
genewise output
Score 319.80 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000878_2.0   17 RCLSNDTGSPTKPELSLAKSEWQKKLTPEQFYVTREKGTEP         
                     +CLSNDTGSPTKPELSLAKSEWQKKLTPEQFYVTREKGTEP         
                     KCLSNDTGSPTKPELSLAKSEWQKKLTPEQFYVTREKGTEP         
KK949983.1:subs 1000 atctagagtcaacgctcgaagtcaatacgcttgaagagagc         
                     agtcaacgcccacatctcagagaaatccaatatcgaagcac         
                     atatttagttaggggtccgtggagggtggactcgaaactag         


SPP00000878_2.0   58                        PFSGIYLNNEESGMYHCVCCDSPLF  
                                            PFSGIYLNNEESGMYHCVCCDSPLF  
                                            PFSGIYLNNEESGMYHCVCCDSPLF  
KK949983.1:subs 1123 GTAGGCT  Intron 1   CAGctagatcaaggtgatctgttgacct  
                     <0-----[1123 : 6557]-0>ctggtataaaacgtaagtggagctt  
                                            cctgccgtcggaagtctgctccacc  


SPP00000878_2.0   83                           SEKKYSSGTGWPSFSEAHGTSGS 
                                               SEKKYSSGTGWPSFSEAHGTSGS 
                                S:S[agt]       SEKKYSSGTGWPSFSEAHGTSGS 
KK949983.1:subs 6633 AGGTAAGAT  Intron 2   CAGTtgaatttgagtctttggcgatgt 
                       <2-----[6635 :12191]-2> caaaaccgcggcctcacagccgc 
                                               tgagcctctcgtgtagtcgatct 


SPP00000878_2.0  107 DESKTGILRRVDHSSGSVRTEVVCKQ                        
                     DESKTGILRRVDHSSGSVRTEVVCKQ                        
                     DESKTGILRRVDHSSGSVRTEVVCKQ                        
KK949983.1:subs12262 ggaaagacacggcttgtgcagggtacGTGAATT  Intron 3   CAG 
                     aagacgttggtaaccgctgcattgaa<0-----[12340:13245]-0> 
                     tatgtgcgatgccgaattcggtccgg                        


SPP00000878_2.0  133 CEAHLGHVFPDGPGPTGQRFCINSVALKFKPS                  
                     CEAHLGHVFPDGPGPTGQRFCINSVALKFKPS                  
                     CEAHLGHVFPDGPGPTGQRFCINSVALKFKPS                  
KK949983.1:subs13246 tggccgcgtcggcgcagcattaaaggcataca                  
                     gacatgattcagcgccgagtgtagtctatacg                  
                     tgtttctgttcatgtttggtccctgaggcaat                  


//
Making a S in phase 2 intron
>KK949983.1:subseq(1182846,14341).pep
KCLSNDTGSPTKPELSLAKSEWQKKLTPEQFYVTREKGTEPPFSGIYLNNEESGMYHCVC
CDSPLFSSEKKYSSGTGWPSFSEAHGTSGSDESKTGILRRVDHSSGSVRTEVVCKQCEAH
LGHVFPDGPGPTGQRFCINSVALKFKPS
//
>KK949983.1:subseq(1182846,14341).[1000:13341].sp
AAATGTCTATCTAATGATACAGGGTCTCCTACAAAGCCGGAGCTGTCTCTCGCCAAGAGT
GAGTGGCAAAAGAAGTTGACTCCGGAGCAATTCTATGTCACGAGAGAAAAAGGCACTGAA
CCGCCCTTCAGTGGGATCTACCTGAATAACGAGGAGTCAGGAATGTATCACTGTGTGTGC
TGTGACAGCCCACTCTTCAGTTCTGAGAAAAAGTACTCCTCTGGCACTGGCTGGCCTTCG
TTTTCAGAGGCTCACGGGACATCTGGCTCTGATGAAAGTAAGACTGGGATCCTGAGACGT
GTGGACCACTCGTCAGGATCTGTTCGCACGGAGGTTGTCTGCAAGCAGTGTGAGGCTCAT
CTTGGCCATGTGTTTCCTGACGGACCTGGGCCTACTGGTCAGAGGTTTTGCATCAACAGT
GTGGCACTGAAGTTCAAACCAAGT
//
KK949983.1:subseq(1182846,14341)	GeneWise	match	1000	13341	319.80	+	.	KK949983.1:subseq(1182846,14341)-genewise-prediction-1
KK949983.1:subseq(1182846,14341)	GeneWise	cds	1000	1122	0.00	+	0	KK949983.1:subseq(1182846,14341)-genewise-prediction-1
KK949983.1:subseq(1182846,14341)	GeneWise	intron	1123	6557	0.00	+	.	KK949983.1:subseq(1182846,14341)-genewise-prediction-1
KK949983.1:subseq(1182846,14341)	GeneWise	cds	6558	6634	0.00	+	0	KK949983.1:subseq(1182846,14341)-genewise-prediction-1
KK949983.1:subseq(1182846,14341)	GeneWise	intron	6635	12191	0.00	+	.	KK949983.1:subseq(1182846,14341)-genewise-prediction-1
KK949983.1:subseq(1182846,14341)	GeneWise	cds	12192	12339	0.00	+	1	KK949983.1:subseq(1182846,14341)-genewise-prediction-1
KK949983.1:subseq(1182846,14341)	GeneWise	intron	12340	13245	0.00	+	.	KK949983.1:subseq(1182846,14341)-genewise-prediction-1
KK949983.1:subseq(1182846,14341)	GeneWise	cds	13246	13341	0.00	+	0	KK949983.1:subseq(1182846,14341)-genewise-prediction-1
//

genewise output
Score 16.48 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000878_2.0  142 PDGPGPTG                                          
                     P GPGP+G                                          
                     PVGPGPSG                                          
KK949983.1:sub-13295 cggcgctg                                          
                     ctgcgccg                                          
                     aacatgaa                                          


//
>KK949983.1:subseq(1182846,14341).pep
PVGPGPSG
//
>KK949983.1:subseq(1182846,14341).[13295:13270].sp
CCAGTAGGCCCAGGTCCGTCAGGA
//
KK949983.1:subseq(1182846,14341)	GeneWise	match	13295	13272	16.48	-	.	KK949983.1:subseq(1182846,14341)-genewise-prediction-1
KK949983.1:subseq(1182846,14341)	GeneWise	cds	13295	13272	0.00	-	0	KK949983.1:subseq(1182846,14341)-genewise-prediction-1
//
