
genewise output
Score 317.15 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000881_2.0    8 GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIY                 
                     GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIY                 
                     GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIY                 
KK949882.1:subs 1021 gtacgtggtacgaacctcgacagggatccccat                 
                     gaggttaaatgttgagacatgtagaaatcacta                 
                     gcgggtggcggttcggcgccctaagtcctgcat                 


SPP00000881_2.0   41                           HIASFLSVFKLVLIGLIIVGKDP 
                                               HIASFLSVFKLVLIGLIIVGKDP 
                                R:R[aga]       HIASFLSVFKLVLIGLIIVGKDP 
KK949882.1:subs 1120 AGGTAAGTA  Intron 1   TAGAcagttctgtacgtagtaaggagc 
                       <2-----[1122 : 1904]-2> atccttcttattttgttttgaac 
                                               caatcgaccaagaacaattcgct 


SPP00000881_2.0   65 FAFFGMQAPSIWQWGQENK                       VYACMMV 
                     FAFFGMQAPSIWQWGQENK                       VYACMMV 
                     FAFFGMQAPSIWQWGQENK                       VYACMMV 
KK949882.1:subs 1975 tgttgacgcaatctgcgaaGTATGTA  Intron 2   TAGgtgtaag 
                     tcttgtaccgtgaggaaaa<0-----[2032 : 3852]-0>tacgttt 
                     ttctcgattccgggcgatg                       ctgcggg 


SPP00000881_2.0   91 FFLSNMVENQCMSTGAFEITFN                          V 
                     FFLSNMVENQCMSTGAFEITFN                          V 
                     FFLSNMVENQCMSTGAFEITFN          D:D[gat]        V 
KK949882.1:subs 3874 ttcaaaggactataggtgaataGGTGGGTT  Intron 3   TAGATg 
                     tttgattaaagtccgctatcta <1-----[3941 : 5907]-1>  t 
                     ccgccgtgcgcggacatgaccc                          a 


SPP00000881_2.0  115 PVWSKLESGHLPSMQQLVQILDNEMKLNVHMDPIPHHGS           
                     PVWSKLESGHLPSMQQLVQILDNEMKLNVHMDPIPHHGS           
                     PVWSKLESGHLPSMQQLVQILDNEMKLNVHMDPIPHHGS           
KK949882.1:subs 5913 cgttacgtgccctacccgcacgagaacagcagcacccgt           
                     ctgcatacgatcctaattattaaatatatatactcaagc           
                     aggtggattctacgagttatgctagggtgtgtacattaa           


//
Making a R in phase 2 intron
Making a D in phase 1 intron
>KK949882.1:subseq(562457,7029).pep
GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAF
FGMQAPSIWQWGQENKVYACMMVFFLSNMVENQCMSTGAFEITFNDVPVWSKLESGHLPS
MQQLVQILDNEMKLNVHMDPIPHHGS
//
>KK949882.1:subseq(562457,7029).[1021:6029].sp
GGGTACAGGCGGGTGTTTGAGGAGTACATGCGGGTTATTAGCCAGCGGTACCCGGACATC
CGCATTGAAGGAGAGAATTACCTCCCTCAGCCCATATATAGACACATAGCATCTTTCCTG
TCAGTCTTCAAACTAGTGTTAATAGGCTTAATAATTGTTGGCAAGGACCCTTTTGCTTTC
TTTGGCATGCAAGCTCCTAGCATCTGGCAGTGGGGCCAGGAAAATAAGGTCTATGCGTGC
ATGATGGTGTTCTTCCTGAGCAACATGGTTGAGAACCAGTGCATGTCGACAGGCGCATTT
GAGATAACCTTCAACGATGTACCAGTGTGGTCTAAGCTGGAATCTGGTCACCTTCCATCC
ATGCAACAGCTTGTTCAAATTCTGGACAATGAAATGAAGCTGAATGTGCATATGGATCCA
ATCCCACATCATGGATCA
//
KK949882.1:subseq(562457,7029)	GeneWise	match	1021	6029	317.15	+	.	KK949882.1:subseq(562457,7029)-genewise-prediction-1
KK949882.1:subseq(562457,7029)	GeneWise	cds	1021	1121	0.00	+	0	KK949882.1:subseq(562457,7029)-genewise-prediction-1
KK949882.1:subseq(562457,7029)	GeneWise	intron	1122	1904	0.00	+	.	KK949882.1:subseq(562457,7029)-genewise-prediction-1
KK949882.1:subseq(562457,7029)	GeneWise	cds	1905	2031	0.00	+	1	KK949882.1:subseq(562457,7029)-genewise-prediction-1
KK949882.1:subseq(562457,7029)	GeneWise	intron	2032	3852	0.00	+	.	KK949882.1:subseq(562457,7029)-genewise-prediction-1
KK949882.1:subseq(562457,7029)	GeneWise	cds	3853	3940	0.00	+	0	KK949882.1:subseq(562457,7029)-genewise-prediction-1
KK949882.1:subseq(562457,7029)	GeneWise	intron	3941	5907	0.00	+	.	KK949882.1:subseq(562457,7029)-genewise-prediction-1
KK949882.1:subseq(562457,7029)	GeneWise	cds	5908	6029	0.00	+	2	KK949882.1:subseq(562457,7029)-genewise-prediction-1
//

genewise output
Score 15.62 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000881_2.0   76 WQWGQENKVY                                        
                     W WG   K+Y                                        
                     WAWGVPIKLY                                        
KK949882.1:subs-5400 tgtggcaact                                        
                     gcggtctata                                        
                     gagttaagtt                                        


//
>KK949882.1:subseq(562457,7029).pep
WAWGVPIKLY
//
>KK949882.1:subseq(562457,7029).[5400:5369].sp
TGGGCATGGGGTGTTCCAATAAAGCTTTAT
//
KK949882.1:subseq(562457,7029)	GeneWise	match	5400	5371	15.62	-	.	KK949882.1:subseq(562457,7029)-genewise-prediction-1
KK949882.1:subseq(562457,7029)	GeneWise	cds	5400	5371	0.00	-	0	KK949882.1:subseq(562457,7029)-genewise-prediction-1
//
