Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q proteina.fa -t SPS1.2.subseq.fa]
Hostname: [ws101071]

C4 Alignment:
------------
         Query: SPS1
        Target: KI538175.1:subseq(11416055,200215) Balaenoptera acutorostrata scammoni unplaced genomic scaffold scaffold55, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1994
   Query range: 0 -> 392
  Target range: 122608 -> 98210

      1 : MetSerAlaArgGluSerPheAsnProGluSerTyrGluLeuAspLysSerPheArgL :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          MetSerAlaArgGluSerPheAsnProGluSerTyrGluLeuAspLysSerPheArgL
 122608 : ATGTCTGCGCGGGAGTCCTTTAACCCGGAAAGTTATGAATTGGACAAGAGCTTCCGGT : 122551

     21 : euThrArgPheThrGluLeuLysGlyThrGlyCysLysValProGlnAspValLeuGl :     39
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          euThrArgPheThrGluLeuLysGlyThrGlyCysLysValProGlnAspValLeuGl
 122550 : TAACCAGATTCACCGAACTGAAGGGCACCGGCTGCAAAGTGCCCCAAGATGTCCTGCA : 122494

     40 : nLysLeuLeuGluSerLeuGlnGluAsnHisPheGlnGluAspGluGlnPheLeuGly :     58
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          nLysLeuLeuGluSerLeuGlnGluAsnHisPheGlnGluAspGluGlnPheLeuGly
 122493 : GAAATTGCTGGAATCCTTACAGGAGAACCACTTCCAAGAAGATGAGCAGTTTCTTGGA : 122437

     59 : AlaValMetProArgLeu{G}  >>>> Target Intron 1 >>>>  {ly}IleG :     67
          ||||||||||||||||||{|}           4991 bp           {||}||||
          AlaValMetProArgLeu{G}++                         ++{ly}IleG
 122436 : GCAGTTATGCCAAGGCTT{G}gt.........................ag{GC}ATCG : 117419

     68 : lyMetAspThrCysValIleProLeuArgHisGlyGlyLeuSerLeuValGlnThrTh :     86
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          lyMetAspThrCysValIleProLeuArgHisGlyGlyLeuSerLeuValGlnThrTh
 117418 : GGATGGATACCTGTGTCATTCCTCTGAGGCACGGCGGTCTTTCCTTGGTTCAAACCAC : 117362

     87 : rAspTyrIleTyrProIleValAspAspProTyrMetMet  >>>> Target Intr :    100
          ||||||||||||||||||||||||||||||||||||||||           1856 bp
          rAspTyrIleTyrProIleValAspAspProTyrMetMet++                
 117361 : AGATTACATTTATCCCATCGTCGATGACCCTTACATGATGgt................ : 117318

    101 : on 2 >>>>  GlyArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGl :    115
                     |||||||||||||||||||||||||||||||||||||||||||||||
                   ++GlyArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGl
 117317 : .........agGGCAGGATAGCCTGTGCCAACGTCCTCAGCGACCTCTACGCCATGGG : 115419

    116 : yValThrGluCysAspAsnMetLeuMetLeuLeuGlyIleSerAsnLysMetThrAsp :    134
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          yValThrGluCysAspAsnMetLeuMetLeuLeuGlyIleSerAsnLysMetThrAsp
 115418 : GGTCACAGAGTGCGACAACATGCTGATGCTCCTGGGAATCAGCAATAAGATGACCGAC : 115362

    135 : Arg  >>>> Target Intron 3 >>>>  GluArgAspLysValMetProLeuIl :    144
          |||            907 bp           ||||||||||||||||||||||||||
          Arg++                         ++GluArgAspLysValMetProLeuIl
 115361 : AGGgt.........................agGAAAGGGATAAAGTGATGCCCCTAAT : 114425

    145 : eIleGlnGlyPheLysAspAlaAlaGluGluAlaGlyThrSerValThrGlyGlyGln :    163
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          eIleGlnGlyPheLysAspAlaAlaGluGluAlaGlyThrSerValThrGlyGlyGln
 114424 : TATACAGGGTTTTAAAGATGCAGCAGAGGAGGCCGGAACATCTGTAACCGGTGGCCAA : 114368

    164 : ThrValLeuAsnProTrpIleValLeuGlyGlyValAlaThrThrValCysGlnProA :    183
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ThrValLeuAsnProTrpIleValLeuGlyGlyValAlaThrThrValCysGlnProA
 114367 : ACAGTGCTAAATCCCTGGATTGTTTTAGGAGGTGTGGCTACAACTGTCTGCCAGCCCA : 114308

    184 : snGluPheIle{Me}  >>>> Target Intron 4 >>>>  {t}ProAspAsnAl :    191
          |||||||||||{||}           3150 bp           {|}|||||||||||
          snGluPheIle{Me}++                         ++{t}ProAspAsnAl
 114307 : ACGAATTTATC{AT}gt.........................ag{G}CCGGATAACGC : 111134

    192 : aValProGlyAspValLeuValLeuThrLysProLeuGlyThrGlnValAlaValAla :    210
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          aValProGlyAspValLeuValLeuThrLysProLeuGlyThrGlnValAlaValAla
 111133 : AGTGCCAGGCGACGTGCTCGTGCTGACCAAGCCCTTGGGGACGCAGGTGGCTGTGGCC : 111077

    211 : ValHisGlnTrpLeuAspIle  >>>> Target Intron 5 >>>>  ProGluLy :    220
          |||||||||||||||||||||           1994 bp           ||||||||
          ValHisGlnTrpLeuAspIle++                         ++ProGluLy
 111076 : GTGCACCAGTGGCTGGACATTgt.........................agCCTGAGAA : 109053

    221 : sTrpAsnLysIleLysLeuValValThrGlnGluAspValGluLeuAlaTyrGlnGlu :    239
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          sTrpAsnLysIleLysLeuValValThrGlnGluAspValGluLeuAlaTyrGlnGlu
 109052 : GTGGAATAAAATCAAGCTGGTGGTCACCCAGGAGGACGTGGAGCTGGCGTACCAGGAG : 108996

    240 : AlaMetMetAsnMetAlaArgLeuAsnArgThr{A}  >>>> Target Intron 6 :    251
          |||||||||||||||||||||||||||||||||{|}           8745 bp    
          AlaMetMetAsnMetAlaArgLeuAsnArgThr{A}++                    
 108995 : GCGATGATGAACATGGCCAGGCTCAACAGGACA{G}gt.................... : 108957

    252 :  >>>>  {la}AlaGlyLeuMetHisThrPheAsnAlaHisAlaAlaThrAspIleTh :    267
                 {||}|||||||||||||||||||||||||||||||||||||||||||||||
               ++{la}AlaGlyLeuMetHisThrPheAsnAlaHisAlaAlaThrAspIleTh
 108956 : .....ag{CG}GCGGGACTCATGCACACGTTCAACGCCCACGCGGCCACTGACATCAC : 100167

    268 : rGlyPheGlyIleLeuGlyHisAlaGlnAsnLeuAlaLysGlnGlnArgAsnGluVal :    286
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rGlyPheGlyIleLeuGlyHisAlaGlnAsnLeuAlaLysGlnGlnArgAsnGluVal
 100166 : GGGCTTCGGGATCCTGGGCCACGCGCAGAACCTGGCCAAGCAGCAGAGGAATGAGGTG : 100110

    287 : SerPheValIleHisAsnLeuProValLeuAlaLysMetAlaAlaValSerLysAlaC :    306
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          SerPheValIleHisAsnLeuProValLeuAlaLysMetAlaAlaValSerLysAlaC
 100109 : TCCTTTGTGATTCACAACCTCCCAGTCCTGGCCAAGATGGCAGCCGTGAGCAAGGCCT : 100050

    307 : ysGlyAsnMetPheGlyLeuMetHisGlyThrCysProGluThrSer{G}  >>>> T :    322
          |||||||||||||||||||||||||||||||||||||||||||||||{|}        
          ysGlyAsnMetPheGlyLeuMetHisGlyThrCysProGluThrSer{G}++      
 100049 : GCGGAAACATGTTTGGCCTCATGCACGGGACCTGCCCAGAGACATCA{G}gt...... :  99999

    323 : arget Intron 7 >>>>  {ly}GlyLeuLeuIleCysLeuProArgGluGlnAla :    333
             1579 bp           {||}|||||||||||||||||||||||||||||||||
                             ++{ly}GlyLeuLeuIleCysLeuProArgGluGlnAla
  99998 : ...................ag{GA}GGCCTTCTAATCTGTTTACCGCGTGAGCAAGCA :  98390

    334 : AlaArgPheCysAlaGluIleLysSerProLysTyrGlyGluGlyHisGlnAlaTrpI :    353
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AlaArgPheCysAlaGluIleLysSerProLysTyrGlyGluGlyHisGlnAlaTrpI
  98389 : GCTCGGTTCTGTGCAGAGATAAAGTCCCCCAAATACGGTGAAGGCCACCAAGCATGGA :  98330

    354 : leIleGlyIleValGluLysGlyAsnArgThrAlaArgIleIleAspLysProArgIl :    372
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          leIleGlyIleValGluLysGlyAsnArgThrAlaArgIleIleAspLysProArgIl
  98329 : TTATTGGGATCGTGGAGAAGGGTAACCGCACGGCCAGGATCATAGACAAACCCCGGAT :  98273

    373 : eIleGluValAlaProGlnValAlaThrGlnAsnValAsnProThrProGlyAlaThr :    391
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          eIleGluValAlaProGlnValAlaThrGlnAsnValAsnProThrProGlyAlaThr
  98272 : CATCGAGGTCGCGCCACAGGTGGCCACCCAGAATGTGAACCCCACACCTGGTGCCACC :  98216

    392 : Ser :    392
          |||
          Ser
  98215 : TCT :  98211

vulgar: SPS1 0 392 . KI538175.1:subseq(11416055,200215) 122608 98210 - 1994 M 64 192 S 0 1 5 0 2 I 0 4987 3 0 2 S 1 2 M 34 102 5 0 2 I 0 1852 3 0 2 M 36 108 5 0 2 I 0 903 3 0 2 M 51 153 S 0 2 5 0 2 I 0 3146 3 0 2 S 1 1 M 30 90 5 0 2 I 0 1990 3 0 2 M 33 99 S 0 1 5 0 2 I 0 8741 3 0 2 S 1 2 M 70 210 S 0 1 5 0 2 I 0 1575 3 0 2 S 1 2 M 70 210
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	gene	98211	122608	1994	-	.	gene_id 1 ; sequence SPS1 ; gene_orientation +
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	cds	122416	122608	.	-	.	
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	exon	122416	122608	.	-	.	insertions 0 ; deletions 0
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	splice5	122414	122415	.	-	.	intron_id 1 ; splice_site "GT"
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	intron	117425	122415	.	-	.	intron_id 1
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	splice3	117425	117426	.	-	.	intron_id 0 ; splice_site "AG"
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	cds	117321	117424	.	-	.	
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	exon	117321	117424	.	-	.	insertions 0 ; deletions 0
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	splice5	117319	117320	.	-	.	intron_id 2 ; splice_site "GT"
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	intron	115465	117320	.	-	.	intron_id 2
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	splice3	115465	115466	.	-	.	intron_id 1 ; splice_site "AG"
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	cds	115357	115464	.	-	.	
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	exon	115357	115464	.	-	.	insertions 0 ; deletions 0
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	splice5	115355	115356	.	-	.	intron_id 3 ; splice_site "GT"
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	intron	114450	115356	.	-	.	intron_id 3
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	splice3	114450	114451	.	-	.	intron_id 2 ; splice_site "AG"
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	cds	114295	114449	.	-	.	
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	exon	114295	114449	.	-	.	insertions 0 ; deletions 0
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	splice5	114293	114294	.	-	.	intron_id 4 ; splice_site "GT"
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	intron	111145	114294	.	-	.	intron_id 4
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	splice3	111145	111146	.	-	.	intron_id 3 ; splice_site "AG"
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	cds	111054	111144	.	-	.	
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	exon	111054	111144	.	-	.	insertions 0 ; deletions 0
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	splice5	111052	111053	.	-	.	intron_id 5 ; splice_site "GT"
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	intron	109060	111053	.	-	.	intron_id 5
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	splice3	109060	109061	.	-	.	intron_id 4 ; splice_site "AG"
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	cds	108960	109059	.	-	.	
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	exon	108960	109059	.	-	.	insertions 0 ; deletions 0
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	splice5	108958	108959	.	-	.	intron_id 6 ; splice_site "GT"
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	intron	100215	108959	.	-	.	intron_id 6
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	splice3	100215	100216	.	-	.	intron_id 5 ; splice_site "AG"
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	cds	100002	100214	.	-	.	
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	exon	100002	100214	.	-	.	insertions 0 ; deletions 0
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	splice5	100000	100001	.	-	.	intron_id 7 ; splice_site "GT"
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	intron	98423	100001	.	-	.	intron_id 7
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	splice3	98423	98424	.	-	.	intron_id 6 ; splice_site "ag"
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	cds	98211	98422	.	-	.	
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	exon	98211	98422	.	-	.	insertions 0 ; deletions 0
KI538175.1:subseq(11416055,200215)	exonerate:protein2genome:local	similarity	98211	122608	1994	-	.	alignment_id 1 ; Query SPS1 ; Align 122609 1 192 ; Align 117423 66 102 ; Align 115465 100 108 ; Align 114450 136 153 ; Align 111144 188 90 ; Align 109060 218 99 ; Align 100213 252 210 ; Align 98421 323 210
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
