
genewise output
Score 27.50 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000876_2.0    2 WRSL---GLALALCLLPWGGTESQGQ                        
                     WR L    L LALC  PW  TESQG+                        
                     WRLLTKGALPLALCSSPWKETESQGK                        
KK950737.1:subs 6825 tatcaaggtccgctttctagagacga                        
                     ggttcagctctctgcccgaacagaga                        
                     gggtaaatgcgtctccagggagcgcg                        


//
>KK950737.1:subseq(574487,7920).pep
WRLLTKGALPLALCSSPWKETESQGK
//
>KK950737.1:subseq(574487,7920).[6825:6902].sp
TGGAGGTTGCTTACAAAAGGAGCTTTGCCCCTGGCTCTCTGTTCCTCCCCATGGAAGGAG
ACAGAGAGCCAGGGCAAG
//
KK950737.1:subseq(574487,7920)	GeneWise	match	6825	6902	29.50	+	.	KK950737.1:subseq(574487,7920)-genewise-prediction-1
KK950737.1:subseq(574487,7920)	GeneWise	cds	6825	6902	0.00	+	0	KK950737.1:subseq(574487,7920)-genewise-prediction-1
//

genewise output
Score 673.48 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000876_2.0    1 MWRSLGLALALCLLPWGGTESQGQSSFCKQPPAWSIRDQDPMLNSYGSV 
                     MWRSLGLALALCLLPWGGTESQGQSSFCKQPPAWSIRDQDPMLNSYGSV 
                     MWRSLGLALALCLLPWGGTESQGQSSFCKQPPAWSIRDQDPMLNSYGSV 
KK950737.1:subs-6920 ataacgcgcgctccctggagacgcatttacccgtaaagcgcacattgtg 
                     tgggtgtctctgttcgggcagagagctgaacccggtgaaacttacagct 
                     ggacggtcgtctctagaaagcggaccttgatacgcagtataggccttag 


SPP00000876_2.0   50 TVVALLQASXYLCLLQAS                          LEDLR 
                     TVVALLQASXYLCLLQAS                          LEDLR 
                     TVVALLQASXYLCLLQAS           R:R[aga]       LEDLR 
KK950737.1:subs-6773 agggcccgattctcccgtAGGTAAGAC  Intron 1   TAGAtggcc 
                     cttcttacggatgttacc  <2-----[6717 : 5839]-2> taatg 
                     tgttgtaccacgctggat                          gacga 


SPP00000876_2.0   74 VKLEKEGYSNISYVVVNHQEISARLKYIHLKNKVSEYIAVYQQEENQTD 
                     VKLEKEGYSNISYVVVNHQEISARLKYIHLKNKVSEYIAVYQQEENQTD 
                     VKLEKEGYSNISYVVVNHQEISARLKYIHLKNKVSEYIAVYQQEENQTD 
KK950737.1:subs-5822 gacgaggttaattgggaccgatgctataccaaagtgtaggtccggacag 
                     tataaagacatcatttaaaatccgtaatataaatcaatctaaaaaaaca 
                     aaggaaacactctttttcaacttaaacattatgtaatttttaaaacaac 


SPP00000876_2.0  123 IWTLLNGSKDDFLIYD                          CGRLVYH 
                     IWTLLNGSKDDFLIYD                          CGRLVYH 
                     IWTLLNGSKDDFLIYD           R:R[aga]       CGRLVYH 
KK950737.1:subs-5675 atactagaaggtcatgAGGTGTGTA  Intron 2   TAGAtgccgtc 
                     tgcttaggaaatttaa  <2-----[5625 : 4358]-2> gggttaa 
                     cgtcatacatcccatc                          ttttatt 


SPP00000876_2.0  147 LGLPYSFLTFPYVEEAIKIAYCEKKCGNCSLM                  
                     LGLPYSFLTFPYVEEAIKIAYCEKKCGNCSLM                  
                     LGLPYSFLTFPYVEEAIKIAYCEKKCGNCSLM                  
KK950737.1:subs-4335 cgtctttcatctggggaaagttgaatgattca                  
                     tgtcacttctcataactatcagaaaggagctt                  
                     ttgtcccattataaactgtcctaggtacctcg                  


SPP00000876_2.0  179                        TLEDEDFCKTLSLATVEKTTEDSQPH 
                                            TLEDEDFCKTLSLATVEKTTEDSQPH 
                                            TLEDEDFCKTLSLATVEKTTEDSQPH 
KK950737.1:subs-4239 GTATTTT  Intron 3   CAGacggggttaacttgaggaaaggtccc 
                     <0-----[4239 : 1618]-0>ctaaaatgactctcctaaccaacaca 
                                            agatacctatatgttgaaatgtagat 


SPP00000876_2.0  205 HHHHHQHHHKHGHQHVGNSQLSENQQPEATGAPEHPPPPGLHHHHKHKG 
                     HHHHHQHHHKHGHQHVGNSQLSENQQPEATGAPEHPPP GLHHHHKHKG 
                     HHHHHQHHHKHGHQHVGNSQLSENQQPEATGAPEHPPP-GLHHHHKHKG 
KK950737.1:subs-1539 cccccccccacgcccggaacctgacccggaggcgcccc gcccccacag 
                     aaaaaaaaaaagaaatgagatcaaaacaccgccaaccc gtaaaaaaag 
                     ctctcgttcgtgtgttgctgtagtgagaaatttgttta cttcctgcgc 


SPP00000876_2.0  254 QQRRGHPENXDMPGGESLQLSLPQKKLXQKGCINQLLCKMPKDSKLAPS 
                     QQRRGHPENXDMPGGESLQLSLPQKKLXQKGCINQLLCKMPKDSKLAPS 
                     QQRRGHPENXDMPGGESLQLSLPQKKLXQKGCINQLLCKMPKDSKLAPS 
KK950737.1:subs-1395 ccaagccgatgacgggatcctcccaactcagtaactctaacagtatgca 
                     aagggacaagatcggagtatctcaaatgaaggtaattgatcaacatccg 
                     aaagtcagcacgaagataatttaaggcaaaatatgactggcataggttt 


SPP00000876_2.0  303 SXCXHCRHLIFENTRSAITXQCTENLPSLCSXQGLWAEENVIESCQXRL 
                     S   HCRHLIFENTRSAITXQCTENLPSLCSXQGLWAEENVIESCQXRL 
                     S!A!HCRHLIFENTRSAITXQCTENLPSLCSXQGLWAEENVIESCQXRL 
KK950737.1:subs-1248 a4g2ctcccatgaaatgaatctagacctttatcgctgggagagttctct 
                     g c aggatttaacgcctcgagcaatcctgggagtgcaaattacgaggt 
                     t t ttatgatatagtaccagtaaccctatcagatgaggcctattgatg 


SPP00000876_2.0  352 PPAAXQPSQQLKPTEASTN                               
                     PPAAXQPSQQLKPTEASTN                               
                     PPAAXQPSQQLKPTEASTN                               
KK950737.1:subs-1101 ccggtccacccacaggaaa                               
                     ccccgacgaataccacgca                               
                     tatcagatggcgcaaccct                               


//
Making a R in phase 2 intron
Making a R in phase 2 intron
>KK950737.1:subseq(574487,7920).pep
MWRSLGLALALCLLPWGGTESQGQSSFCKQPPAWSIRDQDPMLNSYGSVTVVALLQASXY
LCLLQASRLEDLRVKLEKEGYSNISYVVVNHQEISARLKYIHLKNKVSEYIAVYQQEENQ
TDIWTLLNGSKDDFLIYDRCGRLVYHLGLPYSFLTFPYVEEAIKIAYCEKKCGNCSLMTL
EDEDFCKTLSLATVEKTTEDSQPHHHHHHQHHHKHGHQHVGNSQLSENQQPEATGAPEHP
PPGLHHHHKHKGQQRRGHPENXDMPGGESLQLSLPQKKLXQKGCINQLLCKMPKDSKLAP
SSXAXHCRHLIFENTRSAITXQCTENLPSLCSXQGLWAEENVIESCQXRLPPAAXQPSQQ
LKPTEASTN
//
>KK950737.1:subseq(574487,7920).[6920:1244].sp
ATGTGGAGAAGCCTGGGGCTTGCCCTGGCTCTCTGTCTCCTTCCATGGGGAGGAACAGAG
AGCCAGGGGCAAAGCTCCTTTTGTAAGCAACCTCCAGCCTGGAGCATAAGGGATCAAGAT
CCAATGCTGAACTCCTATGGTTCAGTGACTGTGGTTGCTCTGCTTCAAGCCAGCTGATAC
CTGTGCCTTCTGCAGGCATCTAGATTGGAAGACCTGCGAGTAAAACTGGAGAAAGAAGGA
TACTCAAACATTTCCTATGTTGTTGTTAATCACCAAGAAATCTCTGCTCGATTAAAATAC
ATACATCTTAAAAATAAGGTTTCAGAATATATTGCTGTTTATCAACAAGAAGAAAACCAA
ACAGACATCTGGACTCTCTTAAATGGAAGCAAAGATGACTTCCTCATATATGACAGATGT
GGTCGTCTTGTATATCATCTTGGTTTGCCTTACTCCTTCCTAACTTTTCCATATGTAGAA
GAAGCCATTAAGATTGCCTACTGTGAAAAGAAGTGTGGAAACTGCTCTCTCATGACACTG
GAAGATGAAGACTTCTGTAAAACTCTATCTTTGGCTACTGTGGAAAAAACAACTGAGGAT
TCACAGCCACATCACCATCACCATCACCAGCATCATCACAAGCATGGGCATCAGCATGTT
GGGAACAGTCAGCTTTCAGAGAATCAGCAACCGGAAGCAACAGGTGCTCCTGAGCATCCT
CCTCCAGGCCTTCATCACCACCATAAGCACAAGGGCCAACAAAGAAGGGGTCACCCAGAG
AACTGAGACATGCCAGGAGGGGAAAGTTTACAACTTTCTCTTCCACAAAAGAAGCTCTGA
CAAAAAGGATGTATAAATCAGTTACTCTGTAAGATGCCCAAAGATTCAAAGTTGGCTCCT
AGTAGT
>KK950737.1:subseq(574487,7920).[1241:1237].sp
GCT
>KK950737.1:subseq(574487,7920).[1236:1043].sp
CATTGTCGACATCTGATATTTGAAAATACAAGGTCTGCAATCACCTGACAGTGTACAGAA
AACCTCCCCTCTTTATGTAGCTGACAGGGACTTTGGGCAGAGGAGAACGTCATTGAATCT
TGTCAGTGACGTTTGCCTCCAGCTGCCTGACAGCCAAGTCAGCAGCTCAAGCCCACAGAA
GCCAGCACCAAT
//
KK950737.1:subseq(574487,7920)	GeneWise	match	6920	1246	623.60	-	.	KK950737.1:subseq(574487,7920)-genewise-prediction-1
KK950737.1:subseq(574487,7920)	GeneWise	cds	6920	6718	0.00	-	0	KK950737.1:subseq(574487,7920)-genewise-prediction-1
KK950737.1:subseq(574487,7920)	GeneWise	intron	6717	5839	0.00	-	.	KK950737.1:subseq(574487,7920)-genewise-prediction-1
KK950737.1:subseq(574487,7920)	GeneWise	cds	5838	5626	0.00	-	1	KK950737.1:subseq(574487,7920)-genewise-prediction-1
KK950737.1:subseq(574487,7920)	GeneWise	intron	5625	4358	0.00	-	.	KK950737.1:subseq(574487,7920)-genewise-prediction-1
KK950737.1:subseq(574487,7920)	GeneWise	cds	4357	4240	0.00	-	1	KK950737.1:subseq(574487,7920)-genewise-prediction-1
KK950737.1:subseq(574487,7920)	GeneWise	intron	4239	1618	0.00	-	.	KK950737.1:subseq(574487,7920)-genewise-prediction-1
KK950737.1:subseq(574487,7920)	GeneWise	cds	1617	1246	0.00	-	0	KK950737.1:subseq(574487,7920)-genewise-prediction-1
KK950737.1:subseq(574487,7920)	GeneWise	match	1241	1239	-17.05	-	.	KK950737.1:subseq(574487,7920)-genewise-prediction-2
KK950737.1:subseq(574487,7920)	GeneWise	cds	1241	1239	0.00	-	0	KK950737.1:subseq(574487,7920)-genewise-prediction-2
KK950737.1:subseq(574487,7920)	GeneWise	match	1236	1045	66.94	-	.	KK950737.1:subseq(574487,7920)-genewise-prediction-3
KK950737.1:subseq(574487,7920)	GeneWise	cds	1236	1045	0.00	-	0	KK950737.1:subseq(574487,7920)-genewise-prediction-3
//
