
genewise output
Score 21.02 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000079_2.0  278 LTAISDFYYTVMFRIHAEFQLS-EPPDFPFWF                  
                     LTA   F   V+F +H    LS  PP FP  F                  
                     LTACCLFVACVLFSLHGCVDLSPSPPIFPSTF                  
KE993717.1:subs26058 tagttttggtgtttccgtggttcaccatctat                  
                     tccggtttcgtttctaggtatccgccttccct                  
                     gccctatatcgactcttcatgtattttcccat                  


//
>KE993717.1:subseq(965179,100089).pep
LTACCLFVACVLFSLHGCVDLSPSPPIFPSTF
//
>KE993717.1:subseq(965179,100089).[26058:26153].sp
TTGACCGCCTGCTGTTTATTTGTAGCTTGCGTGTTATTCTCTCTCCATGGTTGCGTAGAT
TTGTCTCCAAGTCCTCCTATTTTCCCCTCCACATTT
//
KE993717.1:subseq(965179,100089)	GeneWise	match	26058	26153	21.02	+	.	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	cds	26058	26153	0.00	+	0	KE993717.1:subseq(965179,100089)-genewise-prediction-1
//

genewise output
Score 572.04 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000079_2.0   59 ARQELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSCSVTQ 
                     A QE+AL+TLG DGLFLF+SLDT+ DM ISPEEF+PI +K+ G       
                     AWQEMALRTLGNDGLFLFTSLDTNMDMQISPEEFRPIVDKIIGKHQTCA 
KE993717.1:sub-56185 gtcgagccacgaggctctatcgaaagacaacggtccaggaaagaccatg 
                     cgaatctgctgaagttttcctacatatatgcaatgcttaattgaaacgc 
                     cggagcgaagctcggctcccgcccgcgacccggcgctccgcatacgcca 


SPP00000079_2.0  108 TGVQWC                          HSSLQP-QLPWLNXSSC 
                        ++C                              +P    W + ++  
                     YFSEFC          S:V[gta]        IVFHKPFDCLWNSQNAH 
KE993717.1:sub-56038 tttgttGGTCTTCC  Intron 1   CAGTAagtcactgtctatcagc 
                     atcatg <1-----[56019:55574]-1>  tttaactagtgacaaca 
                     tcaacc                          ttttactcccgtgatcc 


SPP00000079_2.0  131 LSLLRSTPAASCEEEELPPDPSEETLTIEARFQPLLPETMTKSKDGFLG 
                     +SL+ + P  S  E     DP  E LT+ ARF+PLL ETM+KS+DGFLG 
                     VSLITAGPPPSEYEGTQEADPQGEGLTMLARFEPLLMETMSKSRDGFLG 
KE993717.1:sub-55520 gttaaggccctgtggacgggccgggcaatgctgcccagaaaaacggtcg 
                     tcttccgccccaaagcaacacagagtcttcgtactttactgaggagttg 
                     gcgtcaggctggtaagagccggggcccggtgtggggggcgcgcacacgg 


SPP00000079_2.0  180                        VSRLALSGLRNWTAAASPSAVFATRH 
                                            V +  L+GLR+W  A +PS  F     
                                            VGQSCLAGLRSWKKAETPSQHFGANQ 
KE993717.1:sub-55373 GTGAGCG  Intron 2   CAGggcatcggccataaggacacctggac 
                     <0-----[55373:54851]-0>tgaggtcgtgggaacaccgaatgcaa 
                                            tagcctctgccgggggcatgctcacg 


SPP00000079_2.0  206 FQPFLPPPGQ-ELGEPWWIIPSELSMFTGYLSNNRFYPPPPKGKE     
                     F+ FLPP    ELGE WWI+P++L++FTGYL N+R+YPPPP  KE     
                     FKVFLPPKSDLELGEAWWIVPNDLNLFTGYLPNSRYYPPPPVAKE     
KE993717.1:sub-54772 tagtcccaagcgcgggttagcagcactagtccaacttccccggag     
                     tatttccagatatgacggttcaatattcgatcaggaacccctcaa     
                     cggtgcagccagggacggcgcctgcctcgtgccccccaagttaag     


SPP00000079_2.0  250                        VIIHRLLSMFHPRPFVKTRFAPQGAV 
                                            +II +LLSM+HPRPFVK+RFAPQG+V 
                                            IIIFKLLSMLHPRPFVKSRFAPQGSV 
KE993717.1:sub-54637 GTAATGA  Intron 3   CAGaaataccaaccccctgatctgccgtg 
                     <0-----[54637:53732]-0>ttttattgttacgcttacgtccagct 
                                            cctcgtgcgtcagccggaccccgtcg 


SPP00000079_2.0  276 ACLTAISDFYYTVMF                          IHAEFQLS 
                     AC+ A SD+YY ++F                          +HAEFQL+ 
                     ACIRAQSDMYYDIVF           R:R[agg]       VHAEFQLN 
KE993717.1:sub-53653 gtacgcagattgagtAGGTACGGC  Intron 4   CAGGgcggtcca 
                     cgtgcagataaattt  <2-----[53606:51745]-2> tacatata 
                     gctcagccgtcccgc                          tcggcgcc 


SPP00000079_2.0  300 EPPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNH             
                     EPP FPFWF+PAQFTGH+ +++D++HVR F +FVPN+             
                     EPPAFPFWFTPAQFTGHVTIARDSSHVRAFHMFVPNN             
KE993717.1:sub-51719 gccgtctttacgctagcgaagcgttcgcgtcatgcaa             
                     accctctgtcccatcgatctcgaccatgctatttcaa             
                     ggcccgcgccgggccatgccagccccccaccgtgact             


SPP00000079_2.0  337                           SLNVDMEWLYGASESSNMEVDIG 
                                               SLNVDMEWL+G+ +  NMEVDIG 
                                R:R[cgg]       SLNVDMEWLFGSMDQGNMEVDIG 
KE993717.1:sub-51608 CGGTGAGAG  Intron 5   CAGGtcaggagtctgtagcgaagggag 
                       <2-----[51606:50085]-2> ctatatagttgctaagatatatg 
                                               cgcgcggggtccgtgccgggtta 


SPP00000079_2.0  361 YIPQ                       MELEATGPSVPSVILDEDGSMI 
                     ++P+                       MEL A GPSVP++I DE+G+ I 
                     FMPK                       MELVAEGPSVPALIYDENGNAI 
KE993717.1:sub-50014 tacaGTGTGTT  Intron 6   CAGagcggggctgcgcatggagaga 
                     ttca<0-----[50002:49405]-0>tattcagcctccttaaaagact 
                     cgag                       gggttattagaggtctacccgt 


SPP00000079_2.0  387 DSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEVAMYPFKK         
                     ++  P  EP+QFVFE I+W+ E+S++EA R++EVAMYPFKK         
                     NTSDPDAEPIQFVFENIEWRSEISFQEAYRQMEVAMYPFKK         
KE993717.1:sub-49338 aaagcgggcactgtgaagtctgaatcggtacagggatctaa         
                     acgacacactatttaataggcatgtaacagatatctactaa         
                     cgccgcggccgtgtgctgggagcccgaccaaggccgtacgg         


SPP00000079_2.0  428                        VSYLPFTEAFDRAKAENKLVHSILLW 
                                            + Y PFTEAF++AKAE KLVHSILLW 
                                            IQYHPFTEAFEKAKAEEKLVHSILLW 
KE993717.1:sub-49215 GTAAGCA  Intron 7   TAGactcctaggtgagagggacgctatct 
                     <0-----[49215:48445]-0>taaactcactaacacaaattactttg 
                                            tatttcgactaaagaaaggcccaacg 


SPP00000079_2.0  454 GALDDQSCX                          SGRTLRETVLESSP 
                     GALDDQSCX                          SGRTLRET LES P 
                     GALDDQSCX          G:G[ggt]        SGRTLRETALESLP 
KE993717.1:sub-48366 ggtggctttGGTTGGTG  Intron 8   CAGGTtgcaccgagcgatc 
                     gctaaacgg <1-----[48338:47859]-1>  cggctgacctagtc 
                     gggtcacca                          ggaccggtcggtgc 


SPP00000079_2.0  478 ILTLLNESFISTWSLVKELEELQ                       NNQ 
                     +L LL+E+FIS+WSLVK+LE+L+                         + 
                     VLALLSENFISSWSLVKDLEDLK                       KQE 
KE993717.1:sub-47814 gcgccagataaattcgagcggcaGTGCGAC  Intron 9   CAGacg 
                     ttcttgaattgggcttaataata<0-----[47745:46984]-0>aaa 
                     cccggcgcccccgggcgcggcgg                       ggg 


SPP00000079_2.0  504 ENSSHQKLAGLHLEKYSFPVEMMICLPNGTV                   
                     E + H K A LHL KY+FPVEMMI LPNGTV                   
                     EQAEHAKWATLHLAKYTFPVEMMIALPNGTV                   
KE993717.1:sub-46974 gcggcgatgacccgatatcggaaagccagag                   
                     aacaacagcctatcaactctatttctcagct                   
                     gaggtgaggggccaacacaggggtcgacgag                   


SPP00000079_2.0  535                        VHHINANYFLDITSVKPEEIESNLFS 
                                            VH INAN FLD T+VK E++  +L   
                                            VHCINANDFLDATAVKAEDLTPDL-- 
KE993717.1:sub-46881 GTAGGTC  Intron 10  CAGgctaagagttggaggagggcacgc   
                     <0-----[46881:46402]-0>tagtacaattaccctacaatccat   
                                            ctcctctctgttcaaaagcgagcc   


SPP00000079_2.0  561 FSSTFEDPSTATYMQFLKEGLRRGLPLLQ                     
                       + F DP++ TY++FLKEGL++    LQ                     
                     -PAEFLDPTSTTYLKFLKEGLQKAQTYLQ                     
KE993717.1:sub-46329  cggtcgcaaaatcatcaggccagcatcc                     
                      ccattaccgccatattaagtaacacata                     
                      acgcgcagcgccggccgacgggcaccgg                     


//
Making a V in phase 1 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
>KE993717.1:subseq(965179,100089).pep
AWQEMALRTLGNDGLFLFTSLDTNMDMQISPEEFRPIVDKIIGKHQTCAYFSEFCVIVFH
KPFDCLWNSQNAHVSLITAGPPPSEYEGTQEADPQGEGLTMLARFEPLLMETMSKSRDGF
LGVGQSCLAGLRSWKKAETPSQHFGANQFKVFLPPKSDLELGEAWWIVPNDLNLFTGYLP
NSRYYPPPPVAKEIIIFKLLSMLHPRPFVKSRFAPQGSVACIRAQSDMYYDIVFRVHAEF
QLNEPPAFPFWFTPAQFTGHVTIARDSSHVRAFHMFVPNNRSLNVDMEWLFGSMDQGNME
VDIGFMPKMELVAEGPSVPALIYDENGNAINTSDPDAEPIQFVFENIEWRSEISFQEAYR
QMEVAMYPFKKIQYHPFTEAFEKAKAEEKLVHSILLWGALDDQSCXGSGRTLRETALESL
PVLALLSENFISSWSLVKDLEDLKKQEEQAEHAKWATLHLAKYTFPVEMMIALPNGTVVH
CINANDFLDATAVKAEDLTPDLPAEFLDPTSTTYLKFLKEGLQKAQTYLQ
//
>KE993717.1:subseq(965179,100089).[56185:46244].sp
GCCTGGCAGGAAATGGCCCTGCGAACACTGGGCAATGACGGGCTGTTCCTTTTCACCTCC
CTGGACACCAACATGGACATGCAAATCAGCCCCGAGGAGTTCCGGCCCATTGTCGACAAG
ATCATAGGTAAACACCAGACCTGCGCATATTTCTCAGAATTCTGCGTAATTGTTTTTCAT
AAACCCTTTGACTGCCTCTGGAATTCGCAAAATGCCCACGTGTCCTTGATTACCGCAGGG
CCGCCCCCTTCGGAGTATGAAGGAACGCAAGAGGCCGACCCGCAGGGGGAGGGCCTCACC
ATGTTGGCTCGGTTTGAGCCGCTGCTGATGGAGACCATGAGCAAGAGCCGAGACGGATTC
CTGGGGGTTGGACAGAGCTGCCTTGCCGGTCTGCGCAGCTGGAAGAAGGCGGAGACCCCA
AGTCAGCACTTTGGCGCAAACCAGTTCAAGGTGTTTCTGCCCCCAAAGAGCGACCTAGAG
CTGGGGGAAGCCTGGTGGATCGTGCCCAACGATCTGAACCTCTTTACCGGGTATCTGCCC
AACAGCCGCTACTACCCACCACCGCCTGTTGCAAAAGAGATCATCATTTTCAAGCTTCTG
AGCATGCTTCACCCACGGCCCTTCGTGAAGTCACGCTTCGCCCCCCAGGGTTCCGTGGCG
TGCATTCGCGCACAGAGCGACATGTATTACGACATCGTGTTCAGGGTTCACGCGGAGTTC
CAGCTCAACGAGCCGCCCGCCTTCCCGTTCTGGTTCACCCCGGCGCAGTTCACCGGACAT
GTGACCATCGCACGGGACTCCTCCCACGTCCGCGCATTCCACATGTTTGTGCCAAACAAT
CGGTCCCTGAACGTGGACATGGAGTGGCTGTTTGGCTCCATGGATCAGGGCAACATGGAG
GTGGATATTGGATTCATGCCAAAGATGGAGCTGGTTGCTGAAGGTCCTTCAGTGCCAGCG
CTGATTTACGATGAAAACGGCAACGCGATTAACACGAGCGACCCGGACGCGGAGCCCATC
CAGTTTGTGTTTGAGAACATTGAGTGGCGGTCAGAGATCAGCTTCCAGGAAGCCTACAGA
CAAATGGAGGTCGCCATGTATCCATTCAAGAAGATTCAATATCATCCTTTCACGGAAGCC
TTTGAAAAAGCAAAGGCAGAAGAAAAGCTGGTCCACTCCATATTACTCTGGGGGGCGTTG
GATGACCAATCCTGCTGAGGTTCGGGGCGAACCCTCCGGGAGACTGCCCTGGAGAGTTTG
CCCGTCCTCGCCCTGCTGAGCGAGAACTTCATCAGCAGCTGGTCGCTGGTCAAGGACCTG
GAGGACCTGAAGAAGCAGGAGGAGCAAGCGGAGCATGCGAAATGGGCGACGCTGCACCTC
GCAAAATACACATTCCCAGTGGAGATGATGATTGCCCTGCCAAACGGGACAGTGGTCCAT
TGCATCAATGCCAATGACTTTTTGGATGCTACCGCAGTAAAAGCAGAGGACCTGACACCG
GACCTCCCAGCCGAGTTCCTGGACCCAACGAGCACGACCTACCTGAAGTTCCTCAAGGAA
GGCCTGCAGAAGGCCCAAACCTACCTGCAG
//
KE993717.1:subseq(965179,100089)	GeneWise	match	56185	46246	574.04	-	.	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	cds	56185	56020	0.00	-	0	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	intron	56019	55574	0.00	-	.	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	cds	55573	55374	0.00	-	2	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	intron	55373	54851	0.00	-	.	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	cds	54850	54638	0.00	-	0	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	intron	54637	53732	0.00	-	.	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	cds	53731	53607	0.00	-	0	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	intron	53606	51745	0.00	-	.	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	cds	51744	51607	0.00	-	1	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	intron	51606	50085	0.00	-	.	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	cds	50084	50003	0.00	-	1	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	intron	50002	49405	0.00	-	.	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	cds	49404	49216	0.00	-	0	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	intron	49215	48445	0.00	-	.	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	cds	48444	48339	0.00	-	0	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	intron	48338	47859	0.00	-	.	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	cds	47858	47746	0.00	-	2	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	intron	47745	46984	0.00	-	.	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	cds	46983	46882	0.00	-	0	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	intron	46881	46402	0.00	-	.	KE993717.1:subseq(965179,100089)-genewise-prediction-1
KE993717.1:subseq(965179,100089)	GeneWise	cds	46401	46246	0.00	-	0	KE993717.1:subseq(965179,100089)-genewise-prediction-1
//
