
genewise output
Score 546.64 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000849_2.0    1 MGLPRAGLWLKRLWVLLQVALQVAVGKVLLTLFPDRVKQHIVAMNQKNP 
                     MGLPRAGLWLKRLWVLLQVALQVAVGKVLLTLFPDRVKQHIVAMNQKNP 
                     MGLPRAGLWLKRLWVLLQVALQVAVGKVLLTLFPDRVKQHIVAMNQKNP 
KK954861.1:subs 1000 agcccggctcaactgcccggccggggagccactcgagaccaggaacaac 
                     tgtcgcgtgtagtgtttatctatctgatttcttcagtaaattctaaaac 
                     gggcgaggggagcggcgggctagcgcagggagttcacggccgcgcggct 


SPP00000849_2.0   50 HFSYDNWVPTLYSTQYFWFVLKVHWQRLEDTTKRGGLAPNSPVVRLSGQ 
                     HFSYDNWVPTLYSTQYFWFVLKVHWQRLEDTTKRGGLAPNSPVVRLSGQ 
                     HFSYDNWVPTLYSTQYFWFVLKVHWQRLEDTTKRGGLAPNSPVVRLSGQ 
KK954861.1:subs 1147 ctttgatgcactaacttttgcagctcccggaaaaggcgcaacggcctgc 
                     atcaaagtcctagcaatgtttatagagtaaccagggtccagcttgtcga 
                     ccccccgcgcccccgtcgtcggctggaagcgtgagtgcacccgcccagg 


SPP00000849_2.0   99 RCNIWDFMQ                          NRPLVLNFGSCTXP 
                     RCNIWDFMQ                          NRPLVLNFGSCTXP 
                     RCNIWDFMQ          G:G[ggc]        NRPLVLNFGSCTXP 
KK954861.1:subs 1294 ataatgtacGGTCAGGA  Intron 1   TAGGCaactgcatgatatc 
                     ggatgatta <1-----[1322 : 9671]-1>  agctttatgggcgc 
                     gcctgccga                          cgagggttattcac 


SPP00000849_2.0  123 SFLFKFDQFKRLIEDFSSIADFLIIYIEEAHAS                 
                     SFLFKFDQFKRLIEDFSSIADFLIIYIEEAHAS                 
                     SFLFKFDQFKRLIEDFSSIADFLIIYIEEAHAS                 
KK954861.1:subs 9716 ttctatgctaacaggtataggtcaatagggcgt                 
                     ctttataatagttaatgctcattttataacacc                 
                     attcatcacgattacctcaaccccccaaaacaa                 


SPP00000849_2.0  156                           GWAFKNNVVIRNHRNLQDRLRAA 
                                               GWAFKNNVVIRNHRNLQDRLRAA 
                               D:D[gat]        GWAFKNNVVIRNHRNLQDRLRAA 
KK954861.1:subs 9815 GGTACAGA  Intron 2   CAGATgtgtaaaggaaaccaccgcccgg 
                      <1-----[9816 :15000]-1>  ggctaaatttgaagataagtgcc 
                                               cgttgccgccgtcatcgccggac 


SPP00000849_2.0  180 RLLLDRSPPCPVVVDSMENRSSQLYAALPDRLYVLQARRILYK       
                     RLLLDRSPPCPVVVDSMENRSSQLYAALPDRLYVLQARRILYK       
                     RLLLDRSPPCPVVVDSMENRSSQLYAALPDRLYVLQARRILYK       
KK954861.1:subs15072 ccccgaacctcggggaagacaacctggccgactgccgcaacta       
                     gtttaggccgctttagtaagggatacctcagtattacggttaa       
                     cgggcgcggctgggccggcgccgccgggccgccggggcgcccg       


SPP00000849_2.0  223                        GKPGPWNYHPEEVRAVLEKLHS     
                                            GKPGPWNYHPEEVRAVLEKLHS     
                                            GKPGPWNYHPEEVRAVLEKLHS     
KK954861.1:subs15201 GTGGGGC  Intron 3   CAGgacgctatccgggcggcgacca     
                     <0-----[15201:17180]-0>gacgcgaaacaatgcttaatag     
                                            tatctgcctagattttaagcct     


//
Making a G in phase 1 intron
Making a D in phase 1 intron
>KK954861.1:subseq(1619,18246).pep
MGLPRAGLWLKRLWVLLQVALQVAVGKVLLTLFPDRVKQHIVAMNQKNPHFSYDNWVPTL
YSTQYFWFVLKVHWQRLEDTTKRGGLAPNSPVVRLSGQRCNIWDFMQGNRPLVLNFGSCT
XPSFLFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNNVVIRNHRNLQDRLRAAR
LLLDRSPPCPVVVDSMENRSSQLYAALPDRLYVLQARRILYKGKPGPWNYHPEEVRAVLE
KLHS
//
>KK954861.1:subseq(1619,18246).[1000:17246].sp
ATGGGGCTGCCCCGGGCAGGGCTGTGGCTGAAAAGGCTCTGGGTGCTCCTGCAGGTGGCC
CTTCAAGTGGCCGTGGGCAAAGTGCTGCTGACACTGTTTCCTGACAGAGTCAAGCAGCAC
ATCGTGGCCATGAACCAGAAGAACCCTCACTTCTCCTACGACAACTGGGTCCCGACCCTC
TACAGCACCCAGTATTTCTGGTTTGTCCTGAAGGTCCATTGGCAGCGACTAGAGGACACG
ACTAAGAGAGGGGGTCTGGCCCCAAACAGCCCCGTGGTCCGCCTCTCAGGGCAGAGGTGC
AACATTTGGGACTTCATGCAAGGCAACAGGCCATTGGTGCTGAATTTTGGAAGTTGTACC
TGACCCTCATTTCTTTTCAAATTTGACCAATTCAAGAGACTTATTGAAGACTTCAGTTCC
ATAGCAGACTTCCTCATCATCTACATAGAAGAAGCACACGCATCAGATGGCTGGGCTTTT
AAGAACAACGTGGTCATCAGGAATCACCGAAATCTCCAGGACCGCCTGCGGGCAGCCCGC
CTGCTGCTGGACAGGAGCCCGCCGTGCCCTGTGGTGGTGGACAGCATGGAGAACCGGAGC
AGCCAGCTCTACGCGGCGCTGCCCGACAGGCTCTACGTGCTGCAGGCGCGCAGGATCCTC
TACAAGGGTAAACCTGGCCCTTGGAACTACCATCCAGAGGAAGTTCGTGCTGTTCTAGAA
AAGCTCCACAGT
//
KK954861.1:subseq(1619,18246)	GeneWise	match	1000	17246	546.64	+	.	KK954861.1:subseq(1619,18246)-genewise-prediction-1
KK954861.1:subseq(1619,18246)	GeneWise	cds	1000	1321	0.00	+	0	KK954861.1:subseq(1619,18246)-genewise-prediction-1
KK954861.1:subseq(1619,18246)	GeneWise	intron	1322	9671	0.00	+	.	KK954861.1:subseq(1619,18246)-genewise-prediction-1
KK954861.1:subseq(1619,18246)	GeneWise	cds	9672	9815	0.00	+	2	KK954861.1:subseq(1619,18246)-genewise-prediction-1
KK954861.1:subseq(1619,18246)	GeneWise	intron	9816	15000	0.00	+	.	KK954861.1:subseq(1619,18246)-genewise-prediction-1
KK954861.1:subseq(1619,18246)	GeneWise	cds	15001	15200	0.00	+	2	KK954861.1:subseq(1619,18246)-genewise-prediction-1
KK954861.1:subseq(1619,18246)	GeneWise	intron	15201	17180	0.00	+	.	KK954861.1:subseq(1619,18246)-genewise-prediction-1
KK954861.1:subseq(1619,18246)	GeneWise	cds	17181	17246	0.00	+	0	KK954861.1:subseq(1619,18246)-genewise-prediction-1
//

genewise output
Score 17.32 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000849_2.0  226 GPWNYH                                            
                     GPWN H                                            
                     GPWNMH                                            
KK954861.1:sub-10972 gctaac                                            
                     gcgata                                            
                     gcgcgt                                            


//
>KK954861.1:subseq(1619,18246).pep
GPWNMH
//
>KK954861.1:subseq(1619,18246).[10972:10953].sp
GGGCCCTGGAACATGCAT
//
KK954861.1:subseq(1619,18246)	GeneWise	match	10972	10955	17.32	-	.	KK954861.1:subseq(1619,18246)-genewise-prediction-1
KK954861.1:subseq(1619,18246)	GeneWise	cds	10972	10955	0.00	-	0	KK954861.1:subseq(1619,18246)-genewise-prediction-1
//
