
genewise output
Score 2222.73 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000862_2.0    1 KNVKLSAEVEPFIPQKKNPDTFMIPMALPNENGNVSGVEPTPIPSYLIT 
                     KNVKLSAEVEPFIPQKKNPDTFMIPMALPNENGNVSGVEPTPIPSYLIT 
                     KNVKLSAEVEPFIPQKKNPDTFMIPMALPNENGNVSGVEPTPIPSYLIT 
KK950489.1:subs 1000 aagactggggctaccaaacgataacagccagagagtgggcacacatcaa 
                     aatatccatacttcaaaacactttctctcaaagatcgtaccctcgattc 
                     gtcggatggggtctgggtttctgctggcatgtatttcaaatatctcgtt 


SPP00000862_2.0   50 CYPFVQENQSN                          QFPLYNNDIRWQ 
                     CYPFVQENQSN                          QFPLYNNDIRWQ 
                     CYPFVQENQSN           R:R[aga]       QFPLYNNDIRWQ 
KK950489.1:subs 1147 ttctgcgactaAGGTAATTT  Intron 1   CAGActcttaagactc 
                     gacttaaaaca  <2-----[1182 : 3084]-2> atctaaaatgga 
                     ttgtggacgct                          gtaatcccaaga 


SPP00000862_2.0   74 QPNPNPAGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVMGFYHPFPTP 
                     QPNPNPAGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVMGFYHPFPTP 
                     QPNPNPAGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVMGFYHPFPTP 
KK950489.1:subs 3122 ccacacggctcgtcaatgcccgtagtattccacgctgcgagttcctcac 
                     acacaccgcatcacttccacctccaacaaattcccgcattgtaactccc 
                     gctactaaactccctattgatttagtattggggaatcatgactttttgt 


SPP00000862_2.0  123 YSNTFQAANAVNTITTECTERPNQLGQVFPLSSHRSRNSNRGPVVPK   
                     YSNTFQAANAVNTITTECTERPNQLGQVFPLSSHRSRNSNRGPVVPK   
                     YSNTFQAANAVNTITTECTERPNQLGQVFPLSSHRSRNSNRGPVVPK   
KK950489.1:subs 3269 ttaatcggaggaaaaagtagccaccgcgtcttaccaaaaaagcggca   
                     acactaccactactccagcagcaatgattctcgagggagaggcttca   
                     cccctgtattattacaactgtatgtagccggcttacactcaaagaaa   


SPP00000862_2.0  170                        QQLLQQHIKSKRPLVKNVATQKETNA 
                                            QQLLQQHIKSKRPLVKNVATQKETNA 
                                            QQLLQQHIKSKRPLVKNVATQKETNA 
KK950489.1:subs 3410 GTAAGTG  Intron 2   CAGccctcccaaaaactgaaggacagaag 
                     <0-----[3410 : 5069]-0>aattaaatagagcttaatccaaacac 
                                            ggtaagcaacagaggatattgagata 


SPP00000862_2.0  196 AGPDNRSKIVLLVDASQQT                          FPSD 
                     AGPDNRSKIVLLVDASQQT                          FPSD 
                     AGPDNRSKIVLLVDASQQT          D:D[gat]        FPSD 
KK950489.1:subs 5148 ggcgactaagccgggtccaGGTAAGGC  Intron 3   TAGATtctg 
                     cgcaagcatttttaccaac <1-----[5206 : 8921]-1>  tcca 
                     attttaaatgtgattagat                          caac 


SPP00000862_2.0  220 IANKSLSESSATMLWKSKGRRRRASHPTAESSSEQGASEADIDSDSGYC 
                     IANKSLSESSATMLWKSKGRRRRASHPTAESSSEQGASEADIDSDSGYC 
                     IANKSLSESSATMLWKSKGRRRRASHPTAESSSEQGASEADIDSDSGYC 
KK950489.1:subs 8936 agaatctgatgaactatagaaaagtccaggttagcggagggagagagtt 
                     tcaactcagcccttgacagggggccacccaccgaagcgacatagaggag 
                     ctcgtttgctcagcggcacggaagccttgacttgggtcagctctttccc 


SPP00000862_2.0  269 SPKHSNNQPAAGALRNPDSSTMSVCNIALI                    
                     SPKHSNNQPAAGALRNPDSSTMSVCNIALI                    
                     SPKHSNNQPAAGALRNPDSSTMSVCNIALI                    
KK950489.1:subs 9083 acacaaaccggggtaacgtaaaagtaagta                    
                     gcaagaaacccgctgacacgctgtgatctt                    
                     ccaccccgcaagtgattttccgtatcttgt                    


SPP00000862_2.0  299                           GVNWSNVTCQATQKKPWMEKNQT 
                                               GVNWSNVTCQATQKKPWMEKNQT 
                               C:C[tgt]        GVNWSNVTCQATQKKPWMEKNQT 
KK950489.1:subs 9173 TATCAGTT  Intron 4   CAGGTggattagatcgacaactagaaca 
                      <1-----[9174 :10001]-1>  gtagcatcgaccaaacgtaaaac 
                                               tatgctatcgatgaatggaatga 


SPP00000862_2.0  323 FSRGGRQTEQRNNSQ                       VGFRCRGHSTS 
                     FSRGGRQTEQRNNSQ                       VGFRCRGHSTS 
                     FSRGGRQTEQRNNSQ                       VGFRCRGHSTS 
KK950489.1:subs10073 ttaggacagcaaatcGTAATTT  Intron 5   TAGggtatcgcaat 
                     tcggggacaagaaca<0-----[10118:15592]-0>tgtggggagcc 
                     ttataggtagattag                       tacacaatctc 


SPP00000862_2.0  349 SERRQNLQKRQDNKQLNPSQSHRGNPNSESLYFE                
                     SERRQNLQKRQDNKQLNPSQSHRGNPNSESLYFE                
                     SERRQNLQKRQDNKQLNPSQSHRGNPNSESLYFE                
KK950489.1:subs15626 tgaacatcaacgaactacactcagacatgttttg                
                     caggaataagaaaaatacgacaggacacactata                
                     taaagtgagaattggacctattaccattgtgttg                


SPP00000862_2.0  383                        LDDLPENSPINIVQTPIPITTSVPKR 
                                            LDDLPENSPINIVQTPIPITTSVPKR 
                                            LDDLPENSPINIVQTPIPITTSVPKR 
KK950489.1:subs15728 GTATTTT  Intron 6   TAGtggtcgatcaaagcacacaaatgcac 
                     <0-----[15728:18089]-0>taatcaacctattacctctccctcag 
                                            gttatgcaactatgtatccatattat 


SPP00000862_2.0  409 AKSQKKKALAAALATAQEYSEISMEQKKLQVHFMYN              
                     AKSQKKKALAAALATAQEYSEISMEQKKLQVHFMY               
                     AKSQKKKALAAALATAQEYSEISMEQKKLQVHFMY!              
KK950489.1:subs18168 gaacaaagtgggcgagcgttgaaagcaatcgctat1              
                     cagaaaactccctcccaaacatgtaaaatatatta               
                     aatgggataaattcataataaatggaaaagattgc               


SPP00000862_2.0  445                           WKKNK-PCAAELEDMLAALEN-T 
                                                KKNK P   +L DMLAALE    
                               S:T[act]        GKKNKTPVQLDLGDMLAALEKQQ 
KK950489.1:subs18274 AGTAACTT  Intron 7   CAGCTgaaaaacgccgtggatggcgacc 
                      <1-----[18275:18407]-1>  gaaaacctatatgattcctaaaa 
                                               aagtactgggtggtgaatgaaaa 


SPP00000862_2.0  467 QAMKARQITNTRPLSCT                          VTAASF 
                     QAMKARQITNTRPLSCT                          VTAASF 
                     QAMKARQITNTRPLSCT          V:V[gtg]        VTAASF 
KK950489.1:subs18479 cgaagccaaaaaccttaGGTGATAC  Intron 8   TAGTGgaggtt 
                     actacgatcacgctcgc <1-----[18531:22023]-1>  tcccct 
                     aggagggtttgaaggta                          ctattt 


SPP00000862_2.0  491 HTKDSTNRKPLTKSQPCLTSFNSLDITSSKAKKGKEKEIAKLKRPTALK 
                     HTKDSTNRKPLTKSQPCLTSFNSLDITSSKAKKGKEKEIAKLKRPTALK 
                     HTKDSTNRKPLTKSQPCLTSFNSLDITSSKAKKGKEKEIAKLKRPTALK 
KK950489.1:subs22044 caagtaaaactaaaccttattattgaattagaagagagagacaccagca 
                     acaaccagactcagacgtcctactatcccacaagaaaatcatagcccta 
                     ctacttcaatatatgctgactttgcttctaaaaaaagataaaaacaata 


SPP00000862_2.0  540 K                       VILKEREEKKGRLTVDHNLLGSEEP 
                     K                       VILKEREEKKGRLTVDHNLLGSEEP 
                     K                       VILKEREEKKGRLTVDHNLLGSEEP 
KK950489.1:subs22191 aGTAAACC  Intron 9   TAGgatagaggaagctaggcactgtggc 
                     a<0-----[22194:22996]-0>tttaagaaaaggtctaaattgcaac 
                     g                       ttgaaagaggctatgccttgacgaa 


SPP00000862_2.0  566 VEMHLDFIDDLPQEIVSQE                          TGLS 
                     VEMHLDFIDDLPQEIVSQE                          TGLS 
                     VEMHLDFIDDLPQEIVSQE          D:D[gat]        TGLS 
KK950489.1:subs23072 ggactgtaggtccgagtcgGGTAAGAT  Intron 10  TAGATagca 
                     tatatattaatcaattcaa <1-----[23130:25201]-1>  cgtg 
                     aagcatttttgaggttcga                          tagc 


SPP00000862_2.0  590 MPSDTSLSPASQNSPYCMTPVSQGSPASSGIGSPMASSTITKIHSKRFR 
                     MPSDTSLSPASQNSPYCMTPVSQGSPASSGIGSPMASSTITKIHSKRFR 
                     MPSDTSLSPASQNSPYCMTPVSQGSPASSGIGSPMASSTITKIHSKRFR 
KK950489.1:subs25216 acagatctcgacatcttaacgtcgtcgatgagacagttaaaaacaaata 
                     tcgacctcccgaaccagtcctcagcccgcgtggctcccctcatagagtg 
                     gctttactaatgttgctgatgaaccgttcgactagatgtacatccaata 


SPP00000862_2.0  639                           YCNQVLCKEIDECVTLLLQELVS 
                                               YCNQVLCKEIDECVTLLLQELVS 
                                E:E[gag]       YCNQVLCKEIDECVTLLLQELVS 
KK950489.1:subs25363 GAGTAAGTT  Intron 11  CAGGttacgctagaggtgaccccgcga 
                       <2-----[25365:27201]-2> agaattgaataagtctttaattg 
                                               tttgtttagttgtgttccagctt 


SPP00000862_2.0  663 FQERIYQKDPVRAKARRRLVMGLREVTKHMKLNKIKCVIISPNCEKIQS 
                     FQERIYQKDPVRAKARRRLVMGLREVTKHMKLNKIKCVIISPNCEKIQS 
                     FQERIYQKDPVRAKARRRLVMGLREVTKHMKLNKIKCVIISPNCEKIQS 
KK950489.1:subs27272 tcgcatcagcgagagaaccgagcaggaacaacaaaatgaatcatgaact 
                     taagtaaaactgcacgggtttgtgatcaatataatagtttccagaatac 
                     cagcccagttcaaaggaggtgtgggtcatggacgcgttattactaacga 


SPP00000862_2.0  712 K                          GLDEALYNVIAMAREQEIPFVF 
                     K                          GLDEALYNVIAMAREQEIPFVF 
                     K          G:G[ggt]        GLDEALYNVIAMAREQEIPFVF 
KK950489.1:subs27419 aGGTAGGAA  Intron 12  CAGGTgcgggctagagagcgcgactgt 
                     a <1-----[27423:28404]-1>  gtaactaattctcgaaatcttt 
                     a                          cgtgtctttacgagaaatttgt 


SPP00000862_2.0  736 ALGRKALGRCVNKLVPVSVVGIFNYFGAE                     
                     ALGRKALGRCVNKLVPVSVVGIFNYFGAE                     
                     ALGRKALGRCVNKLVPVSVVGIFNYFGAE                     
KK950489.1:subs28473 gcgaagcgctgaacgcgagggatattgggGTAAGAC  Intron 13   
                     ctggactgggtaattctgttgttaatgca<0-----[28560:32070] 
                     ctaaataactgcggttttagacccctttg                     


SPP00000862_2.0  765    SLFNKLVALTEEARRAYKDMVAALEQEQAEEASKNVKKGPHHMGHS 
                        SLFNKLVALTEEARRAYKDMVAALEQEQAEEASKNVKKGPHHMGHS 
                        SLFNKLVALTEEARRAYKDMVAALEQEQAEEASKNVKKGPHHMGHS 
KK950489.1:subs32068 TAGactaatggcagggaagtagagggcgcgcggggtaagaagcccagct 
                     -0>gttaattctcaacggcaaattcctaaaacaaccaataagcaatgac 
                        tgctgaacctgacgaccatgtaaggaggcgacagcgggggccggct 


SPP00000862_2.0  811 RNPSAASAISFCSVISEPISEVNEKEY                       
                     RNPSAASAISFCSVISEPISEVNEKEY                       
                     RNPSAASAISFCSVISEPISEVNEKEY          E:E[gaa]     
KK950489.1:subs32209 cactggagatttagatgcatggagagtGGTAAGTT  Intron 14    
                     gaccccgctctggttcactcataaaaa <1-----[32291:36381]  
                     gcctaccctcccttttacctattagat                       


SPP00000862_2.0  838      TNWRNMVETSDGLETSENEREISCKHSTSEKPSKAPFDTAPVGK 
                          TNWRNMVETSDGLETSENEREISCKHSTSEKPSKAPFDTAPVGK 
                          TNWRNMVETSDGLETSENEREISCKHSTSEKPSKAPFDTAPVGK 
KK950489.1:subs36379 CAGAAaataaaggatggcgatgagcgattacaatgacaagctgagcgga 
                     -1>  caggattaccagtaccaaagatcgaagccaacgacctaccctga 
                          gtgacggatatagagaatgagtctgccataactatatcattagg 


SPP00000862_2.0  883 QPSLVAAGSATSATNPGKATVSEKEEVKPDDLEWASQQSTETGSLDGSC 
                     QPSLVAAGSATSATNPGKATVSEKEEVKPDDLEWASQQSTETGSLDGSC 
                     QPSLVAAGSATSATNPGKATVSEKEEVKPDDLEWASQQSTETGSLDGSC 
KK950489.1:subs36516 ccttggggagatgaacgagagagagggacggcgtgtccaagagttggat 
                     accttccggcccccacgacctgaaaatacaatagccaagcacgctaggg 
                     gatagcacttcatactgaaagcgagaggatcaagctggtagcctgtctc 


SPP00000862_2.0  932 RDLLNSSITSTTSTLVPGMLEEEDDEEEEEEEDYTHEPISVEVQLNSRI 
                     RDLLNSSITSTTSTLVPGMLEEEDDEEEEEEEDYTHEPISVEVQLNSRI 
                     RDLLNSSITSTTSTLVPGMLEEEDDEEEEEEEDYTHEPISVEVQLNSRI 
KK950489.1:subs36663 cgctattaaaaaaacgcgacgggggggggggggtacgcatgggccaaaa 
                     gattacctcgccgcttcgttaaaaaaaaaaaaaacaactctatataggt 
                     attgtcccccctcttattgtaagttaggggaatcttacataaagtttat 


SPP00000862_2.0  981 ESWVSETQRTMETLQLGKTLNGSEEDNAEPSGEEEAEAPEVLEPRMDSE 
                     ESWVSETQRTMETLQLGKTLNGSEEDNAEPSGEEEAEAPEVLEPRMDSE 
                     ESWVSETQRTMETLQLGKTLNGSEEDNAEPSGEEEAEAPEVLEPRMDSE 
KK950489.1:subs36810 gttgtgacaaagacccgaacagtgggaggcagggggggcggcgccagag 
                     acgtcacagctactatgactagcaaaacacggaaacaccattacgtaga 
                     gcggtgcaaggattgtaaggtttgactagatgagaagtagtggaggctg 


SPP00000862_2.0 1030 TWTTDHHANQEQQKPSSCSSL                             
                     TWTTDHHANQEQQKPSSCSSL                             
                     TWTTDHHANQEQQKPSSCSSL                             
KK950489.1:subs36957 ataagccgacgccacaatatc                             
                     cgccaaacaaaaaacggggct                             
                     cgttcccatgggggcccccgg                             


//
Making a R in phase 2 intron
Making a D in phase 1 intron
Making a C in phase 1 intron
Making a T in phase 1 intron
Making a V in phase 1 intron
Making a D in phase 1 intron
Making a E in phase 2 intron
Making a G in phase 1 intron
Making a E in phase 1 intron
>KK950489.1:subseq(484273,38019).pep
KNVKLSAEVEPFIPQKKNPDTFMIPMALPNENGNVSGVEPTPIPSYLITCYPFVQENQSN
RQFPLYNNDIRWQQPNPNPAGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVMGFYHPFP
TPYSNTFQAANAVNTITTECTERPNQLGQVFPLSSHRSRNSNRGPVVPKQQLLQQHIKSK
RPLVKNVATQKETNAAGPDNRSKIVLLVDASQQTDFPSDIANKSLSESSATMLWKSKGRR
RRASHPTAESSSEQGASEADIDSDSGYCSPKHSNNQPAAGALRNPDSSTMSVCNIALICG
VNWSNVTCQATQKKPWMEKNQTFSRGGRQTEQRNNSQVGFRCRGHSTSSERRQNLQKRQD
NKQLNPSQSHRGNPNSESLYFELDDLPENSPINIVQTPIPITTSVPKRAKSQKKKALAAA
LATAQEYSEISMEQKKLQVHFMYXTGKKNKTPVQLDLGDMLAALEKQQQAMKARQITNTR
PLSCTVVTAASFHTKDSTNRKPLTKSQPCLTSFNSLDITSSKAKKGKEKEIAKLKRPTAL
KKVILKEREEKKGRLTVDHNLLGSEEPVEMHLDFIDDLPQEIVSQEDTGLSMPSDTSLSP
ASQNSPYCMTPVSQGSPASSGIGSPMASSTITKIHSKRFREYCNQVLCKEIDECVTLLLQ
ELVSFQERIYQKDPVRAKARRRLVMGLREVTKHMKLNKIKCVIISPNCEKIQSKGGLDEA
LYNVIAMAREQEIPFVFALGRKALGRCVNKLVPVSVVGIFNYFGAESLFNKLVALTEEAR
RAYKDMVAALEQEQAEEASKNVKKGPHHMGHSRNPSAASAISFCSVISEPISEVNEKEYE
TNWRNMVETSDGLETSENEREISCKHSTSEKPSKAPFDTAPVGKQPSLVAAGSATSATNP
GKATVSEKEEVKPDDLEWASQQSTETGSLDGSCRDLLNSSITSTTSTLVPGMLEEEDDEE
EEEEEDYTHEPISVEVQLNSRIESWVSETQRTMETLQLGKTLNGSEEDNAEPSGEEEAEA
PEVLEPRMDSETWTTDHHANQEQQKPSSCSSL
//
>KK950489.1:subseq(484273,38019).[1000:18272].sp
AAGAATGTCAAGCTGTCAGCTGAGGTGGAGCCGTTTATCCCTCAGAAGAAGAATCCTGAT
ACCTTTATGATCCCTATGGCGCTCCCAAATGAGAATGGAAATGTTTCTGGCGTAGAACCA
ACTCCAATTCCCAGTTACCTGATTACTTGTTATCCGTTTGTGCAGGAAAACCAGTCCAAT
AGACAGTTTCCATTATATAACAACGACATACGATGGCAACAGCCCAATCCAAACCCTGCA
GGACCATACCTTGCCTACCCCATTATATCTGCTCAGCCACCTGTTTCTACAGAGTATACA
TATTATCAGCTGATGCCGGCACCATGTGCCCAAGTTATGGGATTCTATCATCCTTTTCCT
ACGCCTTACTCCAACACCTTTCAGGCTGCAAATGCTGTAAATACTATAACCACAGAATGC
ACTGAGCGTCCAAATCAGCTTGGACAGGTCTTCCCGTTGTCCAGTCATCGAAGCAGAAAC
AGTAACAGAGGACCAGTGGTACCAAAACAGCAGCTTTTACAACAGCACATAAAAAGCAAA
AGGCCATTGGTGAAAAATGTAGCTACTCAGAAAGAGACAAATGCAGCAGGTCCTGATAAT
CGATCAAAAATTGTGCTTCTGGTAGATGCTTCACAGCAAACTGATTTCCCATCAGACATC
GCTAACAAGTCTCTTTCTGAGAGCTCTGCCACAATGCTCTGGAAGTCCAAAGGCAGGAGG
AGAAGAGCGTCCCACCCTACTGCGGAATCCTCTAGTGAGCAGGGGGCTAGCGAAGCGGAC
ATTGACAGTGATAGTGGCTACTGCAGCCCCAAACACAGCAACAACCAGCCCGCAGCAGGG
GCTTTGAGAAATCCTGATTCTAGCACCATGAGTGTATGTAACATTGCTTTGATTTGTGGT
GTAAATTGGTCCAATGTAACTTGCCAGGCAACTCAGAAAAAACCTTGGATGGAAAAAAAT
CAGACATTTTCTAGAGGTGGAAGGCAGACTGAACAGAGAAATAATTCACAGGTTGGATTC
AGATGCCGAGGACATAGCACTTCCTCTGAAAGAAGACAGAATTTGCAAAAGAGACAAGAT
AATAAGCAGTTAAACCCCAGTCAATCTCATAGAGGCAACCCAAATTCTGAGTCTTTGTAT
TTTGAGTTGGATGATTTACCTGAGAACTCACCAATCAATATAGTTCAGACTCCAATTCCC
ATCACAACTTCAGTTCCTAAACGTGCAAAAAGTCAGAAGAAGAAAGCTTTAGCAGCAGCT
CTTGCCACAGCTCAAGAATATTCAGAAATAAGTATGGAGCAAAAAAAATTACAGGTACAT
TTTATGTAC
>KK950489.1:subseq(484273,38019).[18410:37019].sp
GGAAAAAAGAATAAAACCCCTGTGCAGCTGGATTTGGGGGATATGTTAGCAGCTCTGGAA
AAACAACAACAAGCGATGAAAGCGCGGCAGATTACTAATACGAGACCACTGTCGTGTACA
GTGGTCACTGCAGCTTCTTTTCACACTAAAGACTCTACTAACAGAAAACCTTTAACTAAA
AGTCAGCCCTGTTTGACATCCTTTAATTCTTTGGACATTACTTCCTCTAAAGCAAAAAAA
GGAAAAGAAAAGGAAATTGCAAAACTAAAACGACCCACAGCACTTAAAAAGGTTATTTTG
AAAGAAAGAGAGGAAAAGAAGGGCCGTTTAACTGTGGACCACAATCTTTTGGGATCCGAG
GAACCAGTAGAAATGCACTTAGATTTTATTGATGATTTGCCACAGGAGATTGTTTCCCAG
GAAGATACTGGACTGAGCATGCCCAGTGATACTTCACTCTCTCCAGCAAGTCAGAATTCT
CCGTACTGTATGACACCTGTGTCACAAGGCTCCCCGGCTAGTTCCGGGATAGGCAGTCCA
ATGGCATCTTCGACTATAACCAAAATTCACAGCAAAAGATTTAGAGAGTATTGTAATCAG
GTTCTTTGTAAAGAGATTGATGAGTGTGTGACTCTTCTCCTCCAAGAGCTCGTTAGTTTC
CAAGAGCGCATCTACCAAAAGGATCCTGTCAGAGCAAAAGCGAGGAGACGGCTGGTTATG
GGTCTGAGGGAGGTTACCAAACATATGAAGCTAAACAAGATCAAGTGTGTTATAATTTCT
CCAAACTGTGAAAAAATCCAGTCAAAAGGTGGCCTGGATGAGGCTCTCTATAATGTTATA
GCCATGGCACGGGAACAAGAAATTCCTTTTGTGTTTGCCCTTGGAAGAAAAGCTCTAGGA
CGCTGTGTGAACAAGCTGGTTCCTGTTAGTGTAGTGGGAATCTTCAACTACTTTGGTGCT
GAGAGTCTGTTCAATAAGTTAGTAGCCCTCACTGAGGAAGCCAGGAGAGCCTACAAAGAT
ATGGTTGCAGCACTGGAGCAAGAGCAGGCCGAGGAAGCCTCAAAGAACGTGAAGAAGGGG
CCGCACCACATGGGGCACTCTCGGAACCCCTCTGCAGCCAGCGCCATTTCCTTCTGCAGT
GTTATTTCTGAACCCATCTCTGAAGTTAATGAAAAGGAATATGAAACGAATTGGAGAAAC
ATGGTGGAAACTTCAGATGGACTGGAAACGTCAGAAAATGAGCGAGAGATTTCCTGTAAG
CACAGCACATCTGAAAAACCCAGTAAAGCTCCATTTGACACAGCTCCTGTAGGGAAGCAG
CCATCTTTAGTGGCCGCAGGCAGTGCTACCTCAGCTACAAACCCTGGGAAAGCAACAGTG
AGCGAGAAAGAGGAAGTGAAGCCAGATGACCTAGAATGGGCCTCTCAGCAGAGTACAGAG
ACCGGCTCTTTGGATGGCAGTTGCCGAGATCTTTTGAATTCCTCCATCACCAGCACCACT
AGCACTCTTGTACCTGGTATGCTTGAAGAAGAGGATGATGAAGAGGAGGAGGAGGAAGAA
GATTACACTCATGAACCCATATCTGTAGAAGTACAGCTTAATAGTAGAATTGAGTCCTGG
GTGTCTGAGACCCAAAGAACGATGGAAACTCTTCAGCTTGGAAAAACGCTGAATGGTTCT
GAGGAAGACAATGCAGAGCCAAGTGGGGAAGAGGAAGCAGAGGCTCCAGAGGTTCTGGAG
CCACGGATGGACAGTGAGACCTGGACTACTGACCACCACGCAAATCAGGAGCAGCAGAAG
CCCAGCAGCTGCAGCTCGCTG
//
KK950489.1:subseq(484273,38019)	GeneWise	match	1000	18272	946.18	+	.	KK950489.1:subseq(484273,38019)-genewise-prediction-1
KK950489.1:subseq(484273,38019)	GeneWise	cds	1000	1181	0.00	+	0	KK950489.1:subseq(484273,38019)-genewise-prediction-1
KK950489.1:subseq(484273,38019)	GeneWise	intron	1182	3084	0.00	+	.	KK950489.1:subseq(484273,38019)-genewise-prediction-1
KK950489.1:subseq(484273,38019)	GeneWise	cds	3085	3409	0.00	+	1	KK950489.1:subseq(484273,38019)-genewise-prediction-1
KK950489.1:subseq(484273,38019)	GeneWise	intron	3410	5069	0.00	+	.	KK950489.1:subseq(484273,38019)-genewise-prediction-1
KK950489.1:subseq(484273,38019)	GeneWise	cds	5070	5205	0.00	+	0	KK950489.1:subseq(484273,38019)-genewise-prediction-1
KK950489.1:subseq(484273,38019)	GeneWise	intron	5206	8921	0.00	+	.	KK950489.1:subseq(484273,38019)-genewise-prediction-1
KK950489.1:subseq(484273,38019)	GeneWise	cds	8922	9173	0.00	+	2	KK950489.1:subseq(484273,38019)-genewise-prediction-1
KK950489.1:subseq(484273,38019)	GeneWise	intron	9174	10001	0.00	+	.	KK950489.1:subseq(484273,38019)-genewise-prediction-1
KK950489.1:subseq(484273,38019)	GeneWise	cds	10002	10117	0.00	+	2	KK950489.1:subseq(484273,38019)-genewise-prediction-1
KK950489.1:subseq(484273,38019)	GeneWise	intron	10118	15592	0.00	+	.	KK950489.1:subseq(484273,38019)-genewise-prediction-1
KK950489.1:subseq(484273,38019)	GeneWise	cds	15593	15727	0.00	+	0	KK950489.1:subseq(484273,38019)-genewise-prediction-1
KK950489.1:subseq(484273,38019)	GeneWise	intron	15728	18089	0.00	+	.	KK950489.1:subseq(484273,38019)-genewise-prediction-1
KK950489.1:subseq(484273,38019)	GeneWise	cds	18090	18272	0.00	+	0	KK950489.1:subseq(484273,38019)-genewise-prediction-1
KK950489.1:subseq(484273,38019)	GeneWise	match	18410	37019	1296.97	+	.	KK950489.1:subseq(484273,38019)-genewise-prediction-2
KK950489.1:subseq(484273,38019)	GeneWise	cds	18410	18530	0.00	+	0	KK950489.1:subseq(484273,38019)-genewise-prediction-2
KK950489.1:subseq(484273,38019)	GeneWise	intron	18531	22023	0.00	+	.	KK950489.1:subseq(484273,38019)-genewise-prediction-2
KK950489.1:subseq(484273,38019)	GeneWise	cds	22024	22193	0.00	+	2	KK950489.1:subseq(484273,38019)-genewise-prediction-2
KK950489.1:subseq(484273,38019)	GeneWise	intron	22194	22996	0.00	+	.	KK950489.1:subseq(484273,38019)-genewise-prediction-2
KK950489.1:subseq(484273,38019)	GeneWise	cds	22997	23129	0.00	+	0	KK950489.1:subseq(484273,38019)-genewise-prediction-2
KK950489.1:subseq(484273,38019)	GeneWise	intron	23130	25201	0.00	+	.	KK950489.1:subseq(484273,38019)-genewise-prediction-2
KK950489.1:subseq(484273,38019)	GeneWise	cds	25202	25364	0.00	+	2	KK950489.1:subseq(484273,38019)-genewise-prediction-2
KK950489.1:subseq(484273,38019)	GeneWise	intron	25365	27201	0.00	+	.	KK950489.1:subseq(484273,38019)-genewise-prediction-2
KK950489.1:subseq(484273,38019)	GeneWise	cds	27202	27422	0.00	+	1	KK950489.1:subseq(484273,38019)-genewise-prediction-2
KK950489.1:subseq(484273,38019)	GeneWise	intron	27423	28404	0.00	+	.	KK950489.1:subseq(484273,38019)-genewise-prediction-2
KK950489.1:subseq(484273,38019)	GeneWise	cds	28405	28559	0.00	+	2	KK950489.1:subseq(484273,38019)-genewise-prediction-2
KK950489.1:subseq(484273,38019)	GeneWise	intron	28560	32070	0.00	+	.	KK950489.1:subseq(484273,38019)-genewise-prediction-2
KK950489.1:subseq(484273,38019)	GeneWise	cds	32071	32290	0.00	+	0	KK950489.1:subseq(484273,38019)-genewise-prediction-2
KK950489.1:subseq(484273,38019)	GeneWise	intron	32291	36381	0.00	+	.	KK950489.1:subseq(484273,38019)-genewise-prediction-2
KK950489.1:subseq(484273,38019)	GeneWise	cds	36382	37019	0.00	+	2	KK950489.1:subseq(484273,38019)-genewise-prediction-2
//

genewise output
Score 18.95 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000862_2.0  361 NKQLNPSQSHRGNPNSESLYF                             
                     NK +N S+  R N N  SL F                             
                     NKFINVSECKRSNTNRSSLTF                             
KK950489.1:sub-36164 aataagtgtaataaaaattat                             
                     aattatcagagcacaggctct                             
                     tgtttcaacaattccgcaggc                             


//
>KK950489.1:subseq(484273,38019).pep
NKFINVSECKRSNTNRSSLTF
//
>KK950489.1:subseq(484273,38019).[36164:36100].sp
AATAAGTTTATTAATGTCTCAGAATGCAAAAGATCTAATACCAACAGGAGCTCATTGACG
TTC
//
KK950489.1:subseq(484273,38019)	GeneWise	match	36164	36102	18.95	-	.	KK950489.1:subseq(484273,38019)-genewise-prediction-1
KK950489.1:subseq(484273,38019)	GeneWise	cds	36164	36102	0.00	-	0	KK950489.1:subseq(484273,38019)-genewise-prediction-1
//
