
genewise output
Score 17.40 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000853_2.0  122 LKRYSHSCCRMPVPPTSELLGSP                           
                     ++R    C R+P  PTS L   P                           
                     VERSGPDCPRLPTVPTSGLCSVP                           
KK950207.1:subs 2675 ggctgcgtccccagcaagcttgc                           
                     tagcgcagcgtcctccggtgctc                           
                     gatagatctgccagcccagcaca                           


//
>KK950207.1:subseq(204043,4482).pep
VERSGPDCPRLPTVPTSGLCSVP
//
>KK950207.1:subseq(204043,4482).[2675:2743].sp
GTGGAACGTTCAGGGCCAGATTGCCCTCGGCTCCCCACAGTGCCCACCAGCGGACTGTGC
TCAGTCCCA
//
KK950207.1:subseq(204043,4482)	GeneWise	match	2675	2743	17.40	+	.	KK950207.1:subseq(204043,4482)-genewise-prediction-1
KK950207.1:subseq(204043,4482)	GeneWise	cds	2675	2743	0.00	+	0	KK950207.1:subseq(204043,4482)-genewise-prediction-1
//

genewise output
Score 331.36 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000853_2.0    1 DCHAGVSGTIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYXGLTGQY 
                     DCHAGVSGTIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYXGLTGQY 
                     DCHAGVSGTIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYXGLTGQY 
KK950207.1:subs-3482 gtcgggagaatgtggcaaggggtactactggatactgaggattgtagct 
                     agacgtggctaaagctctagaaatctaaacgaattttatcgaggtcgaa 
                     ccttcgtccctgtactcctgagccttggtacaccctccgcccacgacgc 


SPP00000853_2.0   50 V                          LNALQEEFAPFGLVILGFPSNQ 
                     V                                     GLVILGFPSNQ 
                     V          E:V[gtt]        -----------GLVILGFPSNQ 
KK950207.1:subs-3335 gGGTAAGTG  Intron 1   NNNTT           gcgacgtcaac 
                     t <1-----[3331 : 2248]-1>             gttttgtcgaa 
                     t                                     tgctgccccca 


SPP00000853_2.0   74 FGKQEPGENSEIPLTL                          YVRPGGG 
                     FGKQEPGENSEIPLTL                          YVRPGGG 
                     FGKQEPGENSEIPLTL           K:K[aag]       YVRPGGG 
KK950207.1:subs-2212 tgacgcggatgaccacAAGTGAGTG  Intron 2   TAGGtgccggg 
                     tgaaacgaacatctct  <2-----[2162 : 1723]-2> atgcggg 
                     caagaaagcggcaccc                          tcgatcc 


SPP00000853_2.0   98 FVPNFQLFEKGDVNGEKEQKFYTFLK                        
                     FVPNFQLFEKGDVNGEKEQKFYTFLK                        
                     FVPNFQLFEKGDVNGEKEQKFYTFLK                        
KK950207.1:subs-1700 tgcatcctgagggaggagcattatcaGTAAGTG  Intron 3   CAG 
                     ttcatattaagatagaaaaatactta<0-----[1622 : 1224]-0> 
                     tcctcactgagtgcggagggccacgg                        


SPP00000853_2.0  124 --RYSHSCCRMPVPPTSELLGSPDRLFWEPMKIHDIRWNFEKFLVGPDG 
                       RYSHSCCRMP PPTSELLGSPDRLFWEPMKIHDIRWNFEKFLVGPDG 
                     GXRYSHSCCRMP!PPTSELLGSPDRLFWEPMKIHDIRWNFEKFLVGPDG 
KK950207.1:subs-1223 gtcttctttaac2ccatgccgtcgccttgcaaacgactatgatcggcgg 
                     gggacacgggtc ccccattgccagttgactataatggataatttgcag 
                     tactttcccagt cgcggcgcatccccgacggctcccgctggcgggacc 


SPP00000853_2.0  171 KPIMRWYHRTTVNTVKMDILAYMRRE                        
                     KPIMRWYHRTTVNTVKMDILAYMRRE                        
                     KPIMRWYHRTTVNTVKMDILAYMRRE                        
KK950207.1:subs-1077 acaacttccaagaagaagacgtaacg                        
                     acttggaagcctactatattcatgga                        
                     accgcgccgcgccccggcagccgggg                        


//
Making a V in phase 1 intron
Making a K in phase 2 intron
>KK950207.1:subseq(204043,4482).pep
DCHAGVSGTIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYXGLTGQYVVGLVILGFPS
NQFGKQEPGENSEIPLTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKGXRYSHSC
CRMPXPPTSELLGSPDRLFWEPMKIHDIRWNFEKFLVGPDGKPIMRWYHRTTVNTVKMDI
LAYMRRE
//
>KK950207.1:subseq(204043,4482).[3482:1186].sp
GACTGCCATGCTGGCGTGAGTGGCACCATCTATGAGTATGGAGCCCTTACCATCGATGGG
GAAGAGTACATCCCTTTTAAGCAGTATGCAGGCAAATACATCCTCTTTGTCAACGTGGCC
AGCTACTGAGGCTTGACAGGCCAGTACGTTGTTGGTCTGGTCATTCTGGGCTTCCCCAGC
AACCAATTCGGAAAACAGGAACCAGGAGAGAACTCGGAGATCCCACTCACCCTCAAGTAT
GTCCGGCCAGGTGGCGGCTTTGTCCCCAATTTCCAACTCTTTGAGAAAGGGGATGTGAAC
GGGGAGAAAGAGCAGAAGTTCTACACATTCCTGAAGGGTTGACGCTATTCTCATTCCTGC
TGCAGAATGCCT
>KK950207.1:subseq(204043,4482).[1185:998].sp
CCCCCGACCTCGGAGCTCCTGGGCTCACCTGACCGCCTCTTCTGGGAACCCATGAAGATC
CATGACATCCGCTGGAACTTTGAGAAGTTCCTGGTGGGGCCAGACGGCAAACCCATCATG
CGCTGGTACCACCGGACCACGGTCAACACCGTCAAGATGGACATACTGGCCTACATGAGG
CGGGAG
//
KK950207.1:subseq(204043,4482)	GeneWise	match	3482	1188	196.94	-	.	KK950207.1:subseq(204043,4482)-genewise-prediction-1
KK950207.1:subseq(204043,4482)	GeneWise	cds	3482	3332	0.00	-	0	KK950207.1:subseq(204043,4482)-genewise-prediction-1
KK950207.1:subseq(204043,4482)	GeneWise	intron	3331	2248	0.00	-	.	KK950207.1:subseq(204043,4482)-genewise-prediction-1
KK950207.1:subseq(204043,4482)	GeneWise	cds	2247	2163	0.00	-	2	KK950207.1:subseq(204043,4482)-genewise-prediction-1
KK950207.1:subseq(204043,4482)	GeneWise	intron	2162	1723	0.00	-	.	KK950207.1:subseq(204043,4482)-genewise-prediction-1
KK950207.1:subseq(204043,4482)	GeneWise	cds	1722	1623	0.00	-	1	KK950207.1:subseq(204043,4482)-genewise-prediction-1
KK950207.1:subseq(204043,4482)	GeneWise	intron	1622	1224	0.00	-	.	KK950207.1:subseq(204043,4482)-genewise-prediction-1
KK950207.1:subseq(204043,4482)	GeneWise	cds	1223	1188	0.00	-	0	KK950207.1:subseq(204043,4482)-genewise-prediction-1
KK950207.1:subseq(204043,4482)	GeneWise	match	1185	1000	166.25	-	.	KK950207.1:subseq(204043,4482)-genewise-prediction-2
KK950207.1:subseq(204043,4482)	GeneWise	cds	1185	1000	0.00	-	0	KK950207.1:subseq(204043,4482)-genewise-prediction-2
//
