
genewise output
Score 1053.04 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000873_2.0   75 RQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVVRDAFYD 
                     RQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVVRDAFYD 
                     RQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVVRDAFYD 
KK951712.1:subs 1000 acgggcagcctaacgtctaggatccgacaaagggtgatctaggcggttg 
                     gacaggattgcgtgattggacttatgtcccgcgcgtccaccttgactaa 
                     agtttcacgggccagcgccgcgccggcccggcgcccgcgcgcgacactt 


SPP00000873_2.0  124 GNPKYEKCTVVLRIASTFL                          FGSF 
                     GNPKYEKCTVVLRIASTFL                          FGSF 
                     GNPKYEKCTVVLRIASTFL           R:R[agg]       FGSF 
KK951712.1:subs 1147 gacatgataggtcagtatcAGGTAATGC  Intron 1   CAGGtgtt 
                     gacaaaagctttgtccctt  <2-----[1206 : 2644]-2> tgct 
                     ttaatagcatggtatcttc                          ccct 


SPP00000873_2.0  148 EIFKSTDEHTGRAGPSVGRNDIRVQMLDYVIGSFYPEIQAAHASDSVQR 
                     EIFKSTDEHTGRAGPSVGRNDIRVQMLDYVIGSFYPEIQAAHASDSVQR 
                     EIFKSTDEHTGRAGPSVGRNDIRVQMLDYVIGSFYPEIQAAHASDSVQR 
KK951712.1:subs 2658 gatataggcagcggcaggaagacgcacgtgagattcgacggcgagagca 
                     attaccaaacggcgcgtggaatgtattaattggtacataccacgagtag 
                     gttgcatgcgccgcctggacccggggtccgccttccacgttcctctagg 


SPP00000873_2.0  197 NAAFFRE                       VTRRTARMVAEWQCVGFCH 
                     NAAFFRE                       VTRRTARMVAEWQCVGFCH 
                     NAAFFRE                       VTRRTARMVAEWQCVGFCH 
KK951712.1:subs 2805 aggttcgGTAGGTG  Intron 2   CAGgaccagcagggtctggttc 
                     accttga<0-----[2826 : 4571]-0>tcggccgttcagagtgtga 
                     tttccgg                       ggtcgcgggtgggtcccct 


SPP00000873_2.0  223 GVLNTDNMSIVGLTIDYGPFGFLD                          
                     GVLNTDNMSIVGLTIDYGPFGFLD                          
                     GVLNTDNMSIVGLTIDYGPFGFLD           R:R[agg]       
KK951712.1:subs 4629 ggcaagaaaaggcaagtgctgtcgAGGTGNNNN  Intron 3       
                     gttacaatgttgtctaagctgtta  <2-----[4703 : 5314]    
                     cgccaccgccggcccccgccccgc                          


SPP00000873_2.0  247     YDPDHVCNASDNAGRYTYSKQPEVCKWNLQKLAEALEPELPRELG 
                         YDPDHVCNASDNAGRYTYSKQPEVCKWNLQKLAEALEPELPRELG 
                         YDPDHVCNASDNAGRYTYSKQPEVCKWNLQKLAEALEPELPRELG 
KK951712.1:subs 5312 CAGGtgcgcgtagtgaggctataaccggtataccacgggcgcgcccgcg 
                     -2> aacaatgaccaacggacagaacatgagataatcactacatcgatg 
                         ctcccgctctccggccgccagcggcagcggggcgcggcggcaggt 


SPP00000873_2.0  293 EAILAEEFDAEFHRHYLQKMRRKLGLVQAEQEEDAVLVAKLLETMHLT  
                     EAILAEEFDAEFHRHYLQKMRRKLGLVQAEQEEDAVLVAKLLETMHLT  
                     EAILAEEFDAEFHRHYLQKMRRKLGLVQAEQEEDAVLVAKLLETMHLT  
KK951712.1:subs 5451 ggacgggtgggtcactccaacaacgcgcggcgggggcggaccgaacca  
                     acttcaatacatagaataatggatgttacaaaaactttcattactatc  
                     gccgcagtccgccgctggggcgggcgggcggggtagggcggggcgcgc  


SPP00000873_2.0  341                           ADFTNTFYLLSSFPAGPESLGLT 
                                               ADFTNTFYLLSSFPAGPESLGLT 
                               G:G[ggt]        ADFTNTFYLLSSFPAGPESLGLT 
KK951712.1:subs 5595 GGTGAGCA  Intron 4   CAGGTggtaaatttcattcggcgtcgca 
                      <1-----[5596 : 9669]-1>  catcactattgctccgcactgtc 
                                               tcccccccggcccatgagtgcgc 


SPP00000873_2.0  365 EFLAALTTQCASLEELRLAFRPQMDP                        
                     EFLAALTTQCASLEELRLAFRPQMDP                        
                     EFLAALTTQCASLEELRLAFRPQMDP           R:R[cgg]     
KK951712.1:subs 9741 gtcggcaactgtcggcacgtcccagcCGGTGGGTA  Intron 5     
                     attcctccagcctaatgtctgcatac  <2-----[9821 :10774]  
                     gcgtggcagtccggagacccacggtc                        


SPP00000873_2.0  391     QLSMMLMLAQSNPQLFALIGTRANVTKELERVEQQSRLEQLSPAE 
                         QLSMMLMLAQSNPQLFALIGTRANVTKELERVEQQSRLEQLSPAE 
                         QLSMMLMLAQSNPQLFALIGTRANVTKELERVEQQSRLEQLSPAE 
KK951712.1:subs10772 CAGGcctaatacgctaccctgcagacgagaagcgcggcctccgccacgg 
                     -2> atctttttcacacattcttgcgcatcaatagtaaacgtaatgcca 
                         gcggggggaggcggccgcttcgaccaggggccgggggggggcgcg 


SPP00000873_2.0  437 LLSRNRGHWADWLQAY                          ARLEQDK 
                     LLSRNRGHWADWLQAY                          ARLEQDK 
                     LLSRNRGHWADWLQAY           R:R[aga]       ARLEQDK 
KK951712.1:subs10911 ccaaaagctggtccgtAGGTGAGGC  Intron 6   CAGAgccgcga 
                     ttggaggagcagtaca  <2-----[10961:11127]-2> cgtaaaa 
                     ggcgcgccgccgcgac                          cggggcg 


SPP00000873_2.0  461 EGAGDPEAWQAERVRVMHANNPKYVLRNYIAQTAIEAAESGDFSE     
                     EGAGDPEAWQAERVRVMHANNPKYVLRNYIAQTAIEAAESGDFSE     
                     EGAGDPEAWQAERVRVMHANNPKYVLRNYIAQTAIEAAESGDFSE     
KK951712.1:subs11150 gggggcggtcggcgcgacgaacatgccatagcagaggggaggttg     
                     agcgacacgacagtgttacaacaattgaatcacctaccaggatca     
                     gtcgcggcggtgtgtcgtccccgccggcccagtccgtcgtgccag     


SPP00000873_2.0  506                        VRRVLKLLEAPYHRAEEAAEVSEAAE 
                                            VRRVLKLLEAPYHRAEEAAEVSEAAE 
                                            VRRVLKLLEAPYHRAEEAAEVSEAAE 
KK951712.1:subs11285 GCAAGCG  Intron 7   CAGgccgcaccggctcagggggggtgggg 
                     <0-----[11285:11382]-0>tggttattaccaagcaaccatcacca 
                                            gggggggggctccgaggttgcaggag 


SPP00000873_2.0  532 PEGAGGASGRRRSYSSKPPLWAAELCVT                      
                     PEGAGGASGRRRSYSSKPPLWAAELCVT                      
                     PEGAGGASGRRRSYSSKPPLWAAELCVT                      
KK951712.1:subs11461 cggggggtgaccttaaaccctgggctga                      
                     cagcggccggggcaggacctgccatgtc                      
                     tggttggtcggcccccgcgcggaagtgg                      


//
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
>KK951712.1:subseq(207374,12553).pep
RQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVVRDAFYDGNPKYEKCTVV
LRIASTFLRFGSFEIFKSTDEHTGRAGPSVGRNDIRVQMLDYVIGSFYPEIQAAHASDSV
QRNAAFFREVTRRTARMVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDRYDPDHVC
NASDNAGRYTYSKQPEVCKWNLQKLAEALEPELPRELGEAILAEEFDAEFHRHYLQKMRR
KLGLVQAEQEEDAVLVAKLLETMHLTGADFTNTFYLLSSFPAGPESLGLTEFLAALTTQC
ASLEELRLAFRPQMDPRQLSMMLMLAQSNPQLFALIGTRANVTKELERVEQQSRLEQLSP
AELLSRNRGHWADWLQAYRARLEQDKEGAGDPEAWQAERVRVMHANNPKYVLRNYIAQTA
IEAAESGDFSEVRRVLKLLEAPYHRAEEAAEVSEAAEPEGAGGASGRRRSYSSKPPLWAA
ELCVT
//
>KK951712.1:subseq(207374,12553).[1000:11544].sp
AGACAGGCTGATGGTCGCAAAGTCCTGCGGTCGAGCATCCGAGAGTTCCTGTGCAGCGAG
GCCATGTTCCACCTGGGGATCCCCACCACGAGGGCCGGGGCCTGCGTCACGTCCCAGTCC
ACGGTCGTGCGAGACGCATTCTATGATGGTAATCCAAAATATGAAAAGTGCACAGTTGTG
TTGCGTATAGCTTCCACTTTTCTCAGGTTCGGCTCCTTTGAGATTTTTAAGTCCACAGAT
GAGCACACGGGCCGCGCGGGCCCCAGTGTGGGGAGAAACGACATCCGGGTGCAGATGCTT
GACTACGTGATCGGCAGTTTTTACCCCGAAATCCAGGCTGCTCACGCCAGTGACAGTGTA
CAGAGGAATGCTGCTTTCTTCCGGGAGGTGACGCGTCGCACGGCCCGGATGGTGGCTGAG
TGGCAGTGTGTCGGCTTCTGCCATGGCGTGCTCAACACAGACAACATGAGCATCGTGGGG
CTCACCATCGACTACGGGCCCTTCGGCTTCCTGGACAGGTACGATCCCGACCACGTGTGC
AATGCCTCTGACAACGCGGGGCGCTACACGTACAGCAAACAGCCCGAGGTGTGCAAATGG
AACCTGCAGAAGCTGGCCGAGGCCCTGGAGCCCGAGCTGCCCCGAGAGCTGGGTGAGGCC
ATCCTGGCCGAAGAGTTTGACGCCGAGTTCCACAGGCACTATCTGCAGAAGATGCGCAGG
AAGCTGGGCCTGGTGCAGGCCGAGCAGGAGGAGGATGCAGTGCTGGTGGCCAAGCTGCTG
GAGACCATGCACCTGACCGGTGCTGACTTCACCAACACCTTCTACTTGCTGAGCTCCTTC
CCAGCTGGGCCAGAGTCTCTGGGCCTGACCGAGTTCCTGGCTGCGCTGACCACACAGTGT
GCCTCCCTGGAGGAACTGAGACTCGCCTTCCGACCCCAGATGGATCCCCGGCAGCTCTCG
ATGATGTTGATGCTGGCACAGTCGAACCCGCAGCTCTTCGCGCTCATTGGTACCCGGGCA
AACGTCACAAAGGAGCTGGAGCGCGTCGAGCAGCAGTCGCGGCTGGAGCAGCTGAGCCCG
GCCGAGCTGCTGAGCAGGAACAGGGGCCACTGGGCCGACTGGCTCCAGGCATACAGAGCC
CGGCTGGAGCAGGACAAGGAGGGTGCCGGGGACCCGGAGGCCTGGCAGGCTGAGCGTGTG
CGTGTCATGCATGCCAACAACCCCAAGTACGTCCTGCGGAACTACATCGCACAGACTGCC
ATCGAGGCTGCCGAGAGTGGGGACTTCTCAGAGGTGCGGCGGGTGCTGAAGCTGCTGGAG
GCCCCTTACCACAGGGCAGAGGAGGCTGCTGAGGTCTCAGAGGCGGCAGAGCCTGAGGGG
GCTGGTGGGGCGTCTGGCAGGCGGCGCTCCTACAGCAGCAAGCCCCCGCTCTGGGCGGCA
GAACTGTGTGTGACG
//
KK951712.1:subseq(207374,12553)	GeneWise	match	1000	11544	1053.04	+	.	KK951712.1:subseq(207374,12553)-genewise-prediction-1
KK951712.1:subseq(207374,12553)	GeneWise	cds	1000	1205	0.00	+	0	KK951712.1:subseq(207374,12553)-genewise-prediction-1
KK951712.1:subseq(207374,12553)	GeneWise	intron	1206	2644	0.00	+	.	KK951712.1:subseq(207374,12553)-genewise-prediction-1
KK951712.1:subseq(207374,12553)	GeneWise	cds	2645	2825	0.00	+	1	KK951712.1:subseq(207374,12553)-genewise-prediction-1
KK951712.1:subseq(207374,12553)	GeneWise	intron	2826	4571	0.00	+	.	KK951712.1:subseq(207374,12553)-genewise-prediction-1
KK951712.1:subseq(207374,12553)	GeneWise	cds	4572	4702	0.00	+	0	KK951712.1:subseq(207374,12553)-genewise-prediction-1
KK951712.1:subseq(207374,12553)	GeneWise	intron	4703	5314	0.00	+	.	KK951712.1:subseq(207374,12553)-genewise-prediction-1
KK951712.1:subseq(207374,12553)	GeneWise	cds	5315	5595	0.00	+	1	KK951712.1:subseq(207374,12553)-genewise-prediction-1
KK951712.1:subseq(207374,12553)	GeneWise	intron	5596	9669	0.00	+	.	KK951712.1:subseq(207374,12553)-genewise-prediction-1
KK951712.1:subseq(207374,12553)	GeneWise	cds	9670	9820	0.00	+	2	KK951712.1:subseq(207374,12553)-genewise-prediction-1
KK951712.1:subseq(207374,12553)	GeneWise	intron	9821	10774	0.00	+	.	KK951712.1:subseq(207374,12553)-genewise-prediction-1
KK951712.1:subseq(207374,12553)	GeneWise	cds	10775	10960	0.00	+	1	KK951712.1:subseq(207374,12553)-genewise-prediction-1
KK951712.1:subseq(207374,12553)	GeneWise	intron	10961	11127	0.00	+	.	KK951712.1:subseq(207374,12553)-genewise-prediction-1
KK951712.1:subseq(207374,12553)	GeneWise	cds	11128	11284	0.00	+	1	KK951712.1:subseq(207374,12553)-genewise-prediction-1
KK951712.1:subseq(207374,12553)	GeneWise	intron	11285	11382	0.00	+	.	KK951712.1:subseq(207374,12553)-genewise-prediction-1
KK951712.1:subseq(207374,12553)	GeneWise	cds	11383	11544	0.00	+	0	KK951712.1:subseq(207374,12553)-genewise-prediction-1
//

genewise output
Score 19.71 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000873_2.0   10 PALFFSGNALLPGAEPAAHCYCGHQFGQF                     
                     PA + + + L PG     H  C H+ G F                     
                     PAYIPNQHQLPPGGSHCCHSSCAHRAGSF                     
KK951712.1:sub-10472 cgtacaccccccggacttctttgcaggtt                     
                     ccatcaaaatccgggaggaccgcagcgct                     
                     tcccacgcattaaatcctccctctgtgcc                     


//
>KK951712.1:subseq(207374,12553).pep
PAYIPNQHQLPPGGSHCCHSSCAHRAGSF
//
>KK951712.1:subseq(207374,12553).[10472:10384].sp
CCTGCCTACATCCCAAACCAGCACCAACTTCCTCCAGGAGGAAGTCACTGCTGTCACTCC
TCCTGTGCCCATAGGGCTGGGTCCTTC
//
KK951712.1:subseq(207374,12553)	GeneWise	match	10472	10386	19.71	-	.	KK951712.1:subseq(207374,12553)-genewise-prediction-1
KK951712.1:subseq(207374,12553)	GeneWise	cds	10472	10386	0.00	-	0	KK951712.1:subseq(207374,12553)-genewise-prediction-1
//
