
genewise output
Score 16.72 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000877_2.0   42 PWPAFTETIHADS-VAKRPEHNR                           
                     P P+F   I A     KRP H R                           
                     PLPSFPARISAQGWTPKRPRHGR                           
KK954428.1:subs 3999 cccttcgaaagcgtacaacccga                           
                     ctcctccgtgcaggccagcgagg                           
                     cccttaaactcgcgttaacctaa                           


//
>KK954428.1:subseq(45889,4240).pep
PLPSFPARISAQGWTPKRPRHGR
//
>KK954428.1:subseq(45889,4240).[3999:4067].sp
CCCCTCCCCTCTTTTCCAGCAAGAATCAGTGCCCAGGGCTGGACTCCTAAAAGACCCCGC
CATGGAAGA
//
KK954428.1:subseq(45889,4240)	GeneWise	match	3999	4067	16.72	+	.	KK954428.1:subseq(45889,4240)-genewise-prediction-1
KK954428.1:subseq(45889,4240)	GeneWise	cds	3999	4067	0.00	+	0	KK954428.1:subseq(45889,4240)-genewise-prediction-1
//

genewise output
Score 222.17 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000877_2.0    1 MSFCSFFGGEIFQNHFEP                          IYVCA 
                     MSFCSFFGGEIFQNHFEP                          IYVCA 
                     MSFCSFFGGEIFQNHFEP          G:G[ggc]        IYVCA 
KK954428.1:subs-3240 atttattgggatcactgcGGTACGAC  Intron 1   CAGGCatgtg 
                     tctggttggattaaatac <1-----[3185 : 1588]-1>  tatgc 
                     ggcccccgcgtcgcccgg                          ctgcc 


SPP00000877_2.0   25 KCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRPEALK      
                     KCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRPEALK      
                     KCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRPEALK      
KK954428.1:subs-1570 atgtgcttactatgcttctcgtagaacggaggaccgcaccggta      
                     aggaattcggcaacacccgcctcactacagtcagcaaagcacta      
                     gtttgccctcagtacccaggcctgccttccgcgtagctgcacag      


SPP00000877_2.0   69                        VSCGKCGNGLGHEFLNDGPKRGQSRF 
                                            VSCGKCGNGLGHEFLNDGPKRGQSRF 
                                            VSCGKCGNGLGHEFLNDGPKRGQSRF 
KK954428.1:subs-1438 GTGAGTG  Intron 2   CAGgttgatgagcgcgtcaggcacgctct 
                     <0-----[1438 : 1120]-0>tcggaggagtgaattaagcaggacgt 
                                            gctcgtccggctgtgttccggggccc 


SPP00000877_2.0   95 XIFSSSLKFVPKGE                                    
                     XIFSSSLKFVPKGE                                    
                     XIFSSSLKFVPKGE                                    
KK954428.1:subs-1041 tataatcatgcagg                                    
                     gttggctattcaga                                    
                     aacccgggcctatg                                    


//
Making a G in phase 1 intron
>KK954428.1:subseq(45889,4240).pep
MSFCSFFGGEIFQNHFEPGIYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPE
HNRPEALKVSCGKCGNGLGHEFLNDGPKRGQSRFXIFSSSLKFVPKGE
//
>KK954428.1:subseq(45889,4240).[3240:998].sp
ATGTCGTTCTGCAGCTTCTTCGGGGGCGAGATTTTCCAGAACCACTTCGAGCCGGGCATC
TATGTGTGCGCCAAGTGTGGTTATGAGCTCTTCTCCAGTCGCTCAAAGTATGCACACTCC
TCCCCATGGCCGGCCTTCACTGAGACCATCCATGCTGACAGCGTGGCCAAGCGTCCAGAG
CACAATCGGCCCGAAGCCTTAAAGGTGTCCTGTGGCAAGTGTGGCAACGGGCTGGGCCAT
GAGTTTCTGAATGATGGCCCCAAGCGGGGGCAGTCCCGCTTCTGAATATTCAGCAGCTCG
CTGAAGTTCGTCCCTAAAGGTGAG
//
KK954428.1:subseq(45889,4240)	GeneWise	match	3240	1000	222.17	-	.	KK954428.1:subseq(45889,4240)-genewise-prediction-1
KK954428.1:subseq(45889,4240)	GeneWise	cds	3240	3186	0.00	-	0	KK954428.1:subseq(45889,4240)-genewise-prediction-1
KK954428.1:subseq(45889,4240)	GeneWise	intron	3185	1588	0.00	-	.	KK954428.1:subseq(45889,4240)-genewise-prediction-1
KK954428.1:subseq(45889,4240)	GeneWise	cds	1587	1439	0.00	-	2	KK954428.1:subseq(45889,4240)-genewise-prediction-1
KK954428.1:subseq(45889,4240)	GeneWise	intron	1438	1120	0.00	-	.	KK954428.1:subseq(45889,4240)-genewise-prediction-1
KK954428.1:subseq(45889,4240)	GeneWise	cds	1119	1000	0.00	-	0	KK954428.1:subseq(45889,4240)-genewise-prediction-1
//
