
genewise output
Score 29.39 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000885_2.0    3 PRSPAPSPSSLRPRSPAPSPPPSDPGVQ-------PPSPSSLRP      
                     P S AP+P SLR R+P    P S+  V        PP P  LRP      
                     PTSRAPAPPSLRARNPCSESPSSNGPVSLRQTLQTPPKPGRLRP      
KK951606.1:subs 1112 catagcgcctccgcacttgtcttagcgtcccaccaccacgcccc      
                     cccgcccccctgcgacgcaccccagctctgactacccacggtgc      
                     cccgcgaacccccactcaaattgtaatctaaatatcggtgcatt      


//
>KK951606.1:subseq(308544,4631).pep
PTSRAPAPPSLRARNPCSESPSSNGPVSLRQTLQTPPKPGRLRP
//
>KK951606.1:subseq(308544,4631).[1112:1243].sp
CCCACCTCCAGGGCCCCGGCACCACCCTCCCTCCGCGCCCGAAACCCTTGCTCAGAATCA
CCTTCTTCGAATGGACCAGTTTCCCTTCGACAAACACTTCAAACTCCCCCGAAGCCTGGG
CGCCTACGTCCT
//
KK951606.1:subseq(308544,4631)	GeneWise	match	1112	1243	35.38	+	.	KK951606.1:subseq(308544,4631)-genewise-prediction-1
KK951606.1:subseq(308544,4631)	GeneWise	cds	1112	1243	0.00	+	0	KK951606.1:subseq(308544,4631)-genewise-prediction-1
//

genewise output
Score 384.37 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000885_2.0  123 SPLPEALPWLARAQETTPNSLK----RSALPVDPPPEPAPGPTLSPDKD 
                     +P P   P L R    TP S       SALPVDPPPEPAPGPTLSPDKD 
                     TPTPVWPPTLVRIPTPTPTSSSVAAANSALPVDPPPEPAPGPTLSPDKD 
KK951606.1:subs-3769 acacgtccacgcacacacatttggggatgccggcccgcgcgcattcgag 
                     cccctgcccttgtccccccccctcccacctctacccacccgcctccaaa 
                     cgtgcgcgcgcgcacacacacgctcgcccatgtgcaattagctgactac 


SPP00000885_2.0  168 PAPTTPSVKHVPSVANGFGPTQEPLPAPPPSATDLLGPTPSADPSTTKW 
                     PAPTTPSVKHVPSVANGFGPTQEPLPAPPPSATDLLGPTPSADPSTTKW 
                     PAPTTPSVKHVPSVANGFGPTQEPLPAPPPSATDLLGPTPSADPSTTKW 
KK951606.1:subs-3622 cgcaacagacgctggagtgcacgcccgccctgagtcgcacaggctaaat 
                     ccccccgtaatcctcagtgccaactccccccccattgcccgcaccccag 
                     tgcaggtggtcaacctgcgccggctttctagcttgggccgcacacccgg 


SPP00000885_2.0  217 TDPNSGPIVPILGTLPTATPIPTNTFASTSENFQVDNKITIRVIY     
                     TDPNSGPIVPILGTLPTATPIPTNTFASTSENFQVDNKITIRVIY     
                     TDPNSGPIVPILGTLPTATPIPTNTFASTSENFQVDNKITIRVIY     
KK951606.1:subs-3475 agcatgcagcacgaccagacacaaatgtaagatcggaaaaacgat     
                     cacacgcttcttgctccccctccactcccgaatataaatctgtta     
                     atcttatcgccggccggcagttccccccctgccagccgcgtagcc     


SPP00000885_2.0  262                           GLXSYGLR                
                                                   YGLR                
                                C:C[tgc]       ----YGLR                
KK951606.1:subs-3340 TGGTGAGGG  Intron 1   AAGC    tgcc                
                       <2-----[3338 : 1564]-2>     agtg                
                                                   tctg                


SPP00000885_2.0  271                        YILLRKSLDQQFPNRLVF         
                                            YILLRKSLDQQFPNRLVF         
                                            YILLRKSLDQQFPNRLVF         
KK951606.1:subs-1550 GTGAGTA  Intron 2   CAGtaccaaacgcctcaccgt         
                     <0-----[1550 : 1405]-0>atttgagtaaatcagttt         
                                            ctggagtgcgacactact         


SPP00000885_2.0  289                        EEDVGAQASGEFEVFVEGKLVHSKK  
                                            EEDVGAQASGEFEVFVEGKLVHSKK  
                                            EEDVGAQASGEFEVFVEGKLVHSKK  
KK951606.1:subs-1350 GTGAGTT  Intron 3   CAGggggggcgtggtggtgggacgctaa  
                     <0-----[1350 : 1248]-0>aaatgcaccgatatttagattacaa  
                                            ggcaccgtgggtagtcagagctggg  


SPP00000885_2.0  314                        KGDGFVDEARLRKIVSAINEEIKRR  
                                            KGDGFVDEARLRKIVSAINEEIKRR  
                                            KGDGFVDEARLRKIVSAINEEIKRR  
KK951606.1:subs-1172 GTGATTC  Intron 4   CAGagggtggggaccaagagaaggaaaa  
                     <0-----[1172 : 1075]-0>agagttaacgtgattgctaaatagg  
                                            actctgtgcgggacgctctggcgag  


//
Making a C in phase 2 intron
>KK951606.1:subseq(308544,4631).pep
TPTPVWPPTLVRIPTPTPTSSSVAAANSALPVDPPPEPAPGPTLSPDKDPAPTTPSVKHV
PSVANGFGPTQEPLPAPPPSATDLLGPTPSADPSTTKWTDPNSGPIVPILGTLPTATPIP
TNTFASTSENFQVDNKITIRVIYCYGLRYILLRKSLDQQFPNRLVFEEDVGAQASGEFEV
FVEGKLVHSKKKGDGFVDEARLRKIVSAINEEIKRR
//
>KK951606.1:subseq(308544,4631).[3769:998].sp
ACCCCGACTCCGGTCTGGCCCCCGACCCTGGTCCGGATCCCAACCCCAACCCCAACCTCA
TCCTCGGTCGCTGCCGCGAACTCCGCCCTACCTGTGGATCCGCCCCCAGAACCTGCTCCA
GGGCCCACTTTGTCACCCGATAAAGACCCTGCGCCCACAACGCCGAGTGTGAAGCATGTC
CCATCAGTCGCCAATGGGTTCGGGCCCACCCAGGAGCCCCTTCCTGCTCCCCCTCCATCG
GCCACTGATTTGCTGGGGCCCACCCCGAGCGCAGACCCATCCACCACCAAGTGGACAGAT
CCCAATTCTGGACCTATCGTGCCCATCCTGGGGACCCTCCCGACGGCCACACCGATTCCT
ACCAACACCTTCGCCTCCACCAGTGAGAACTTCCAAGTGGACAACAAGATCACGATTCGA
GTGATCTACTGCTATGGCCTTCGGTACATTCTGCTGAGAAAGAGTCTGGACCAGCAATTC
CCAAACCGTCTAGTCTTTGAGGAGGACGTAGGCGCCCAGGCTTCGGGGGAGTTTGAAGTG
TTTGTCGAAGGGAAACTGGTCCATTCGAAGAAGAAAGGCGATGGCTTTGTGGATGAGGCC
AGGCTGCGGAAAATCGTGAGCGCTATCAATGAGGAGATCAAGAGAAGG
//
KK951606.1:subseq(308544,4631)	GeneWise	match	3769	1000	390.36	-	.	KK951606.1:subseq(308544,4631)-genewise-prediction-1
KK951606.1:subseq(308544,4631)	GeneWise	cds	3769	3339	0.00	-	0	KK951606.1:subseq(308544,4631)-genewise-prediction-1
KK951606.1:subseq(308544,4631)	GeneWise	intron	3338	1564	0.00	-	.	KK951606.1:subseq(308544,4631)-genewise-prediction-1
KK951606.1:subseq(308544,4631)	GeneWise	cds	1563	1551	0.00	-	1	KK951606.1:subseq(308544,4631)-genewise-prediction-1
KK951606.1:subseq(308544,4631)	GeneWise	intron	1550	1405	0.00	-	.	KK951606.1:subseq(308544,4631)-genewise-prediction-1
KK951606.1:subseq(308544,4631)	GeneWise	cds	1404	1351	0.00	-	0	KK951606.1:subseq(308544,4631)-genewise-prediction-1
KK951606.1:subseq(308544,4631)	GeneWise	intron	1350	1248	0.00	-	.	KK951606.1:subseq(308544,4631)-genewise-prediction-1
KK951606.1:subseq(308544,4631)	GeneWise	cds	1247	1173	0.00	-	0	KK951606.1:subseq(308544,4631)-genewise-prediction-1
KK951606.1:subseq(308544,4631)	GeneWise	intron	1172	1075	0.00	-	.	KK951606.1:subseq(308544,4631)-genewise-prediction-1
KK951606.1:subseq(308544,4631)	GeneWise	cds	1074	1000	0.00	-	0	KK951606.1:subseq(308544,4631)-genewise-prediction-1
//
