
genewise output
Score 292.03 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000867_2.0    1 MAARPGGWLGPAFALRMLLATVLQA                       V 
                     MAARPGGWLGPAFALRMLLATVLQA                       V 
                     MAARPGGWLGPAFALRMLLATVLQA                       V 
KK949903.1:subs 1000 aggccggtcgcgtgccattgagccgGTGAGTG  Intron 1   CAGg 
                     tccgcgggtgcctctgtttccttac<0-----[1075 : 6988]-0>t 
                     ggtggtcgtgggtgggggggtatag                       g 


SPP00000867_2.0   27 SAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLPLDPDCRGCCQEEA 
                     SAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLPLDPDCRGCCQEEA 
                     SAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLPLDPDCRGCCQEEA 
KK949903.1:subs 6992 tgtgggtttggtagtgttaatctattgccgctatcccgcgtcgttcggg 
                     cctgcatccacggatgtcgattggcgattgatattctacagggggaaac 
                     tacgagtgggtcagacccccgccccttttagccgtggttctaactgaaa 


SPP00000867_2.0   76 QFETKK                       LYAGAILEVCGXKLGRFPQV 
                     QFETKK                       LYAGAILEVCGXKLGRFPQV 
                     QFETKK                       LYAGAILEVCGXKLGRFPQV 
KK949903.1:subs 7139 ctgaaaGTGGTGT  Intron 2   CAGctgggacggtgtatgatccg 
                     atacaa<0-----[7157 :27428]-0>tacgcttatgggatggtcat 
                     atatag                       gtaatttagtaaagggctac 


SPP00000867_2.0  102 Q                          FVRSDKPKLFRGLQIK       
                     Q                          FVRSDKPKLFRGLQIK       
                     Q          A:A[gct]        FVRSDKPKLFRGLQIK       
KK949903.1:subs27489 cGGTATGTA  Intron 3   TAGCTtgaagacactagccaa       
                     a <1-----[27493:34407]-1>  ttggaacattggtata       
                     g                          ccgttacaacaaaacg       


SPP00000867_2.0  120                        YVRGSDPVLKLLDDNGNIAEELSILK 
                                            YVRGSDPVLKLLDDNGNIAEELSILK 
                                            YVRGSDPVLKLLDDNGNIAEELSILK 
KK949903.1:subs34458 GTAAAGT  Intron 4   TAGtgcgtgcgcactggagaagggcaaca 
                     <0-----[34458:36778]-0>atggcacttattaaagatcaatgtta 
                                            ttttactaagtgcctgcttaaaccca 


SPP00000867_2.0  146 WNTDSVEEFLSEKLERI                                 
                     WNTDSVEEFLSEKLERI                                 
                     WNTDSVEEFLSEKLERI                                 
KK949903.1:subs36857 taagagggtcagatgca                                 
                     gacagtaattgaatagt                                 
                     gcactaagcgtgggaca                                 


//
Making a A in phase 1 intron
>KK949903.1:subseq(1960242,37907).pep
MAARPGGWLGPAFALRMLLATVLQAVSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNL
LPLDPDCRGCCQEEAQFETKKLYAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQIKY
VRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI
//
>KK949903.1:subseq(1960242,37907).[1000:36907].sp
ATGGCGGCTCGGCCGGGTGGCTGGCTTGGGCCGGCGTTTGCGCTGCGGATGTTGTTGGCG
ACTGTACTTCAAGCGGTGTCTGCATTCGGGGCAGAGTTTTCGTCGGAGGCTTGCAGAGAG
TTAGGCTTCTCCAGCAACTTGCTCTGCAGCTCCTGTGATCTTCTTGGACAGTTCAACTTG
CTTCCGCTGGATCCTGACTGTCGAGGATGCTGTCAGGAAGAAGCACAATTTGAAACTAAA
AAGCTGTATGCAGGAGCTATTCTTGAAGTGTGTGGATGAAAATTGGGGAGGTTCCCTCAA
GTCCAGGCTTTCGTCAGGAGTGATAAACCCAAACTATTCAGAGGACTACAAATCAAGTAT
GTTCGTGGTTCAGACCCTGTACTAAAGCTTTTGGACGACAATGGGAACATTGCTGAAGAA
CTAAGCATCCTCAAATGGAACACAGACAGTGTAGAAGAGTTCCTGAGTGAGAAGTTGGAA
CGCATA
//
KK949903.1:subseq(1960242,37907)	GeneWise	match	1000	36907	292.03	+	.	KK949903.1:subseq(1960242,37907)-genewise-prediction-1
KK949903.1:subseq(1960242,37907)	GeneWise	cds	1000	1074	0.00	+	0	KK949903.1:subseq(1960242,37907)-genewise-prediction-1
KK949903.1:subseq(1960242,37907)	GeneWise	intron	1075	6988	0.00	+	.	KK949903.1:subseq(1960242,37907)-genewise-prediction-1
KK949903.1:subseq(1960242,37907)	GeneWise	cds	6989	7156	0.00	+	0	KK949903.1:subseq(1960242,37907)-genewise-prediction-1
KK949903.1:subseq(1960242,37907)	GeneWise	intron	7157	27428	0.00	+	.	KK949903.1:subseq(1960242,37907)-genewise-prediction-1
KK949903.1:subseq(1960242,37907)	GeneWise	cds	27429	27492	0.00	+	0	KK949903.1:subseq(1960242,37907)-genewise-prediction-1
KK949903.1:subseq(1960242,37907)	GeneWise	intron	27493	34407	0.00	+	.	KK949903.1:subseq(1960242,37907)-genewise-prediction-1
KK949903.1:subseq(1960242,37907)	GeneWise	cds	34408	34457	0.00	+	2	KK949903.1:subseq(1960242,37907)-genewise-prediction-1
KK949903.1:subseq(1960242,37907)	GeneWise	intron	34458	36778	0.00	+	.	KK949903.1:subseq(1960242,37907)-genewise-prediction-1
KK949903.1:subseq(1960242,37907)	GeneWise	cds	36779	36907	0.00	+	0	KK949903.1:subseq(1960242,37907)-genewise-prediction-1
//

genewise output
Score 17.28 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000867_2.0  146 WNTDSVEEFLS                                       
                     WN  SV+E+LS                                       
                     WNIKSVKEMLS                                       
KK949903.1:sub-33314 taaatgagact                                       
                     gatactaattc                                       
                     gtaatagagtc                                       


//
>KK949903.1:subseq(1960242,37907).pep
WNIKSVKEMLS
//
>KK949903.1:subseq(1960242,37907).[33314:33280].sp
TGGAATATAAAATCTGTAAAGGAAATGCTTTCC
//
KK949903.1:subseq(1960242,37907)	GeneWise	match	33314	33282	17.28	-	.	KK949903.1:subseq(1960242,37907)-genewise-prediction-1
KK949903.1:subseq(1960242,37907)	GeneWise	cds	33314	33282	0.00	-	0	KK949903.1:subseq(1960242,37907)-genewise-prediction-1
//
