Protein prediction
Predicted by: exonerate Blastx evalue: 2e-27
Query protein: gi|223461567|gb|AAI41294.1| RIKEN cDNA 1300018J18 gene [Mus musculus]
Positions on query: 1-667 Query length: 667

Target name: KL201108.1:subseq_1394544,30155_
Positions on target: 4039-4586,9534-9737,10996-11182,12530-12660,13267-13547,15010-15154,15751-15936,16080-16236,16327-16488 Strand: +
Has a Redox Box!


  Query   MASVRAAVGASLAVARTRPRCVGLALPSSAPRSAWAAAMEPTPRWLAGLRFDNRALRELPVETPPPGPED
          |||/|||  |||| |  ||  /       |  |/| ||||| ||||||||||||||| ||||  ||||||
  Target  MASLRAAFCASLAAAGVRPPALRATRLPPALWSSWTAAMEPAPRWLAGLRFDNRALRALPVE--PPGPED
          agtcaggttgtcgggggcccgccgaccccgcttttaggagcgcctcggcctgacgccgccgg--ccgcgg
          tcctgcctgcctcccgtgccctgccgtccctgccgccctacccggtcgtgtaagctgctcta--ccgcaa
          gctcgcgcttgcgccatgggtctcgcgccgcgccgcccggcggggggggccccccgcagggg--gcgcgc
                                                                                
  
  Query   SLATPRPVPGACFSRARPAPLRRPRLVALSEPALALLGLEASEEAEVEAEAALFFSGNALLPGTEPAAHC
          /| ||| | ||||||| ||||| ||/|||| |||||||||   /|/ |||||||||||||||| ||||||
  Target  ALRTPRRVSGACFSRALPAPLRLPRVVALSGPALALLGLE-DADADAEAEAALFFSGNALLPGAEPAAHC
          gccacccgtggttacgccgctccccgggctgcgcgccgcg-gggggggggggcttagagcccgggcggct
          ctgccggtcgcgtggctccctgtcgttctcgcctcttgta-acacacacacctttggacttcgcacccag
          ggcgccggcaccccccgccgggcgccgggggcggggaggg-ccccccgggcgccccccgggccggtcgcc
                                                                                
  
  Query   YCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFSR <---Intron---> QADGRKVL
          |||||||||||||||||||||||||||||||||||||||||||||| <   4947bp   > ||||||||
  Target  YCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFSR                QADGRKVL
          ttgcctgctggccgggggatcgggtaggggctgcccagggcactta                cgggcagc
          aggaatgatcgatgagcctatgatgcccgaggatatagcgccctcg                acaggatt
          ccacgccgttgggcccccgcgcggcgggtgcggggcgccccgccc                aaattcact
                                                                                
  
  Query   RSSIREFLCSEAMFHLGIPTTRAGACVTSESTVMRDVFYDGNPKYEKCTVVLRIAPTFIR <---Intro
          |||||||||||||||||||||||||||||||||/|||||||||||||||||||||||||| <   1258b
  Target  RSSIREFLCSEAMFHLGIPTTRAGACVTSESTVVRDVFYDGNPKYEKCTVVLRIAPTFIR          
          ctaacgtctaggatccgacaaagggtgatgtaggcggttggacatgataggtcagcataa          
          gcgtgattggacttatgtcccgcgcgtccaccttgattaagacaaaagctttgtcccttg          
          gacctgcgctacgtcggcccagtgcctatgcaggccgtttttaatagcgtggtatctta           
                                                                                
  
  Query   n---> FGSFEIFKPPDEHTGRAGPSVGRDDIRVQLLDYVISSFYPEIQAAHTCDTDNIQRNAAFFRE <
          p   > |||||||||||||||||||||||/|||||/|||||||||||||||| || |//||||||||| <
  Target        FGSFEIFKPPDEHTGRAGPSVGRNDIRVQMLDYVISSFYPEIQAAHACDNDSVQRNAAFFRE  
                tgttgataccggcagcggcaggcagacgcacgtgaatttcgacggcgtgagagcaaggttag  
                tgctattaccaaacggcgcgtggaatgtattaattgctacataccacgaaagtagaccttga  
               gtcctgttgcttgcagaacctgggtccacggtctgcttcctacgtccctctccgggttcccgg  
                                                                                
  
  Query   ---Intron---> VTQRTARMVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDR <---Intron-
             1347bp   > ||/||||||||||||||||||||||||||||||||||||||||| <   606bp  
  Target                VTRRTARMVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDR            
                        gaccagcagggtctggttcggcaagaaaaggcaagtgctgtcga            
                        tcggccgttcagagtgtgagttacaatgttgtctaagctgttag            
                        aaaaaagggtaggttcccttgcctccgccggcctctaccctgc             
                                                                                
  
  Query   --> YDPDHICNASDNAGRYTYSKQPQVCKWNLQKLAEALEPELPLAAAEAILKEEFDTEFQRHYLQKMR
            > |||||/|||||| |||||||||||||||||||||||||||||| /|||| |||||/||||||||||
  Target      YDPDHVCNASDNTGRYTYSKQPQVCKWNLQKLAEALEPELPLALSEAILTEEFDTQFQRHYLQKMR
              tgcgcgtagtgaagctataacccgtataccacgggtgcgcccgcaggacaggtgactcactccaac
              aacaatgaccaacggacagaacatgagataatcactacatctctgacttcaatacatagaataatg
             gtctctgttcccttgccatcggcgacggtggagcgaggtggctcgcgccaaggtccgcagctaaggc
                                                                                
  
  Query   KKLGLIRVEKEEDGTLVAKLLETMHLTG <---Intron---> ADFTNTFCVLSSFPADLSDSAEFLSR
          /||||//||/|||| ||||||/||| || <   1462bp   > |||||||  || |||/ || |||| |
  Target  RKLGLVQVEQEEDGALVAKLLDTMHKTG                ADFTNTFYELSRFPAEPSDLAEFLPR
          aacgcgcggcgggggcggaccgaacaag                ggtaaattgcactcggctgcggtcca
          gatgttataaaaagcttcattactaac                gcatcactaatggtccaccatcattcg
          gggcctgggggattatgcgtgctgtgt                ctttaccctggcccatgaacgggcgtg
                                                                                
  
  Query   LTSQCASLEELRLAFRPQMDPR <---Intron---> QLSMMLMLAQSNPQLFALIGTQANVTKELERV
          |||||||||||/|||||||||| <   596bp    > ||||||||||||||||||||/|||||||||||
  Target  LTSQCASLEELKLAFRPQMDPR                QLSMMLMLAQSNPQLFALIGSQANVTKELERV
          catctgtcggcacgtcccagcc                cctaacacgctaccctgcagtcgagaagcgcg
          tccagcctaatatctgcatacg                atctttttcacacattcttgcacatcaatagt
          cccgtctgaaggtccacggta                gggcggggtagatagctaccccgatcaggagta
                                                                                
  
  Query   EHQSRLEQLSPSDLQRKNRDHWEAWLQEYR <---Intron---> DRLDKEKEGVGDTAAWQAERVRVM
          | || ||||| //|| || ||| ||||||| <   143bp    >  ||||/||||||||||||||/|/|
  Target  EQQSWLEQLSSAELQSKNTDHWVAWLQEYR                ARLDKDKEGVGDTAAWQAERLRIM
          gccttcgccatggccaaaagctggtccgta                gccgagagggggaggtcggcccaa
          aaacgtaatgccatagaacaagtcgtaaag                cgtaaaaagtgacccgacagtgtt
          aggagaaggcttgggcgcaccggcgaggc                acggcgcaattattttggagcgccg
                                                                                
  
  Query   RANNPKYVLRNYIAQKAIEAAENGDFSE <---Intron---> VRRVLKLLESPYHSE---EEATGPEA
           |||||||||||||| ||||||||||/| <    90bp    > |||/||||||||/ |    ||| |||
  Target  HANNPKYVLRNYIAQNAIEAAENGDFAE                VRRILKLLESPYYIEGETTEATSPEA
          cgaacatgcaatagcagaggggaggtgg                gccacaccgtcttagggaaggaacgg
          acaacaattgaatcaactaccaagatca                tggttattaccaatagaccaccgcac
          tccccgtcggcctagtctgttatattag                ggccgggggttcttaggctgcactga
                                                                                
  
  Query   VARSTEEQSSYSNRPPLWAAELCVTUSS
           ||/| /| |||/|||||||||||||||
  Target  AARTTGDQYSYSSRPPLWAAELCVTUSS
          ggaaaggctttaaaccctgggctgattt
          ccgccgaaacagggcctgccatgtcgcc
          aagcttcgtccccgaccgaaactaaaca
                                   * 