Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q proteina.fa -t GPx_2.1.subseq.fa]
Hostname: [ws101071]

C4 Alignment:
------------
         Query: GPx_2
        Target: KI537586.1:subseq(2016838,200149) Balaenoptera acutorostrata scammoni unplaced genomic scaffold scaffold197, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 625
   Query range: 0 -> 127
  Target range: 100426 -> 99653

      1 : ArgGlyTyrValCysIleIleThrAsnValAlaSerGlnUnkGlyLysThrGluValA :     20
          ||||||||||||||||||:!!||||||||||||||||||   ||||||||||||||||
          ArgGlyTyrValCysIleValThrAsnValAlaSerGln***GlyLysThrGluValA
 100426 : AGGGGCTACGTGTGCATCGTCACCAATGTGGCCTCGCAATGAGGCAAGACAGAGGTAA : 100369

     21 : snTyrThrGlnLeuValAspLeuHisAlaArgPheAlaGluArgGlyLeuArgIleLe :     39
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          snTyrThrGlnLeuValAspLeuHisAlaArgPheAlaGluArgGlyLeuArgIleLe
 100368 : ACTACACTCAGCTGGTCGACCTGCACGCCCGATTCGCTGAGCGTGGTTTACGGATCCT : 100312

     40 : uAlaPheProCysAsnGlnPheGlyLysGln  >>>> Target Intron 1 >>>> :     50
          |||||||||||||||||||||||||||||||            133 bp         
          uAlaPheProCysAsnGlnPheGlyLysGln++                         
 100311 : GGCCTTCCCTTGCAACCAGTTTGGGAAGCAGgt......................... : 100277

     51 :   GluProGlySerAsnAlaGluIleLysGluPheAlaAlaGlyHisAsnValLysPh :     68
            ||||||||||||||||||||||||||||||||||||||||||:!!|||||||||||
          ++GluProGlySerAsnAlaGluIleLysGluPheAlaAlaGlyTyrAsnValLysPh
 100276 : agGAGCCAGGGAGTAACGCCGAGATCAAAGAGTTCGCTGCCGGCTATAACGTCAAATT : 100092

     69 : eAspMetPheSerLysIleCysValAsnGlyAspAspAlaHisProLeuTrpLysTrp :     87
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          eAspMetPheSerLysIleCysValAsnGlyAspAspAlaHisProLeuTrpLysTrp
 100091 : CGACATGTTCAGCAAGATCTGTGTGAATggggatgatgcccacccactgTGGAAGTGG : 100035

     88 : MetLysValGlnProAsnGlyArgGlyMetLeuGly{As}  >>>> Target Intr :    100
          |||||||||||||||!!.|||||||||||||||   {  }            100 bp
          MetLysValGlnProLysGlyArgGlyMetLeuGlu{Cy}+-                
 100034 : ATGAAAGTCCAGCCCAAGGGGAGGGGCATGCtggag{tg}gg................ :  99992

    101 : on 2 >>>>  {n}AlaIleLysTrpAsnPheThrLys  >>>> Target Intron :    109
                     {!}||||||||||||||||||||||||            159 bp  
                   ++{s}AlaIleLysTrpAsnPheThrLys++                  
  99991 : .........ag{T}GCCATCAAATGGAACTTCACCAAGgt.................. :  99867

    110 :  3 >>>>  PheLeuIleAspLysAsnGlyCysValValLysArgTyrGlyProMetG :    125
                   |||||||||||||||||||||||||||||||||||||||||||||||||
                 ++PheLeuIleAspLysAsnGlyCysValValLysArgTyrGlyProMetG
  99866 : .......agTTCCTCATTGACAAGAACGGCTGTGTGGTGAAGCGGTACGGTCCCATGG :  99662

    126 : luGluPro :    127
          ||||||||
          luGluPro
  99661 : AAGAGCCC :  99654

vulgar: GPx_2 0 127 . KI537586.1:subseq(2016838,200149) 100426 99653 - 625 M 49 147 5 0 2 I 0 129 3 0 2 M 50 150 S 0 2 5 0 2 I 0 96 3 0 2 S 1 1 M 8 24 5 0 2 I 0 155 3 0 2 M 19 57
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KI537586.1:subseq(2016838,200149)	exonerate:protein2genome:local	gene	99654	100426	625	-	.	gene_id 1 ; sequence GPx_2 ; gene_orientation +
KI537586.1:subseq(2016838,200149)	exonerate:protein2genome:local	cds	100280	100426	.	-	.	
KI537586.1:subseq(2016838,200149)	exonerate:protein2genome:local	exon	100280	100426	.	-	.	insertions 0 ; deletions 0
KI537586.1:subseq(2016838,200149)	exonerate:protein2genome:local	splice5	100278	100279	.	-	.	intron_id 1 ; splice_site "GT"
KI537586.1:subseq(2016838,200149)	exonerate:protein2genome:local	intron	100147	100279	.	-	.	intron_id 1
KI537586.1:subseq(2016838,200149)	exonerate:protein2genome:local	splice3	100147	100148	.	-	.	intron_id 0 ; splice_site "AG"
KI537586.1:subseq(2016838,200149)	exonerate:protein2genome:local	cds	99995	100146	.	-	.	
KI537586.1:subseq(2016838,200149)	exonerate:protein2genome:local	exon	99995	100146	.	-	.	insertions 0 ; deletions 0
KI537586.1:subseq(2016838,200149)	exonerate:protein2genome:local	splice5	99993	99994	.	-	.	intron_id 2 ; splice_site "gg"
KI537586.1:subseq(2016838,200149)	exonerate:protein2genome:local	intron	99895	99994	.	-	.	intron_id 2
KI537586.1:subseq(2016838,200149)	exonerate:protein2genome:local	splice3	99895	99896	.	-	.	intron_id 1 ; splice_site "AG"
KI537586.1:subseq(2016838,200149)	exonerate:protein2genome:local	cds	99870	99894	.	-	.	
KI537586.1:subseq(2016838,200149)	exonerate:protein2genome:local	exon	99870	99894	.	-	.	insertions 0 ; deletions 0
KI537586.1:subseq(2016838,200149)	exonerate:protein2genome:local	splice5	99868	99869	.	-	.	intron_id 3 ; splice_site "GT"
KI537586.1:subseq(2016838,200149)	exonerate:protein2genome:local	intron	99711	99869	.	-	.	intron_id 3
KI537586.1:subseq(2016838,200149)	exonerate:protein2genome:local	splice3	99711	99712	.	-	.	intron_id 2 ; splice_site "AG"
KI537586.1:subseq(2016838,200149)	exonerate:protein2genome:local	cds	99654	99710	.	-	.	
KI537586.1:subseq(2016838,200149)	exonerate:protein2genome:local	exon	99654	99710	.	-	.	insertions 0 ; deletions 0
KI537586.1:subseq(2016838,200149)	exonerate:protein2genome:local	similarity	99654	100426	625	-	.	alignment_id 1 ; Query GPx_2 ; Align 100427 1 147 ; Align 100147 50 150 ; Align 99894 101 24 ; Align 99711 109 57
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
