
genewise output
Score 431.44 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000874_2.0    1 FGIWADQLGDGRAHLIGIYMN                          KG 
                     FGIWADQLGDGRAHLIGIYMN                          KG 
                     FGIWADQLGDGRAHLIGIYMN           R:R[aga]       KG 
KK952002.1:subs 1000 tgatggccgggagccagataaAGGTACCAC  Intron 1   AAGAag 
                     tgtgcaatgaggcattgtata  <2-----[1065 : 1144]-2> ag 
                     tgagatgtgtaactttatcgc                          at 


SPP00000874_2.0   25 EKWELQLKGSGKTPYS                          HGDGRAV 
                     EKWELQLKGSGKTPYS                          HGDGRA+ 
                     EKWELQLKGSGKTPYS           R:R[cgt]       HGDGRAM 
KK952002.1:subs 1152 gatgcctagtgaacttCGGTACAGT  Intron 2   CAGTcgggcga 
                     aagatatagcgaccac  <2-----[1202 : 1292]-2> agaggct 
                     agggcaaacaagcatt                          ctccacg 


SPP00000874_2.0   49 LRSSVREFLGSEAVHHLGIPTSRAA                         
                     LRSSVREFLGSEAVHHLGIPTSRAA                         
                     LRSSVREFLGSEAVHHLGIPTSRAA           R:R[aga]      
KK952002.1:subs 1315 ccttgagttgagggcccgacaaaggAGGTAATTC  Intron 3      
                     tgcctgattggactaatgtccggcc  <2-----[1392 : 1839]   
                     tccagaatgttgtgcttataccatg                         


SPP00000874_2.0   74     HLGSEQKVFMDGLQ                          AVVLR 
                         HLGSEQKVFMDGLQ                          AVVLR 
                         HLGSEQKVFMDGLQ          A:A[gct]        AVVLR 
KK952002.1:subs 1837 CAGAccgagcagtaggccGGTGTTAC  Intron 4   CAGCTgggcc 
                     -2> atggaaatttagta <1-----[1884 : 4246]-1>  ctttg 
                         tgataaagtgccaa                          aaggc 


SPP00000874_2.0   95 VAKSWFRIGSLEILAHYGELDLL                           
                     VAKSWFRIGSLEILAHYGELDLL                           
                     VAKSWFRIGSLEILAHYGELDLL           R:R[cgg]        
KK952002.1:subs 4264 ggatttaagttgatgctggcgtcCGGTTAGAA  Intron 5   CAGG 
                     tcacgtgtgctattcaagatatt  <2-----[4335 : 6664]-2>  
                     ggatgtataaaatgttttagtaa                           


SPP00000874_2.0  119 TLLDFIIQEHFPSVDVGEPNRYV                       DFF 
                     TLLDFIIQEHFPSVDVGEPNRYV                       DFF 
                     TLLDFIIQEHFPSVDVGEPNRYV                       DFF 
KK952002.1:subs 6666 attgtaacgctctgggggcaatgGTAAGTT  Intron 6   TAGgtt 
                     cttatttaaatcctatgacagat<0-----[6735 : 7497]-0>att 
                     aaactcagatctagtcaatcatg                       ttt 


SPP00000874_2.0  145 SVVVSETAQLIALWTSVGFAH                          VC 
                     SVVVSETAQLIALWTSVGFAH                          VC 
                     SVVVSETAQLIALWTSVGFAH          G:G[ggt]        VC 
KK952002.1:subs 7507 tgggtgagccagttatggtgcGGTAAGTT  Intron 7   TAGGTgt 
                     ctttcaccattctgcctgtca <1-----[7571 : 9023]-1>  tg 
                     ttgatgagattcggagttttt                          tt 


SPP00000874_2.0  169 NTDNFSLLSITIDYGPFGFMEAYNP                         
                     NTDNFSLLSITIDYGPFGFMEAYNP                         
                     NTDNFSLLSITIDYGPFGFMEAYNP          D:D[gat]       
KK952002.1:subs 9032 aagatatttaaagtgctgtaggtacGGTATGTA  Intron 8       
                     acaatgttctctaagctgttacaac <1-----[9108 : 9856]    
                     tttcctgactatcttatttggctta                         


SPP00000874_2.0  194      FVPNTSDDERRYKIGNQANIGMFNLNKLLQALNPLL         
                          FVPNTSDDERRYKIGNQANIGMFNLNKLLQALNPLL         
                          FVPNTSDDERRYKIGNQANIGMFNLNKLLQALNPLL         
KK952002.1:subs 9854 CAGATtgcaatgggaataagacgaagatataattcgcactc         
                     -1>  ttcaccaaaggaatgaacatgttataattactactt         
                          taacatttaaataaatgcttggttacggaatacgag         


//
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a A in phase 1 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a D in phase 1 intron
>KK952002.1:subseq(290532,10927).pep
FGIWADQLGDGRAHLIGIYMNRKGEKWELQLKGSGKTPYSRHGDGRAMLRSSVREFLGSE
AVHHLGIPTSRAARHLGSEQKVFMDGLQAAVVLRVAKSWFRIGSLEILAHYGELDLLRTL
LDFIIQEHFPSVDVGEPNRYVDFFSVVVSETAQLIALWTSVGFAHGVCNTDNFSLLSITI
DYGPFGFMEAYNPDFVPNTSDDERRYKIGNQANIGMFNLNKLLQALNPLL
//
>KK952002.1:subseq(290532,10927).[1000:9966].sp
TTTGGGATATGGGCAGATCAGCTTGGGGATGGAAGAGCCCATCTTATTGGAATTTACATG
AACAGAAAAGGTGAAAAGTGGGAGCTCCAATTAAAAGGCTCAGGAAAGACCCCATATTCT
CGTCACGGTGACGGCCGAGCCATGCTTCGCTCCTCAGTGAGAGAATTTTTGGGTAGTGAG
GCTGTGCACCATCTTGGAATTCCAACCAGCAGAGCTGCGAGACATCTGGGAAGTGAACAA
AAAGTGTTTATGGACGGCCTACAAGCTGCAGTAGTGCTGCGCGTGGCGAAATCTTGGTTT
AGAATTGGATCATTAGAAATTTTGGCTCATTATGGTGAACTGGATTTACTACGGACATTA
TTAGACTTTATCATACAGGAACATTTCCCTTCAGTGGATGTCGGAGAACCTAACAGATAT
GTGGATTTTTTTTCTGTTGTGGTATCTGAGACAGCGCAACTTATTGCCTTGTGGACATCG
GTTGGTTTTGCTCATGGTGTTTGTAATACTGATAACTTCAGTTTGTTATCCATTACAATT
GACTATGGTCCATTTGGTTTTATGGAGGCCTATAATCCAGATTTTGTACCAAACACATCT
GATGATGAAAGAAGATATAAAATAGGAAATCAGGCCAATATTGGGATGTTTAATTTAAAC
AAGTTGTTACAAGCTCTAAACCCGTTACTG
//
KK952002.1:subseq(290532,10927)	GeneWise	match	1000	9966	431.44	+	.	KK952002.1:subseq(290532,10927)-genewise-prediction-1
KK952002.1:subseq(290532,10927)	GeneWise	cds	1000	1064	0.00	+	0	KK952002.1:subseq(290532,10927)-genewise-prediction-1
KK952002.1:subseq(290532,10927)	GeneWise	intron	1065	1144	0.00	+	.	KK952002.1:subseq(290532,10927)-genewise-prediction-1
KK952002.1:subseq(290532,10927)	GeneWise	cds	1145	1201	0.00	+	1	KK952002.1:subseq(290532,10927)-genewise-prediction-1
KK952002.1:subseq(290532,10927)	GeneWise	intron	1202	1292	0.00	+	.	KK952002.1:subseq(290532,10927)-genewise-prediction-1
KK952002.1:subseq(290532,10927)	GeneWise	cds	1293	1391	0.00	+	1	KK952002.1:subseq(290532,10927)-genewise-prediction-1
KK952002.1:subseq(290532,10927)	GeneWise	intron	1392	1839	0.00	+	.	KK952002.1:subseq(290532,10927)-genewise-prediction-1
KK952002.1:subseq(290532,10927)	GeneWise	cds	1840	1883	0.00	+	1	KK952002.1:subseq(290532,10927)-genewise-prediction-1
KK952002.1:subseq(290532,10927)	GeneWise	intron	1884	4246	0.00	+	.	KK952002.1:subseq(290532,10927)-genewise-prediction-1
KK952002.1:subseq(290532,10927)	GeneWise	cds	4247	4334	0.00	+	2	KK952002.1:subseq(290532,10927)-genewise-prediction-1
KK952002.1:subseq(290532,10927)	GeneWise	intron	4335	6664	0.00	+	.	KK952002.1:subseq(290532,10927)-genewise-prediction-1
KK952002.1:subseq(290532,10927)	GeneWise	cds	6665	6734	0.00	+	1	KK952002.1:subseq(290532,10927)-genewise-prediction-1
KK952002.1:subseq(290532,10927)	GeneWise	intron	6735	7497	0.00	+	.	KK952002.1:subseq(290532,10927)-genewise-prediction-1
KK952002.1:subseq(290532,10927)	GeneWise	cds	7498	7570	0.00	+	0	KK952002.1:subseq(290532,10927)-genewise-prediction-1
KK952002.1:subseq(290532,10927)	GeneWise	intron	7571	9023	0.00	+	.	KK952002.1:subseq(290532,10927)-genewise-prediction-1
KK952002.1:subseq(290532,10927)	GeneWise	cds	9024	9107	0.00	+	2	KK952002.1:subseq(290532,10927)-genewise-prediction-1
KK952002.1:subseq(290532,10927)	GeneWise	intron	9108	9856	0.00	+	.	KK952002.1:subseq(290532,10927)-genewise-prediction-1
KK952002.1:subseq(290532,10927)	GeneWise	cds	9857	9966	0.00	+	2	KK952002.1:subseq(290532,10927)-genewise-prediction-1
//

genewise output
Score 16.54 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000874_2.0   38 PYSRHGDGRAVLR                                     
                     P  RHG  +AVLR                                     
                     PGCRHGTTQAVLR                                     
KK952002.1:subs -491 cgtacgaacggta                                     
                     cgggagccacttg                                     
                     tgcatcctgcggg                                     


//
>KK952002.1:subseq(290532,10927).pep
PGCRHGTTQAVLR
//
>KK952002.1:subseq(290532,10927).[491:451].sp
CCTGGGTGCAGACATGGCACCACTCAGGCCGTGTTGAGG
//
KK952002.1:subseq(290532,10927)	GeneWise	match	491	453	16.54	-	.	KK952002.1:subseq(290532,10927)-genewise-prediction-1
KK952002.1:subseq(290532,10927)	GeneWise	cds	491	453	0.00	-	0	KK952002.1:subseq(290532,10927)-genewise-prediction-1
//
