
genewise output
Score 1061.54 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000888_2.0   21 VDDGASVQEVLSEITNQRTVPNIFVNKVHMGGCEQTFQ            
                     +DDGASVQEVLSEITNQRTVPNIFVNKVHMGGCEQTFQ            
                     LDDGASVQEVLSEITNQRTVPNIFVNKVHMGGCEQTFQ            
KK953348.1:subs 1000 tggggagcggctgaaacaagcaatgaagcaggtgcatc            
                     taagcgtaattcatcaagctcatttaatatgggaacta            
                     attgcttaaggagcttgatacttcgtaatgtatggtcg            


SPP00000888_2.0   59                        AHQSGVLEKLLQGDSAYDYDLIVIGG 
                                            AHQSGVLEKLLQGDSAYDYDLIVIGG 
                                            AHQSGVLEKLLQGDSAYDYDLIVIGG 
KK953348.1:subs 1114 GTAATAA  Intron 1   TAGgccaggtgacccggtgtgtgcagagg 
                     <0-----[1114 : 3082]-0>caaggttaattagaccaaaattttgg 
                                            atgttaaggctgttaatctcctcttc 


SPP00000888_2.0   85 GSGGLACAQ                       EAAVLGKKVMVLDFVLP 
                     GSGGLACAQ                       EAAVLGKKVMVLDFVLP 
                     GSGGLACAQ                       EAAVLGKKVMVLDFVLP 
KK953348.1:subs 3161 gtggcgtgcGTAGGAA  Intron 2   TAGggggtgaagagcgtgcc 
                     gcggtcgca<0-----[3188 : 3427]-0>accttgaattttatttc 
                     tttctattg                       atctgagatggactggg 


SPP00000888_2.0  111 SPQGTSW                          LGGTCVNVGCIPKKLM 
                     SPQGTSW                          LGGTCVNVGCIPKKLM 
                     SPQGTSW          G:G[ggt]        LGGTCVNVGCIPKKLM 
KK953348.1:subs 3479 tccgattGGTAAGCT  Intron 3   CAGGTcggatgaggtacaata 
                     ccagccg <1-----[3501 : 5201]-1>  tggcgtatggtcaatt 
                     cggcgcg                          tttttacaccttgggg 


SPP00000888_2.0  135 HQAALLGQALIDSRKFGWEYNQQ                           
                     HQAALLGQALIDSRKFGWEYNQQ                           
                     HQAALLGQALIDSRKFGWEYNQQ          V:V[gtg]         
KK953348.1:subs 5252 ccggctgcgtagtaatgtgtaccGGTGGGTA  Intron 4   CAGTG 
                     aaccttgacttacgatggaaaaa <1-----[5322 :10984]-1>   
                     tatctgggcatcagatcggttaa                           


SPP00000888_2.0  159 KHNWETMTEAIQNHIGSLNWGYRLSLREKAVAYVNSYGEFVEHHKIK   
                     KHNWETMTEAIQNHIGSLNWGYRLSLREKAVAYVNSYGEFVEHHKIK   
                     KHNWETMTEAIQNHIGSLNWGYRLSLREKAVAYVNSYGEFVEHHKIK   
KK953348.1:subs10987 acatgaaaggacacagtcatgtacttagagggtgattggtggccaaa   
                     aaagactcactaaatgctaggagtctgaactcatacagattaaaata   
                     gccggtgaactgcccctccgccgggggggtgccccctagttattaag   


SPP00000888_2.0  206                        ATNRKGQETCY------TAAKFVIAT 
                                            ATNRKGQETCY      TAAKFVIAT 
                                            ATNRKGQETCYTAAKF!TAAKFVIAT 
KK953348.1:subs11128 GTACTCT  Intron 5   AAGgaaaagcgattaggat1aggatgaga 
                     <0-----[11128:12547]-0>ccagagaacgacccat cccatttcc 
                                            actaaagattcttcat ttcatctaa 


SPP00000888_2.0  226 GERPRYLGIQGDKEYCIT                          DDLFS 
                     GERPRYLGIQGDKEYCIT                          DDLFS 
                     GERPRYLGIQGDKEYCIT           S:S[agt]       DDLFS 
KK953348.1:subs12624 ggaccttgacggagttaaAGGTGAGAT  Intron 6   CAGTggctt 
                     gagcgatgtagaaaagtc  <2-----[12680:13526]-2> aattc 
                     tggagtagcaataacctc                          tcttt 


SPP00000888_2.0  250 LPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQEMAE 
                     LPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQEMAE 
                     LPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQEMAE 
KK953348.1:subs13543 ccttcgaatggggttggcgtggtcggcgtggagagctacccgtgcgagg 
                     tcagcgactttgccatctagcgttcgtgtatctttgctttggtaaatca 
                     gttctcagaagtatcttgatagtggcccgtcgtggcactttcttaggag 


SPP00000888_2.0  299 KVGSYMEQHGVKFLRKFVPVM                       IQQLE 
                     KVGSYMEQHGVKFLRKFVPVM                       IQQLE 
                     KVGSYMEQHGVKFLRKFVPVM                       IQQLE 
KK953348.1:subs13690 aggttagccggattaatgcgaGTAAGTC  Intron 7   CAGacctg 
                     atgcataaagtattgattctt<0-----[13753:14940]-0>taata 
                     agtccgaatttgcaaacgtgg                       tgggg 


SPP00000888_2.0  325 KGSPGKLRVVAESTEGPGAVEGVYNT                        
                     KGSPGKLRVVAESTEGPGAVEGVYNT                        
                     KGSPGKLRVVAESTEGPGAVEGVYNT                        
KK953348.1:subs14956 agtcgacaggggtaggcggggggtaaGTAAGTT  Intron 8   CAG 
                     agccgatgttcaccagcgctagtaac<0-----[15034:25881]-0> 
                     atctaggaagtactagacttaaacca                        


SPP00000888_2.0  351 VLLAIGRDSCTRKIGLEKIGVKINE                         
                     VLLAIGRDSCTRKIGLEKIGVKINE                         
                     VLLAIGRDSCTRKIGLEKIGVKINE           K:K[aag]      
KK953348.1:subs25882 gttgagcgttaaaagtgaaggaaagAAGTAAGTC  Intron 9      
                     tttctggacgcgatgtaatgtataa  <2-----[25959:26515]   
                     tgaatttcctagaacgggttcactg                         


SPP00000888_2.0  376     SGKIPVNDVEQTNVPYVYAIGDILEGKLELTPVAIQAGKLLARRL 
                         SGKIPVNDVEQTNVPYVYAIGDILEGKLELTPVAIQAGKLLARRL 
                         SGKIPVNDVEQTNVPYVYAIGDILEGKLELTPVAIQAGKLLARRL 
KK953348.1:subs26513 TAGGagaacgagggcaagctgtgaggacggacgcacggacggaccgcac 
                     -2> ggatctaataacatcatactgattagatatcctctacgattcggt 
                         tcaaacctgggccgctttctgctggtatgcttccaggcgggtaat 


SPP00000888_2.0  422 FGGRLEKASFL                       CDYINVPTTVFTPLE 
                     FGGRLEKASFL                       CDYINVPTTVFTPLE 
                     FGGRLEKASFL                       CDYINVPTTVFTPLE 
KK953348.1:subs26652 tggctgagattGTGTTGT  Intron 10  CAGtgtaagcaagtactg 
                     tgggtaacgtt<0-----[26685:30771]-0>gaatatcccttccta 
                     tgctaagatca                       tttttgatagtttga 


SPP00000888_2.0  448 YGCCGLSEEKAIEVHKKENLE                       VYHTL 
                     YGCCGLSEEKAIEVHKKENLE                       VYHTL 
                     YGCCGLSEEKAIEVHKKENLE                       VYHTL 
KK953348.1:subs30817 tgttgttggagaggcaagacgGTAAGAT  Intron 11  CAGgtcat 
                     aggggtcaaactataaaaata<0-----[30880:52012]-0>taact 
                     tcctaataggttagtgagtga                       gtttg 


SPP00000888_2.0  474 FWPLEWTVAGRDNNTCYAKIICNKFDN                       
                     FWPLEWTVAGRDNNTCYAKIICNKFDN                       
                     FWPLEWTVAGRDNNTCYAKIICNKFDN                       
KK953348.1:subs52028 ttccgtagggagaaattgaaataatgaGTATGTA  Intron 12     
                     tgctagctcggaaacgacattgaataa<0-----[52109:54714]   
                     cgttaggatcacctttcagatctacct                       


SPP00000888_2.0  501    ERVVGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE  
                        ERVVGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE  
                        ERVVGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE  
KK953348.1:subs54712 AAGgcgggtcacgcaggggacgtgggaatgcaacccggaagaccatgg  
                     -0>agttgtattgcacgatcagtccctaggtcaattaactgtaccgga  
                        gagaatcttagtttgtcaatatagatgcgaggctcctatccgttg  


SPP00000888_2.0  546                        VFTTLEITKASGLDITQKGC       
                                            VFTTLEITKASGLDITQKGC       
                                            VFTTLEITKASGLDITQKGC       
KK953348.1:subs54850 GTGCGGA  Intron 13  CAGgtaatgaaagtgcgaacagt       
                     <0-----[54850:55062]-0>ttcctatcaccgtatcaagg       
                                            gcacgacagagaacctgacc       


//
Making a G in phase 1 intron
Making a V in phase 1 intron
Making a S in phase 2 intron
Making a K in phase 2 intron
>KK953348.1:subseq(107979,55903).pep
LDDGASVQEVLSEITNQRTVPNIFVNKVHMGGCEQTFQAHQSGVLEKLLQGDSAYDYDLI
VIGGGSGGLACAQEAAVLGKKVMVLDFVLPSPQGTSWGLGGTCVNVGCIPKKLMHQAALL
GQALIDSRKFGWEYNQQVKHNWETMTEAIQNHIGSLNWGYRLSLREKAVAYVNSYGEFVE
HHKIKATNRKGQETCYTAAKFXTAAKFVIATGERPRYLGIQGDKEYCITSDDLFSLPYCP
GKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQEMAEKVGSYMEQHGVKFLRK
FVPVMIQQLEKGSPGKLRVVAESTEGPGAVEGVYNTVLLAIGRDSCTRKIGLEKIGVKIN
EKSGKIPVNDVEQTNVPYVYAIGDILEGKLELTPVAIQAGKLLARRLFGGRLEKASFLCD
YINVPTTVFTPLEYGCCGLSEEKAIEVHKKENLEVYHTLFWPLEWTVAGRDNNTCYAKII
CNKFDNERVVGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTLEITK
ASGLDITQKGC
//
>KK953348.1:subseq(107979,55903).[1000:12580].sp
TTAGATGATGGGGCCAGTGTTCAAGAAGTGCTGTCAGAGATCACTAATCAGAGAACTGTA
CCCAATATTTTCGTGAATAAAGTACATATGGGTGGATGTGAGCAGACTTTCCAGGCACAT
CAGAGTGGTGTATTAGAGAAGCTCCTTCAGGGTGATTCAGCATATGACTATGACCTCATT
GTCATTGGTGGCGGTTCTGGTGGCCTTGCATGTGCTCAGGAAGCTGCCGTTTTGGGAAAG
AAAGTTATGGTGCTAGACTTTGTGCTGCCGTCCCCGCAGGGCACGTCCTGGGGTCTTGGT
GGTACTTGTGTAAACGTAGGCTGCATTCCTAAGAAGTTGATGCATCAAGCTGCCCTTTTG
GGGCAGGCCTTAATTGACTCAAGGAAATTTGGCTGGGAGTATAATCAACAAGTGAAGCAC
AACTGGGAGACTATGACAGAAGCCATTCAGAACCACATCGGCTCTCTCAACTGGGGCTAC
AGGCTGTCGTTGAGGGAGAAGGCTGTGGCCTACGTCAACTCCTATGGAGAGTTTGTTGAA
CATCATAAAATAAAGGCAACCAATAGAAAAGGACAGGAAACTTGTTAC
>KK953348.1:subseq(107979,55903).[12597:55122].sp
ACTGCTGCCAAATTTGTCATTGCAACAGGTGAGAGGCCACGGTATTTAGGGATCCAAGGA
GATAAAGAATACTGCATTACCAGTGATGACCTTTTTTCTCTGCCTTATTGCCCTGGCAAA
ACGTTAGTAGTGGGTGCATCTTACGTTGCTCTGGAATGTGCAGGGTTTCTGGCGGGCCTC
GGCTTGGATGTCACGGTTATGGTGCGCTCAATCCTTCTTCGTGGCTTTGATCAAGAGATG
GCAGAGAAAGTGGGTTCCTACATGGAACAACATGGTGTTAAGTTCTTAAGAAAATTCGTG
CCTGTGATGATTCAGCAGTTGGAGAAAGGTTCCCCTGGAAAGCTGAGAGTAGTGGCTGAA
TCCACTGAAGGGCCAGGCGCTGTTGAAGGAGTATACAACACAGTTTTGTTAGCAATTGGT
CGTGACTCCTGTACAAGGAAAATAGGCTTGGAGAAGATTGGTGTCAAAATCAATGAGAAG
AGTGGCAAAATACCAGTCAACGATGTGGAGCAGACCAACGTGCCCTATGTTTATGCCATT
GGGGACATTCTGGAGGGTAAACTTGAGCTCACTCCTGTCGCCATACAGGCGGGCAAGCTG
CTGGCTCGAAGACTTTTTGGGGGCCGTTTAGAAAAGGCAAGTTTCTTATGTGATTATATT
AATGTGCCAACTACAGTGTTTACTCCTTTGGAATATGGCTGCTGTGGATTATCTGAAGAG
AAGGCTATTGAAGTGCATAAGAAAGAGAATCTGGAAGTGTATCATACTTTGTTCTGGCCT
CTTGAATGGACGGTAGCTGGCAGAGACAACAATACTTGTTACGCAAAGATAATTTGCAAT
AAATTCGACAATGAGCGAGTGGTAGGATTTCACATTCTTGGACCGAATGCTGGTGAGGTT
ACCCAAGGATTTGCAGCTGCAATGAAATGTGGGCTCACGAAACAGCTGCTCGATGACACC
ATTGGAATTCACCCCACGTGTGGTGAGGTGTTCACAACCTTGGAAATCACAAAGGCATCG
GGACTAGACATCACTCAGAAAGGCTGC
//
KK953348.1:subseq(107979,55903)	GeneWise	match	1000	12580	387.65	+	.	KK953348.1:subseq(107979,55903)-genewise-prediction-1
KK953348.1:subseq(107979,55903)	GeneWise	cds	1000	1113	0.00	+	0	KK953348.1:subseq(107979,55903)-genewise-prediction-1
KK953348.1:subseq(107979,55903)	GeneWise	intron	1114	3082	0.00	+	.	KK953348.1:subseq(107979,55903)-genewise-prediction-1
KK953348.1:subseq(107979,55903)	GeneWise	cds	3083	3187	0.00	+	0	KK953348.1:subseq(107979,55903)-genewise-prediction-1
KK953348.1:subseq(107979,55903)	GeneWise	intron	3188	3427	0.00	+	.	KK953348.1:subseq(107979,55903)-genewise-prediction-1
KK953348.1:subseq(107979,55903)	GeneWise	cds	3428	3500	0.00	+	0	KK953348.1:subseq(107979,55903)-genewise-prediction-1
KK953348.1:subseq(107979,55903)	GeneWise	intron	3501	5201	0.00	+	.	KK953348.1:subseq(107979,55903)-genewise-prediction-1
KK953348.1:subseq(107979,55903)	GeneWise	cds	5202	5321	0.00	+	2	KK953348.1:subseq(107979,55903)-genewise-prediction-1
KK953348.1:subseq(107979,55903)	GeneWise	intron	5322	10984	0.00	+	.	KK953348.1:subseq(107979,55903)-genewise-prediction-1
KK953348.1:subseq(107979,55903)	GeneWise	cds	10985	11127	0.00	+	2	KK953348.1:subseq(107979,55903)-genewise-prediction-1
KK953348.1:subseq(107979,55903)	GeneWise	intron	11128	12547	0.00	+	.	KK953348.1:subseq(107979,55903)-genewise-prediction-1
KK953348.1:subseq(107979,55903)	GeneWise	cds	12548	12580	0.00	+	0	KK953348.1:subseq(107979,55903)-genewise-prediction-1
KK953348.1:subseq(107979,55903)	GeneWise	match	12597	55122	694.49	+	.	KK953348.1:subseq(107979,55903)-genewise-prediction-2
KK953348.1:subseq(107979,55903)	GeneWise	cds	12597	12679	0.00	+	0	KK953348.1:subseq(107979,55903)-genewise-prediction-2
KK953348.1:subseq(107979,55903)	GeneWise	intron	12680	13526	0.00	+	.	KK953348.1:subseq(107979,55903)-genewise-prediction-2
KK953348.1:subseq(107979,55903)	GeneWise	cds	13527	13752	0.00	+	1	KK953348.1:subseq(107979,55903)-genewise-prediction-2
KK953348.1:subseq(107979,55903)	GeneWise	intron	13753	14940	0.00	+	.	KK953348.1:subseq(107979,55903)-genewise-prediction-2
KK953348.1:subseq(107979,55903)	GeneWise	cds	14941	15033	0.00	+	0	KK953348.1:subseq(107979,55903)-genewise-prediction-2
KK953348.1:subseq(107979,55903)	GeneWise	intron	15034	25881	0.00	+	.	KK953348.1:subseq(107979,55903)-genewise-prediction-2
KK953348.1:subseq(107979,55903)	GeneWise	cds	25882	25958	0.00	+	0	KK953348.1:subseq(107979,55903)-genewise-prediction-2
KK953348.1:subseq(107979,55903)	GeneWise	intron	25959	26515	0.00	+	.	KK953348.1:subseq(107979,55903)-genewise-prediction-2
KK953348.1:subseq(107979,55903)	GeneWise	cds	26516	26684	0.00	+	1	KK953348.1:subseq(107979,55903)-genewise-prediction-2
KK953348.1:subseq(107979,55903)	GeneWise	intron	26685	30771	0.00	+	.	KK953348.1:subseq(107979,55903)-genewise-prediction-2
KK953348.1:subseq(107979,55903)	GeneWise	cds	30772	30879	0.00	+	0	KK953348.1:subseq(107979,55903)-genewise-prediction-2
KK953348.1:subseq(107979,55903)	GeneWise	intron	30880	52012	0.00	+	.	KK953348.1:subseq(107979,55903)-genewise-prediction-2
KK953348.1:subseq(107979,55903)	GeneWise	cds	52013	52108	0.00	+	0	KK953348.1:subseq(107979,55903)-genewise-prediction-2
KK953348.1:subseq(107979,55903)	GeneWise	intron	52109	54714	0.00	+	.	KK953348.1:subseq(107979,55903)-genewise-prediction-2
KK953348.1:subseq(107979,55903)	GeneWise	cds	54715	54849	0.00	+	0	KK953348.1:subseq(107979,55903)-genewise-prediction-2
KK953348.1:subseq(107979,55903)	GeneWise	intron	54850	55062	0.00	+	.	KK953348.1:subseq(107979,55903)-genewise-prediction-2
KK953348.1:subseq(107979,55903)	GeneWise	cds	55063	55122	0.00	+	0	KK953348.1:subseq(107979,55903)-genewise-prediction-2
//

genewise output
Score 17.81 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000888_2.0  404 LELTPVAIQAGKLLARRLFG                              
                     ++LTP+A+Q  K+  R + G                              
                     IQLTPLALQMVKVRPREVKG                              
KK953348.1:sub-27402 accactgtcagagacaggag                              
                     tatcctctattatgcgatag                              
                     cacagatggggaggcaagaa                              


//
>KK953348.1:subseq(107979,55903).pep
IQLTPLALQMVKVRPREVKG
//
>KK953348.1:subseq(107979,55903).[27402:27341].sp
ATCCAACTCACACCGTTAGCTTTGCAGATGGTGAAAGTGAGGCCCAGAGAAGTGAAAGGA
//
KK953348.1:subseq(107979,55903)	GeneWise	match	27402	27343	17.81	-	.	KK953348.1:subseq(107979,55903)-genewise-prediction-1
KK953348.1:subseq(107979,55903)	GeneWise	cds	27402	27343	0.00	-	0	KK953348.1:subseq(107979,55903)-genewise-prediction-1
//
