 109184 72348 - 776 M 25 75 5 0 2 I 0 8902 3 0 2 M 56 168 5 0 2 I 0 16608 3 0 2 M 21 63 S 0 1 5 0 2 I 0 8331 3 0 2 S 1 2 M 16 48 5 0 2 I 0 2493 3 0 2 M 43 129
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	gene	72349	109184	776	-	.	gene_id 1 ; sequence Sel15 ; gene_orientation +
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	cds	109110	109184	.	-	.	
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	exon	109110	109184	.	-	.	insertions 0 ; deletions 0
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	splice5	109108	109109	.	-	.	intron_id 1 ; splice_site "GT"
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	intron	100204	109109	.	-	.	intron_id 1
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	splice3	100204	100205	.	-	.	intron_id 0 ; splice_site "ag"
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	cds	100036	100203	.	-	.	
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	exon	100036	100203	.	-	.	insertions 0 ; deletions 0
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	splice5	100034	100035	.	-	.	intron_id 2 ; splice_site "GT"
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	intron	83424	100035	.	-	.	intron_id 2
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	splice3	83424	83425	.	-	.	intron_id 1 ; splice_site "ag"
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	cds	83360	83423	.	-	.	
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	exon	83360	83423	.	-	.	insertions 0 ; deletions 0
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	splice5	83358	83359	.	-	.	intron_id 3 ; splice_site "GT"
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	intron	75025	83359	.	-	.	intron_id 3
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	splice3	75025	75026	.	-	.	intron_id 2 ; splice_site "ag"
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	cds	74975	75024	.	-	.	
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	exon	74975	75024	.	-	.	insertions 0 ; deletions 0
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	splice5	74973	74974	.	-	.	intron_id 4 ; splice_site "GT"
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	intron	72478	74974	.	-	.	intron_id 4
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	splice3	72478	72479	.	-	.	intron_id 3 ; splice_site "AG"
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	cds	72349	72477	.	-	.	
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	exon	72349	72477	.	-	.	insertions 0 ; deletions 0
KI537467.1:subseq(4239730,200203)	exonerate:protein2genome:local	similarity	72349	109184	776	-	.	alignment_id 1 ; Query Sel15 ; Align 109185 1 75 ; Align 100204 26 168 ; Align 83424 82 63 ; Align 75023 104 48 ; Align 72478 120 129
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
