
genewise output
Score 12.87 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000869_2.0    4 RGRKRKA                                           
                     RGRKR A                                           
                     RGRKRGA                                           
KK951476.1:subs 1738 cgaacgg                                           
                     gggaggc                                           
                     ccagtct                                           


//
>KK951476.1:subseq(167188,2587).pep
RGRKRGA
//
>KK951476.1:subseq(167188,2587).[1738:1758].sp
CGCGGCAGAAAGCGTGGCGCT
//
KK951476.1:subseq(167188,2587)	GeneWise	match	1738	1758	12.87	+	.	KK951476.1:subseq(167188,2587)-genewise-prediction-1
KK951476.1:subseq(167188,2587)	GeneWise	cds	1738	1758	0.00	+	0	KK951476.1:subseq(167188,2587)-genewise-prediction-1
//

genewise output
Score 229.03 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000869_2.0    1 MASRGRKRKAEAVVAVAEKREKLTSGGKGVEEVTVVIEH           
                     MASRGRKRKAEA VAVAEKREKLTSGGKGVEEVTVVIEH           
                     MASRGRKRKAEAAVAVAEKREKLTSGGKGVEEVTVVIEH           
KK951476.1:subs-1587 agtcgaacagggggggggacgacaaggagggggaggagc           
                     tccgggagacacctctcaagaatcgggagtaatctttaa           
                     gtccgggggcgggcagcggagggccccgagggggctcgt           


SPP00000869_2.0   40                           TSXRVYGRNAAALSQALRLEAPE 
                                               TSXRVYGRNAAALSQALRLEAPE 
                                C:C[tgc]       TSXRVYGRNAAALSQALRLEAPE 
KK951476.1:subs-1470 TGGTAAGGG  Intron 1   TAGCaatcgtgcagggcacgcccggcg 
                       <2-----[1468 : 1382]-2> cgggtaggaccctgactgtacca 
                                               gcacccgcccgcgcgggcggccg 


SPP00000869_2.0   64 LPVKVNPAKPRRGSFEVTLLRPDGS                         
                     LPVKVNPAKPRRGSFEVTLLRPDGS                         
                     LPVKVNPAKPRRGSFEVTLLRPDGS          S:S[agt]       
KK951476.1:subs-1311 ccgagacgacaagatggaccccggaAGTGAGTA  Intron 2       
                     tctataccacggggtatcttgcagg <1-----[1235 : 1098]    
                     tagggctcgcagcccgggggcgccc                         


SPP00000869_2.0   89      AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS             
                          AELWTGIKKGPPRKLKFP+PQEVVEELKKYLS             
                          AELWTGIKKGPPRKLKFPDPQEVVEELKKYLS             
KK951476.1:subs-1100 CAGGTggctagaaagcccacatcgccgggggcaatct             
                     -1>  catgcgtaagccgatatcacaattaataaatc             
                          ggcgtgtgggcgcacgctctagggaggggctg             


//
Making a C in phase 2 intron
Making a S in phase 1 intron
>KK951476.1:subseq(167188,2587).pep
MASRGRKRKAEAAVAVAEKREKLTSGGKGVEEVTVVIEHCTSXRVYGRNAAALSQALRLE
APELPVKVNPAKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFPDPQEVVEELKKYL
S
//
>KK951476.1:subseq(167188,2587).[1587:998].sp
ATGGCTTCCCGCGGGAGGAAGCGGAAGGCCGAGGCGGCGGTCGCAGTGGCCGAGAAGCGA
GAGAAGCTGACCAGCGGCGGCAAGGGAGTGGAGGAGGTGACGGTCGTTATCGAGCATTGC
ACGAGCTGACGCGTCTACGGGCGCAACGCCGCGGCCCTGAGCCAGGCGCTGCGCCTGGAG
GCCCCCGAGCTTCCAGTGAAGGTGAACCCTGCCAAGCCCAGAAGGGGCAGCTTCGAGGTG
ACGCTGCTGCGCCCGGACGGCAGCAGTGCGGAGCTCTGGACTGGGATTAAGAAGGGGCCC
CCGCGCAAACTCAAGTTCCCTGACCCTCAAGAGGTGGTGGAAGAGCTGAAGAAGTACCTT
TCG
//
KK951476.1:subseq(167188,2587)	GeneWise	match	1587	1000	229.03	-	.	KK951476.1:subseq(167188,2587)-genewise-prediction-1
KK951476.1:subseq(167188,2587)	GeneWise	cds	1587	1469	0.00	-	0	KK951476.1:subseq(167188,2587)-genewise-prediction-1
KK951476.1:subseq(167188,2587)	GeneWise	intron	1468	1382	0.00	-	.	KK951476.1:subseq(167188,2587)-genewise-prediction-1
KK951476.1:subseq(167188,2587)	GeneWise	cds	1381	1236	0.00	-	1	KK951476.1:subseq(167188,2587)-genewise-prediction-1
KK951476.1:subseq(167188,2587)	GeneWise	intron	1235	1098	0.00	-	.	KK951476.1:subseq(167188,2587)-genewise-prediction-1
KK951476.1:subseq(167188,2587)	GeneWise	cds	1097	1000	0.00	-	2	KK951476.1:subseq(167188,2587)-genewise-prediction-1
//
