
genewise output
Score 45.42 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000886_2.0   79 AQGQSSSAKRGRLAADVSSGLIFLKKKKK                     
                     AQGQSSSAKRG L  DVSSGLI LKK  K                     
                     AQGQSSSAKRGGLVVDVSSGLIVLKKINK                     
KK950772.1:subs51023 gcgctttgaaggtggggatgcagcaaaaa                     
                     cagaccccagggtttatgcgttttaataa                     
                     tgcgtcaaaaaaggattcagacccaaata                     


//
>KK950772.1:subseq(530244,79566).pep
AQGQSSSAKRGGLVVDVSSGLIVLKKINK
//
>KK950772.1:subseq(530244,79566).[51023:51109].sp
GCTCAGGGCCAGTCTTCCTCAGCAAAAAGAGGAGGATTGGTGGTAGATGTTAGCTCAGGG
CTAATCGTCCTCAAAAAAATAAATAAA
//
KK950772.1:subseq(530244,79566)	GeneWise	match	51023	51109	45.42	+	.	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	cds	51023	51109	0.00	+	0	KK950772.1:subseq(530244,79566)-genewise-prediction-1
//

genewise output
Score 1193.46 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000886_2.0    1 AKDHLRRQTLPENPATGVSGPSGSTSVATADPQARLQACIDSHPVVVYS 
                     AKDHLRRQTLPENPATGVSGPSGSTSVATADPQARLQACIDSHPVVVYS 
                     AKDHLRRQTLPENPATGVSGPSGSTSVATADPQARLQACIDSHPVVVYS 
KK950772.1:sub-78569 gagcccccatcgacgaggagctgtaaggaggccgcccgtagaccgggta 
                     caaatggactcaacccgtggccgccgtcccacacgtacgtagactttag 
                     tgttcttatgaacacttgtctaacccacgaccgcgggccaccctgccct 


SPP00000886_2.0   50 KSARQRCAE                       VKKIFKSIRVSYFLLEL 
                     KSARQRCAE                       VKKIFKSIRVSYFLLEL 
                     KSARQRCAE                       VKKIFKSIRVSYFLLEL 
KK950772.1:sub-78422 atgccctggGTAAGGC  Intron 1   CAGgaaatatacgttttcgc 
                     accgaggca<0-----[78395:73940]-0>taattactgtcatttat 
                     gcgcgcttg                       aggatgtctttttgtat 


SPP00000886_2.0   76 DQA                          QGQSSSAKRGRLAADVSSGL 
                     DQA                          QGQSSSAKRGRLAADVSSGL 
                     DQA          A:A[gct]        QGQSSSAKRGRLAADVSSGL 
KK950772.1:sub-73888 gcgGGTAAGAG  Intron 2   TAGCTcgctttgaagatggggatgc 
                     aac <1-----[73878:64123]-1>  agaccccagggtccatgcgt 
                     taa                          gcgtcaaaaaagaattcagt 


SPP00000886_2.0  100 IFLKKKKKKKSTVTHY                          LQKLLKM 
                     IFLKKKKK  STVTHY                          LQKLLKM 
                     IFLKKKKK--STVTHY           -:X[tga]       LQKLLKM 
KK950772.1:sub-64060 atcaaaaa  tagactTGACAGTTA  Intron 3   CAGAccaccaa 
                     tttaaaaa  cctcaa  <2-----[64016:31687]-2> taattat 
                     cccaaaaa  ttaatt                          tagagag 


SPP00000886_2.0  123 NGSEDLPESYDYDLIIIGGGSGGLAAAKARPLV                 
                     NGSEDLPESYDYDLIIIGGGSGGLAAAKARPLV                 
                     NGSEDLPESYDYDLIIIGGGSGGLAAAKARPLV                 
KK950772.1:sub-31664 agtggccgttgtgcaaagggtggcgggagaccg                 
                     agcaatcacaaaattttgggcggtcccacgctt                 
                     tctgttcgctctcccctagcaacggttgagctg                 


SPP00000886_2.0  156                           KYNKKVMVLDFVTPTPLGTRW   
                                               KYNKKVMVLDFVTPTPLGTRW   
                               S:S[tcc]        KYNKKVMVLDFVTPTPLGTRW   
KK950772.1:sub-31565 TGTTGTCT  Intron 4   CAGCCataaagagcgtgacaccgaat   
                      <1-----[31564:30112]-1>  aaaaattttattcccctgcgg   
                                               attggggcgttctacttatag   


SPP00000886_2.0  178                           LGGTCVNVGCIPKKLMHQAALLG 
                                               LGGTCVNVGCIPKKLMHQAALLG 
                               G:G[ggt]        LGGTCVNVGCIPKKLMHQAALLG 
KK950772.1:sub-30046 GGTAAGCT  Intron 5   CAGGTcggatgaggtacaacaccggttg 
                      <1-----[30045:28382]-1>  tggcgtatggtcaattaaccttg 
                                               tccgtgtgtcataaggcaatgaa 


SPP00000886_2.0  202 QALRDSRNYGWNVEEM                          KHDWEKM 
                     QALRDSRNYGWNVEEM                          KHDWEKM 
                     QALRDSRNYGWNVEEM          V:V[gtt]        KHDWEKM 
KK950772.1:sub-28310 cgccgtcatgtagggaGGTAAGGG  Intron 6   CAGTTacgtgaa 
                     actgacgaaggataat <1-----[28261:20782]-1>  aaagaat 
                     acaactaccagtcggg                          atcgaag 


SPP00000886_2.0  226 TEAVQNHIGSLNWGYRVALREKKVTYENAYGQFIGPHRIK          
                     TEAVQNHIGSLNWGYRVALREKKVTYENAYGQFIGPHRIK          
                     TEAVQNHIGSLNWGYRVALREKKVTYENAYGQFIGPHRIK          
KK950772.1:sub-20758 agggcacagtcatgtcggccgaagatgagtgctagccaaa          
                     cactaaatgctaggagtctgaaatcaaacagattgcagta          
                     aatagtctctgcgccgatggggacctgcacggtttctgtg          


SPP00000886_2.0  266                        TTNNKGKEKIYSAEKFLIATGERPRY 
                                            TTNNKGKEKIYSAEKFLIATGERPRY 
                                            TTNNKGKEKIYSAEKFLIATGERPRY 
KK950772.1:sub-20638 GTAATTG  Intron 7   TAGaaaaagagaattggatcagaggacct 
                     <0-----[20638:20211]-0>ccaaagaaataccaatttccgagcga 
                                            aatcacaaaataagatctcttagatt 


SPP00000886_2.0  292 LDIPGDKEYCIS                          DDLFSLPYCPG 
                     LDIPGDKEYCIS                          DDLFSLPYCPG 
                     LDIPGDKEYCIS           S:S[agt]       DDLFSLPYCPG 
KK950772.1:sub-20132 tgacggagttaaAGGTAAGGA  Intron 8   CAGTggctttcttcg 
                     tatcgaaaagtg  <2-----[20094:18446]-2> aattctcagcg 
                     atcttcaacccc                          tttccattcgt 


SPP00000886_2.0  316 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHM 
                     KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHM 
                     KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHM 
KK950772.1:sub-18411 aacggggttggtgtggtcggagtggagagctaccagtgcgagaaaggca 
                     actttgccatctagcgttcgtgtatctttgctttggtaaatcaatgaat 
                     gcggtacctatgattatttcttatcttgagctctaatcgcgccattatg 


SPP00000886_2.0  365 EEHGVKFIKQFVPIK                       VEQIEAGTPGQ 
                     EEHGVKFIKQFVPIK                       VEQIEAGTPG+ 
                     EEHGVKFIKQFVPIK                       VEQIEAGTPGR 
KK950772.1:sub-18264 ggcggataactgcaaGTAAGTG  Intron 9   TAGggcagggacgc 
                     aaagtattaattcta<0-----[18219:15189]-0>taatacgccgg 
                     aactcgtaagtaaaa                       tagtaagaaca 


SPP00000886_2.0  391 LRVVAQSTKGDETIEGEYNT                       VLLAIG 
                     LRVVAQSTKGDETIEGEYNT                       VLLAIG 
                     LRVVAQSTKGDETIEGEYNT                       VLLAIG 
KK950772.1:sub-15155 cagggctaagggaagggtaaGTAAGGA  Intron 10  CAGgtcgag 
                     tgttcaccagaactagaaac<0-----[15095:14489]-0>tttctg 
                     cagatgccatcaccaagtcg                       gggaaa 


SPP00000886_2.0  417 RDACTRKIGLETVGVKINE                          TGKI 
                     RDACTRKIGLETVGVKINE                          TGKI 
                     RDACTRKIGLETVGVKINE           K:K[aaa]       TGKI 
KK950772.1:sub-14470 aggtaaaagtgagggaaagAAGTAAGGA  Intron 11  CAGAagaa 
                     gacgcgatgtactgtataa  <2-----[14411:12954]-2> cgat 
                     atacaaatcaatggagata                          taaa 


SPP00000886_2.0  441 PVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVK  
                     PVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVK  
                     PVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVK  
KK950772.1:sub-12940 cgagggcaagctatgaggacggacgcacggacggatcgcactggtaga  
                     ctcaaaacatcatactgattagatatcctctacggttcagtaggccta  
                     tcgtaggccatcctctccaggggggccccccgaaaggtggtttcctcg  


SPP00000886_2.0  489                        CDYENVPTTVFTPLEYGACGLSEENA 
                                            CDYENVPTTVFTPLEYGACGLSEENA 
                                            CDYENVPTTVFTPLEYGACGLSEENA 
KK950772.1:sub-12796 GTGAGTG  Intron 12  CAGtgtgagcaagtaccgtggtgctggag 
                     <0-----[12796: 7210]-0>gaaaatcccttcctaagcggtcaaac 
                                            tctattaatatttgatttttttagtt 


SPP00000886_2.0  515 VEKFGEENIE                       VYHSYFWPLEWTIPSR 
                     VEKFGEENIE                       VYHSYFWPLEWTIPSR 
                     VEKFGEENIE                       VYHSYFWPLEWTIPSR 
KK950772.1:subs-7131 ggatgggaagGTAAGTT  Intron 13  TAGgtcatttctgtaacta 
                     taatgaaata<0-----[7101 : 4266]-0>taagatgctagctccg 
                     ggatgaattg                       tcttctgggaggtaaa 


SPP00000886_2.0  541 DNNKCYAKIICNIKDN                       ERVVGFHVLG 
                     DNNKCYAKIICNIKDN                       ERVVGFHVLG 
                     DNNKCYAKIICNIKDN                       ERVVGFHVLG 
KK950772.1:subs-4217 gaaattgaaataaagaGTAAGTG  Intron 14  TAGgcgggtcgcg 
                     aaaagacattgataaa<0-----[4169 : 1138]-0>agttgtattg 
                     tccattaaacttcacc                       attgcccagt 


SPP00000886_2.0  567 PNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEI              
                     PNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAE+              
                     PNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEV              
KK950772.1:subs-1107 caggggacgtgggcatgcaacccgaaagaccgtggg              
                     cacgatcagtccctaggtcaaatagctgtactgcat              
                     attaattgctgtgcgtagcagggccctccctctagg              


//
Making a A in phase 1 intron
Making a X in phase 2 intron
Making a S in phase 1 intron
Making a G in phase 1 intron
Making a V in phase 1 intron
Making a S in phase 2 intron
Making a K in phase 2 intron
>KK950772.1:subseq(530244,79566).pep
AKDHLRRQTLPENPATGVSGPSGSTSVATADPQARLQACIDSHPVVVYSKSARQRCAEVK
KIFKSIRVSYFLLELDQAAQGQSSSAKRGRLAADVSSGLIFLKKKKKSTVTHYXLQKLLK
MNGSEDLPESYDYDLIIIGGGSGGLAAAKARPLVSKYNKKVMVLDFVTPTPLGTRWGLGG
TCVNVGCIPKKLMHQAALLGQALRDSRNYGWNVEEMVKHDWEKMTEAVQNHIGSLNWGYR
VALREKKVTYENAYGQFIGPHRIKTTNNKGKEKIYSAEKFLIATGERPRYLDIPGDKEYC
ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIG
EHMEEHGVKFIKQFVPIKVEQIEAGTPGRLRVVAQSTKGDETIEGEYNTVLLAIGRDACT
RKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRL
YGGSTVKCDYENVPTTVFTPLEYGACGLSEENAVEKFGEENIEVYHSYFWPLEWTIPSRD
NNKCYAKIICNIKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAE
V
//
>KK950772.1:subseq(530244,79566).[78569:998].sp
GCTAAGGATCATCTCCGTCGTCAAACTTTGCCAGAAAACCCAGCCACTGGTGTGAGTGGC
CCTTCAGGATCCACCAGCGTAGCCACGGCAGACCCCCAGGCCCGGCTGCAGGCCTGCATA
GACAGCCACCCTGTGGTCGTCTACAGTAAGTCCGCGCGCCAGCGCTGTGCTGAGGTAAAG
AAGATATTTAAGTCTATCCGTGTTTCTTATTTTTTGCTTGAACTTGATCAAGCAGCTCAG
GGCCAGTCTTCCTCAGCAAAAAGAGGAAGATTGGCAGCAGATGTTAGCTCAGGGCTTATC
TTCCTCAAAAAAAAAAAAAAATCTACTGTAACACATTATTGACTTCAAAAGCTACTGAAA
ATGAATGGCTCTGAGGATCTTCCCGAGTCCTATGACTATGACCTCATCATCATTGGAGGG
GGCTCAGGAGGCCTGGCGGCTGCTAAGGCAAGGCCCCTTGTGTCCAAATATAATAAGAAG
GTGATGGTCCTGGATTTTGTCACTCCAACCCCTCTTGGAACTAGATGGGGTCTTGGCGGC
ACGTGTGTGAATGTGGGTTGCATACCTAAAAAACTGATGCACCAAGCAGCTTTGTTAGGA
CAAGCCCTACGAGACTCTCGAAACTACGGATGGAATGTCGAGGAGATGGTTAAACATGAC
TGGGAAAAAATGACAGAAGCTGTACAGAATCACATTGGCTCTCTGAACTGGGGCTACCGG
GTAGCTCTGCGGGAGAAGAAAGTCACCTATGAGAACGCATACGGGCAGTTTATTGGTCCC
CATAGGATTAAGACAACAAATAACAAAGGCAAAGAAAAAATATATTCAGCAGAGAAATTT
CTCATTGCCACTGGTGAAAGGCCACGTTATTTAGATATCCCTGGTGACAAAGAATACTGC
ATCAGCAGTGATGATCTTTTCTCCTTACCTTATTGCCCGGGTAAGACCCTGGTGGTTGGA
GCCTCCTATGTAGCTTTGGAATGTGCTGGATTTCTTGCTGGCATTGGTTTAGATGTCACT
GTTATGGTACGGTCCATTCTCCTTAGAGGATTTGACCAGGACATGGCCAACAAAATTGGT
GAACATATGGAAGAACACGGTGTCAAGTTTATAAAACAGTTTGTACCAATAAAAGTTGAA
CAGATTGAAGCAGGGACACCAGGCCGACTCAGAGTGGTAGCTCAGTCCACCAAAGGTGAC
GAAACCATCGAAGGAGAGTATAACACGGTGTTGCTGGCAATAGGAAGAGATGCATGCACA
AGAAAAATTGGCTTAGAAACTGTGGGGGTAAAGATAAATGAAAAAACTGGAAAAATACCT
GTCACGGATGAAGAGCAGACCAACGTACCTTACATCTATGCCATTGGCGACATACTGGAG
GGGAAGCTGGAGCTCACCCCCGTCGCCATCCAGGCAGGAAGATTGCTGGCTCAGAGGCTT
TATGGTGGCTCCACTGTCAAGTGTGACTATGAAAATGTTCCAACAACTGTATTTACTCCT
CTGGAATATGGTGCTTGTGGTCTTTCTGAAGAGAATGCTGTGGAGAAATTTGGGGAAGAA
AATATTGAGGTTTACCATAGTTACTTTTGGCCGTTGGAATGGACGATTCCATCAAGAGAT
AACAACAAATGTTATGCAAAAATAATCTGTAATATCAAAGACAACGAACGTGTTGTGGGC
TTCCACGTACTGGGTCCAAATGCTGGAGAAGTTACTCAGGGCTTTGCGGCTGCGCTCAAG
TGTGGACTGACCAAACAGCAGCTGGACAGCACCATTGGCATCCACCCTGTCTGTGCAGAG
GTG
//
KK950772.1:subseq(530244,79566)	GeneWise	match	78569	1000	1194.46	-	.	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	cds	78569	78396	0.00	-	0	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	intron	78395	73940	0.00	-	.	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	cds	73939	73879	0.00	-	0	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	intron	73878	64123	0.00	-	.	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	cds	64122	64017	0.00	-	2	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	intron	64016	31687	0.00	-	.	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	cds	31686	31565	0.00	-	1	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	intron	31564	30112	0.00	-	.	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	cds	30111	30046	0.00	-	2	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	intron	30045	28382	0.00	-	.	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	cds	28381	28262	0.00	-	2	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	intron	28261	20782	0.00	-	.	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	cds	20781	20639	0.00	-	2	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	intron	20638	20211	0.00	-	.	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	cds	20210	20095	0.00	-	0	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	intron	20094	18446	0.00	-	.	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	cds	18445	18220	0.00	-	1	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	intron	18219	15189	0.00	-	.	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	cds	15188	15096	0.00	-	0	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	intron	15095	14489	0.00	-	.	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	cds	14488	14412	0.00	-	0	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	intron	14411	12954	0.00	-	.	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	cds	12953	12797	0.00	-	1	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	intron	12796	7210	0.00	-	.	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	cds	7209	7102	0.00	-	0	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	intron	7101	4266	0.00	-	.	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	cds	4265	4170	0.00	-	0	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	intron	4169	1138	0.00	-	.	KK950772.1:subseq(530244,79566)-genewise-prediction-1
KK950772.1:subseq(530244,79566)	GeneWise	cds	1137	1000	0.00	-	0	KK950772.1:subseq(530244,79566)-genewise-prediction-1
//
