
genewise output
Score 18.85 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000892_2.0   56 LFVGDLTPDVDDGMLYEFFVKVY                           
                     L  G++ PD+++G++   F+  Y                           
                     LRAGNVLPDLNEGFMGNHFIITY                           
KK950396.1:subs 1763 caggagccgcaggtagactaaat                           
                     tgcgattcataagttgaatttca                           
                     ggtcttatcgtatcgctctatat                           


//
>KK950396.1:subseq(549977,16857).pep
LRAGNVLPDLNEGFMGNHFIITY
//
>KK950396.1:subseq(549977,16857).[1763:1831].sp
CTGAGGGCTGGCAATGTTCTACCTGACCTGAATGAAGGTTTCATGGGCAATCACTTTATA
ATTACATAT
//
KK950396.1:subseq(549977,16857)	GeneWise	match	1763	1831	18.85	+	.	KK950396.1:subseq(549977,16857)-genewise-prediction-1
KK950396.1:subseq(549977,16857)	GeneWise	cds	1763	1831	0.00	+	0	KK950396.1:subseq(549977,16857)-genewise-prediction-1
//

genewise output
Score 502.48 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000892_2.0    1 IPAGYCFVEFADLATAEKCLHKINGKPLPGATP                 
                     IPAGYCFVEFADLATAEKCLHKINGKPLPGATP                 
                     IPAGYCFVEFADLATAEKCLHKINGKPLPGATP                 
KK950396.1:sub-15857 acggtttggtggtgaggattcaaagacccggac                 
                     tccgagttatcatcccaagtaatagactcgccc                 
                     catccctaacatgcatggtgtattgactaacat                 


SPP00000892_2.0   34                        AKRFKLNYATYGKQPDN          
                                            AKRFKLNYATYGKQPDN          
                                            AKRFKLNYATYGKQPDN          
KK950396.1:sub-15758 GTAAGGA  Intron 1   CAGgactacatgatgaccga          
                     <0-----[15758:15119]-0>cagtataaccagaacaa          
                                            aattagctcttgaaatc          


SPP00000892_2.0   51                           PEYSLFVGDLTPDVDDGMLYEFF 
                                               PEYSLFVGDLTPDVDDGMLYEFF 
                                S:S[agc]       PEYSLFVGDLTPDVDDGMLYEFF 
KK950396.1:sub-15067 AGGTAAGTA  Intron 2   CAGCcgttctgggcacgggggactgtt 
                       <2-----[15065:13621]-2> caactttgatccataagttaatt 
                                               tgccctggcgcatgctcgctacc 


SPP00000892_2.0   75 VKVYPS                          CGFFPCRGYGFVKFTDE 
                     VKVYPS                          CGFFPCRGYGFVKFTDE 
                     VKVYPS          L:L[ttg]        CGFFPCRGYGFVKFTDE 
KK950396.1:sub-13550 gagtctTGTCGGGG  Intron 3   TAGTGtgttctagtgtgatagg 
                     tatacc <1-----[13531:12200]-1>  ggttcgggagttatcaa 
                     cacccc                          ttttccgctttgacata 


SPP00000892_2.0   99 LEQKRALTECQGAVGLGSKPVRLSVAIPK                     
                     LEQKRALTECQGAVGLGSKPVRLSVAIPK                     
                     LEQKRALTECQGAVGLGSKPVRLSVAIPK                     
KK950396.1:sub-12146 cgcacgcagtcggggcgtacgccaggaca                     
                     taaagctcagagctgtgcactgtgtctca                     
                     aaggacgagcgaaaaggtaagggcgacta                     


SPP00000892_2.0  128                           SRVKPVEYSQMYSYSYNQYYQQY 
                                               SRVKPVEYSQMYSYSYNQYYQQY 
                                A:A[gcg]       SRVKPVEYSQMYSYSYNQYYQQY 
KK950396.1:sub-12059 GCGTGAGTC  Intron 4   AAGGacgacggtacatatatacttcct 
                       <2-----[12057: 8917]-2> ggtactaagatagagaaaaaaaa 
                                               ttggagattggctccccgtcggc 


SPP00000892_2.0  152 QNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ                   
                     QNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ                   
                     QNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ                   
KK950396.1:subs-8846 cattgctgtgcaagatatatcctgtacaaac                   
                     aaaacaggaaaacggagagacaagacagcta                   
                     gcctcggctcgcacccccttcgtctcgccgg                   


SPP00000892_2.0  183                        TYEEVGDDALE                
                                            TYEEVGDDALE                
                                            TYEEVGDDALE                
KK950396.1:subs-8753 GTAACTG  Intron 5   CAGatgggggggtg                
                     <0-----[8753 : 8536]-0>caaatgaacta                
                                            gtaacattaga                


SPP00000892_2.0  194                           PMPQLDVTEANKEFMEQSEELYD 
                                               PMPQLDVTEANKEFMEQSEELYD 
                               D:D[gac]        PMPQLDVTEANKEFMEQSEELYD 
KK950396.1:subs-8502 GGTAAGAA  Intron 6   CAGACcacccggaggaagtagcaggctg 
                      <1-----[8501 : 1134]-1>  ctcatatcacaaattaagaataa 
                                               cggggtgtgccggcgggcggact 


SPP00000892_2.0  218 ALMDCHWQPLDTVSSEIPAMM                             
                     ALMDCHWQPLDTVSSEIPAMM                             
                     ALMDCHWQPLDTVSSEIPAMM                             
KK950396.1:subs-1062 gcagtctcccgagttgacgaa                             
                     cttagagactactccatcctt                             
                     aggcttggcgcagtagcccgg                             


//
Making a S in phase 2 intron
Making a L in phase 1 intron
Making a A in phase 2 intron
Making a D in phase 1 intron
>KK950396.1:subseq(549977,16857).pep
IPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGD
LTPDVDDGMLYEFFVKVYPSLCGFFPCRGYGFVKFTDELEQKRALTECQGAVGLGSKPVR
LSVAIPKASRVKPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQST
MQTYEEVGDDALEDPMPQLDVTEANKEFMEQSEELYDALMDCHWQPLDTVSSEIPAMM
//
>KK950396.1:subseq(549977,16857).[15857:998].sp
ATCCCAGCTGGCTACTGCTTTGTAGAATTCGCAGATTTGGCCACAGCTGAGAAGTGTTTG
CATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCTGCAAAACGTTTTAAACTGAAC
TATGCCACTTATGGGAAACAACCAGATAACAGCCCTGAGTACTCCCTCTTTGTGGGGGAC
CTGACCCCAGATGTGGACGATGGCATGCTCTATGAATTCTTCGTCAAAGTCTACCCCTCC
TTGTGTGGTTTTTTTCCCTGCAGGGGCTATGGTTTTGTGAAATTCACAGATGAACTAGAA
CAGAAGCGAGCCCTGACAGAGTGCCAGGGAGCAGTAGGACTGGGGTCTAAACCAGTGCGG
CTGAGCGTGGCAATCCCTAAAGCGAGTCGTGTGAAGCCAGTGGAATATAGTCAGATGTAC
AGTTACAGCTACAACCAGTATTACCAGCAGTACCAGAACTACTATGCCCAGTGGGGCTAT
GACCAGAACACAGGCAGCTACAGCTACAGTTATCCCCAGTATGGCTATACCCAGAGCACC
ATGCAGACGTATGAAGAAGTCGGAGATGATGCATTGGAAGACCCCATGCCGCAGCTGGAT
GTGACTGAGGCCAACAAGGAGTTCATGGAGCAGAGCGAGGAGCTATACGATGCACTGATG
GACTGTCATTGGCAGCCCCTGGACACAGTGTCTTCAGAGATCCCCGCCATGATG
//
KK950396.1:subseq(549977,16857)	GeneWise	match	15857	1000	502.48	-	.	KK950396.1:subseq(549977,16857)-genewise-prediction-1
KK950396.1:subseq(549977,16857)	GeneWise	cds	15857	15759	0.00	-	0	KK950396.1:subseq(549977,16857)-genewise-prediction-1
KK950396.1:subseq(549977,16857)	GeneWise	intron	15758	15119	0.00	-	.	KK950396.1:subseq(549977,16857)-genewise-prediction-1
KK950396.1:subseq(549977,16857)	GeneWise	cds	15118	15066	0.00	-	0	KK950396.1:subseq(549977,16857)-genewise-prediction-1
KK950396.1:subseq(549977,16857)	GeneWise	intron	15065	13621	0.00	-	.	KK950396.1:subseq(549977,16857)-genewise-prediction-1
KK950396.1:subseq(549977,16857)	GeneWise	cds	13620	13532	0.00	-	1	KK950396.1:subseq(549977,16857)-genewise-prediction-1
KK950396.1:subseq(549977,16857)	GeneWise	intron	13531	12200	0.00	-	.	KK950396.1:subseq(549977,16857)-genewise-prediction-1
KK950396.1:subseq(549977,16857)	GeneWise	cds	12199	12058	0.00	-	2	KK950396.1:subseq(549977,16857)-genewise-prediction-1
KK950396.1:subseq(549977,16857)	GeneWise	intron	12057	8917	0.00	-	.	KK950396.1:subseq(549977,16857)-genewise-prediction-1
KK950396.1:subseq(549977,16857)	GeneWise	cds	8916	8754	0.00	-	1	KK950396.1:subseq(549977,16857)-genewise-prediction-1
KK950396.1:subseq(549977,16857)	GeneWise	intron	8753	8536	0.00	-	.	KK950396.1:subseq(549977,16857)-genewise-prediction-1
KK950396.1:subseq(549977,16857)	GeneWise	cds	8535	8502	0.00	-	0	KK950396.1:subseq(549977,16857)-genewise-prediction-1
KK950396.1:subseq(549977,16857)	GeneWise	intron	8501	1134	0.00	-	.	KK950396.1:subseq(549977,16857)-genewise-prediction-1
KK950396.1:subseq(549977,16857)	GeneWise	cds	1133	1000	0.00	-	2	KK950396.1:subseq(549977,16857)-genewise-prediction-1
//
