Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q proteina.fa -t MsrA.2.subseq.fa]
Hostname: [ws101071]

C4 Alignment:
------------
         Query: MsrA
        Target: KI538342.1:subseq(8853677,200164) Balaenoptera acutorostrata scammoni unplaced genomic scaffold scaffold70, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 323
   Query range: 15 -> 225
  Target range: 6803 -> 81909

    16 : GlyAsnSerAlaSerAsnIleValSerProGlnAlaAlaLeuProGlyArgLysGluAla :    35
         ..!|||!!!||||||..!:!::!!|||  !   :!!:!!:!! !!!.!!:!   ...  !
         SerAsnCysAlaSerArgLeuMetSerPheThrSerSerIleThrAlaLysLeuSerGln
  6804 : TCTAACTGTGCTTCACGTTTGATGTCCTTTACCTCCTCCATCACCGCAAAGCTTTCCCAG :  6861

    36 : IleAlaValAlaAlaLysHisHisValAsnGlyAsnArgThrValGluProPhe{Pr}   :    54
            |||:!!  !|||  !  !:!!:!!:::|||||| !!  !  !||| !!!!.{||}  
         ***AlaLeuArgAlaProSerTyrIleSerGlyAsnTrpGlySerGluThrLeu{Pr}-+
  6862 : TAGGCGCTGAGAGCCCCGTCCTACATCTCAGGAAATTGGGGGTCAGAGACTTTG{CC}ct :  6920

    55 : >>>> Target Intron 1 >>>>  {o}GluGlyThrGlnMetAlaLeuPheGlyMet :    64
                  3342 bp           {|}     !  !   ...! !|||||||||   
                                  ++{o}ProLys***GlyGlnGluLeuPheGlyGly
  6921 : .........................ag{C}CCTAAGTAGGGCCAAGAGCtctttggtggg : 10290

    65 : GlyCys{Ph}  >>>> Target Intron 2 >>>>  {e}TrpGlyAlaGluArgLys :    73
         |||   {  }           24857 bp          {!} ! |||! !..!!.!   
         GlyVal{Gl}++                         ++{y}ArgGlyGluArgHisVal
 10291 : ggggtg{gg}gt.........................ag{T}CGTGGTGAAAGGCATGTC : 35174

    74 : PheTrpThrLeuLysGlyVal  >>>> Target Intron 3 >>>>  TyrSerThrG :    84
         |||||||||!!!  !|||  !            752 bp            ! |||  !!
         PheTrpThrPheProGlyTrp++                         ++GlnSerGlnP
 35175 : TTCTGGACCTTCCCAGGGTGGgt.........................agCAATCCCAGC : 35959

    85 : lnValGlyTyrAlaGly  >>>> Target Intron 4 >>>>  GlyTyrThrProAs :    94
             !||||||  !|||           33461 bp          |||   ...|||  
         roCysGlyTyrArgGly++                         ++GlySerAsnProCy
 35960 : CCTGTGGCTACAGGGGGgt.........................agggctcgaacccatg : 69450

    95 : nProThrTyrGluGluValCysSerGlyArgThrGlyHisAla  >>>> Target Int :   109
          |||   :::   :::......|||            |||              1688 b
         sProLeuHisTrpGlnAlaAlaSerGlnProLeuHisHisGln+-               
 69451 : tcccctgcattggcaggcagcttctcaaccactgcaccaccaggg............... : 69497

   110 : ron 5 >>>>  GluValValArgValValTyrGlnProGlu  >>>> Target Intr :   119
         p           :::::::::::::::|||||||||   |||           7011 bp
                   ++GlnIleLeuLysMetValTyrGln***Glu++                
 69498 : ..........agcagattttaaaaatggtttatcagtaagaggt................ : 71215

   120 : on 6 >>>>  ArgIleSerPheGlu  >>>> Target Intron 7 >>>>  GluLe :   125
                      !|||!!!|||.!.           1222 bp           :!!  
                  ++LeuIleThrPheHis++                         ++LysAl
 71216 : .........agTTAATCACCTTTCATgt.........................agAAAGC : 79464

   126 : uLeu{L}  >>>> Target Intron 8 >>>>  {ys}ValPheTrpGluAsnHisAs :   134
         !! !{ }           1088 bp           { !}! !!::  !!!:! !!!. !
         aPro{V}++                         ++{al}GlyTrpMetAspIleGlnLy
 79465 : CCCG{G}gt.........................ag{TG}GGCTGGATGGACATTCAGAA : 80579

   135 : pProThrGlnGlyLeuArgGlnGlyAsnAspHisGlySerGlnTyrArgSerAlaIleTy :   154
            !|||  !||||||!!!  ! !!:::! !!.!|||! !  !     !|||  !! !  
         sValThrThrGlyLeuSerThrArgSerGlyArgGlyPheThrLeuAspSerLysThrAr
 80580 : AGTCACGACAGGGCTCAGCACAAGGTCAGGCCGTGGATTCACGCTGGACTCAAAGACTAG : 80639

   155 : rProThrSerAlaGluHisMet{Gl}  >>>> Target Intron 9 >>>>  {u}Al :   163
          |||||| !! !!...   ..!{..}            495 bp           {.}  
         gProThrArgProSerTrpGln{Se}++                         ++{r}Hi
 80640 : ACCCACCCGCCCTTCCTGGCAG{AG}gt.........................ag{C}CA : 81161

   164 : aSerLeuArgSerLysGluAspTyrGlnLys  >>>> Target Intron 10 >>>>  :   174
         !|||! !|||.!!  !.....!  !|||               560 bp           
         sSerArgArgGlyGlySerSerValGlnPro++                          +
 81162 : CAGCCGGCGAGGGGGGTCCTCCGTCCAGCCTgt..........................a : 81752

   175 :  ValLeuSerGluHisGlyPheGlyLeuIleThrThrAspIleArgGluGlyGlnThrPh :   193
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         +ValLeuSerGluHisGlyPheGlyLeuIleThrThrAspIleArgGluGlyGlnThrPh
 81753 : gGTTCTGTCAGAGCACGGCTTTGGCCTGATCACCACTGACATCCGGGAGGGACAGACTTT : 81811

   194 : eTyrTyrAlaGluAspTyrHisGlnGlnTyrLeuSerLysIleProAsnGlyTyrCysGl :   213
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         eTyrTyrAlaGluAspTyrHisGlnGlnTyrLeuSerLysIleProAsnGlyTyrCysGl
 81812 : CTACTACGCGGAGGATTACCACCAGCAGTACCTGAGCAAGATCCCCAACGGGTACTGCGG : 81871

   214 : yLeuGlyGlyThrGlyValSerCysProLeuGlyIle :   225
         |||||||||||||||||||||||||||||||||||||
         yLeuGlyGlyThrGlyValSerCysProLeuGlyIle
 81872 : CCTCGGGGGCACCGGAGTGTCCTGCCCGCTGGGTATT : 81909

vulgar: MsrA 15 225 . KI538342.1:subseq(8853677,200164) 6803 81909 + 323 M 38 114 S 0 2 5 0 2 I 0 3338 3 0 2 S 1 1 M 12 36 S 0 2 5 0 2 I 0 24853 3 0 2 S 1 1 M 13 39 5 0 2 I 0 748 3 0 2 M 9 27 5 0 2 I 0 33457 3 0 2 M 19 57 5 0 2 I 0 1684 3 0 2 M 10 30 5 0 2 I 0 7007 3 0 2 M 5 15 5 0 2 I 0 1218 3 0 2 M 3 9 S 0 1 5 0 2 I 0 1084 3 0 2 S 1 2 M 34 102 S 0 2 5 0 2 I 0 491 3 0 2 S 1 1 M 11 33 5 0 2 I 0 556 3 0 2 M 52 156
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	gene	6804	81909	323	+	.	gene_id 1 ; sequence MsrA ; gene_orientation +
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	cds	6804	6919	.	+	.	
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	exon	6804	6919	.	+	.	insertions 0 ; deletions 0
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice5	6920	6921	.	+	.	intron_id 1 ; splice_site "CT"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	intron	6920	10261	.	+	.	intron_id 1
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice3	10260	10261	.	+	.	intron_id 0 ; splice_site "AG"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	cds	10262	10300	.	+	.	
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	exon	10262	10300	.	+	.	insertions 0 ; deletions 0
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice5	10301	10302	.	+	.	intron_id 2 ; splice_site "gt"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	intron	10301	35157	.	+	.	intron_id 2
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice3	35156	35157	.	+	.	intron_id 1 ; splice_site "AG"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	cds	35158	35197	.	+	.	
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	exon	35158	35197	.	+	.	insertions 0 ; deletions 0
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice5	35198	35199	.	+	.	intron_id 3 ; splice_site "GT"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	intron	35198	35949	.	+	.	intron_id 3
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice3	35948	35949	.	+	.	intron_id 2 ; splice_site "AG"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	cds	35950	35976	.	+	.	
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	exon	35950	35976	.	+	.	insertions 0 ; deletions 0
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice5	35977	35978	.	+	.	intron_id 4 ; splice_site "GT"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	intron	35977	69437	.	+	.	intron_id 4
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice3	69436	69437	.	+	.	intron_id 3 ; splice_site "ag"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	cds	69438	69494	.	+	.	
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	exon	69438	69494	.	+	.	insertions 0 ; deletions 0
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice5	69495	69496	.	+	.	intron_id 5 ; splice_site "gg"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	intron	69495	71182	.	+	.	intron_id 5
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice3	71181	71182	.	+	.	intron_id 4 ; splice_site "ag"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	cds	71183	71212	.	+	.	
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	exon	71183	71212	.	+	.	insertions 0 ; deletions 0
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice5	71213	71214	.	+	.	intron_id 6 ; splice_site "gt"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	intron	71213	78223	.	+	.	intron_id 6
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice3	78222	78223	.	+	.	intron_id 5 ; splice_site "AG"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	cds	78224	78238	.	+	.	
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	exon	78224	78238	.	+	.	insertions 0 ; deletions 0
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice5	78239	78240	.	+	.	intron_id 7 ; splice_site "GT"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	intron	78239	79460	.	+	.	intron_id 7
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice3	79459	79460	.	+	.	intron_id 6 ; splice_site "AG"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	cds	79461	79470	.	+	.	
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	exon	79461	79470	.	+	.	insertions 0 ; deletions 0
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice5	79471	79472	.	+	.	intron_id 8 ; splice_site "GT"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	intron	79471	80558	.	+	.	intron_id 8
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice3	80557	80558	.	+	.	intron_id 7 ; splice_site "AG"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	cds	80559	80664	.	+	.	
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	exon	80559	80664	.	+	.	insertions 0 ; deletions 0
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice5	80665	80666	.	+	.	intron_id 9 ; splice_site "GT"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	intron	80665	81159	.	+	.	intron_id 9
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice3	81158	81159	.	+	.	intron_id 8 ; splice_site "AG"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	cds	81160	81193	.	+	.	
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	exon	81160	81193	.	+	.	insertions 0 ; deletions 0
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice5	81194	81195	.	+	.	intron_id 10 ; splice_site "GT"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	intron	81194	81753	.	+	.	intron_id 10
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	splice3	81752	81753	.	+	.	intron_id 9 ; splice_site "AG"
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	cds	81754	81909	.	+	.	
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	exon	81754	81909	.	+	.	insertions 0 ; deletions 0
KI538342.1:subseq(8853677,200164)	exonerate:protein2genome:local	similarity	6804	81909	323	+	.	alignment_id 1 ; Query MsrA ; Align 6804 16 114 ; Align 10263 55 36 ; Align 35159 68 39 ; Align 35950 81 27 ; Align 69438 90 57 ; Align 71183 109 30 ; Align 78224 119 15 ; Align 79461 124 9 ; Align 80561 128 102 ; Align 81161 163 33 ; Align 81754 174 156
# --- END OF GFF DUMP ---
#

