
genewise output
Score 566.64 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002945_2.0    1 MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEK            
                     MN  + A  E +V  +Y RQG EARR+HE ++R+LLEK            
                     MNEVNAALCEGVVPASYARQGHEARRAHEKVVRVLLEK            
KE993775.1:subs44279 aaggaggctggggcgttgccgcggccgcgaggcgccga            
                     taatacctgagttcccacgagaacggcaaattgtttaa            
                     gcggcgagcgtgggaacacgccgggcgcggcgcggtgg            


SPP00002945_2.0   39                        GKCPENGWDESTLELFLHELAIMDSN 
                                             K PE GW++ T+EL+L EL+IMDSN 
                                            RKLPEEGWEDQTIELLLQELSIMDSN 
KE993775.1:subs44393 GTGTGGC  Intron 1   CAGcaccgggtggcaagccccgctaagta 
                     <0-----[44393:44915]-0>gatcaaggaaactatttaatcttaca 
                                            tggagacggcggcgggggggccgcgc 


SPP00002945_2.0   65 NFLGNCGVGEREGRVASALVARRHY                         
                     NFLGNCGVGEREGRV  ALVA+RHY                         
                     NFLGNCGVGEREGRVVCALVAKRHY           R:R[agg]      
KE993775.1:subs44994 attgatggggcggcggtgcggaactAGGTGAACC  Intron 2      
                     attgaggtgagaggttgcttcagaa  <2-----[45071:45945]   
                     ccgaccctggtgctgtttcgcaatc                         


SPP00002945_2.0   90     FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLA       
                         +IHGIGRSGDI+AVQPKAAGSSLL+K+ NS+ LD+I+ +       
                         MIHGIGRSGDITAVQPKAAGSSLLSKLANSVALDVIRTS       
KE993775.1:subs45943 AAGGaacgagatggaaggccagggtaccaacgatggcggaaaa       
                     -2> ttagtggcgatcctacaccgcgttgatcactctattgcg       
                         gctccggatccatggcaaccattccagacaccgcgagcc       


SPP00002945_2.0  130                           VHTVANCFVVPMATGMSLTLCFL 
                                               V + + CFVVP+ATGM+L+L F  
                               G:G[ggt]        VRSASACFVVPVATGMALSLSFT 
KE993775.1:subs46064 GGTGAGTG  Intron 3   TAGGTgcagagttggcggagagctcata 
                      <1-----[46065:48382]-1>  tggcgcgtttctccgtctctgtc 
                                               gctgcaccgggtcgcggcggcca 


SPP00002945_2.0  154 TLRHKRPKAKYIIWPRIDQKSCFKSMITA                     
                      LR  R  A+Y++WPRIDQKSC+K+M+ A                     
                     ALRSHRRSARYVLWPRIDQKSCYKAMLCA                     
KE993775.1:subs48454 gcctccctgctgctccagcatttagactg                     
                     ctgcaggccgattgcgtaaacgaacttgc                     
                     ggggcccctccgcgacccggcccgcggtc                     


SPP00002945_2.0  183                           FEPVVIENVLEGDELRTDLKAVE 
                                               +EPVV+EN+LEGDELRTDL A+E 
                               G:G[ggt]        LEPVVLENLLEGDELRTDLGALE 
KE993775.1:subs48541 GGTGAGGG  Intron 4   GAGGTcgcggcgaccggggccagcggcg 
                      <1-----[48542:49186]-1>  tactttaattagaatgcatgcta 
                                               ggcggggcggggcggcaccgaag 


SPP00002945_2.0  207 AKVQELGPDCILCIHSTTSCFAPRVPD                       
                     A V ELG + ILC+HSTTSCFAPR PD                       
                     AAVVELGAENILCVHSTTSCFAPRTPD           R:R[cgt]    
KE993775.1:subs49258 gggggtgggaactgctaatttgccacgCGGTACGTA  Intron 5    
                     ccttatgcaattgtaccccgtccgcca  <2-----[49341:49998] 
                     gcgggagagctgtcccccccccactcc                       


SPP00002945_2.0  234     LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ            
                         LEE+A IC  + IPH+VNNAYGVQSSKCMHLIQQ            
                         LEEIAEICKRHGIPHVVNNAYGVQSSKCMHLIQQ            
KE993775.1:subs49996 CAGTtggaggataccgaccggaagtggcaaataccacc            
                     -2> taatcatgagagtcattaacagtaggagtattaa            
                         ggactgccgacacgcccccgcaggccgtgcccgg            


SPP00002945_2.0  269                        GARVGRIDAFVQSLDKNFMVPVGGAI 
                                             ARVGR+D FVQSLDKNFMVPVGGAI 
                                            AARVGRVDVFVQSLDKNFMVPVGGAI 
KE993775.1:subs50102 GTGACTC  Intron 6   CAGggcggcgggtgcacgaatagcgggga 
                     <0-----[50102:50819]-0>ccgtggtatttagtaaatttctggct 
                                            tgttcggcgtggtgtgccggggaccc 


SPP00002945_2.0  295 IAGFNDSFIQEISKMYP                          RASASP 
                     IAGFN  +I +I K YP                          RASA+P 
                     IAGFNRDLIADIGKTYP          G:G[ggc]        RASAAP 
KE993775.1:subs50898 aggtacgcaggagaatcGGTACGCA  Intron 7   CAGGCcgtggc 
                     tcgtagattcatgacac <1-----[50950:52481]-1>  gccccc 
                     ctccccccctcccacca                          tgtccg 


SPP00002945_2.0  319 SLDVLITLLSLGSNGYKKLLKERK                       EM 
                     S+D L+T+LSLG  GYK+LL ERK                        M 
                     SMDFLMTMLSLGQRGYKRLLAERK                       AM 
KE993775.1:subs52502 tagtcaaactcgccgtacccggcaGTGCGCC  Intron 8   TAGga 
                     ctatttcttctgaggaagttcaga<0-----[52574:54250]-0>ct 
                     ggcccgcggcgcgtacacccggcg                       ag 


SPP00002945_2.0  345 FSYLSNQIKKLSEAYNERLLHTPHNPISL                     
                     ++YL N++K L+    E+LLHTPHNPISL                     
                     YTYLENKMKVLALENGEKLLHTPHNPISL                     
KE993775.1:subs54257 tatcgaaaagcgcgaggacccaccacatc                     
                     acataaatattctaagaattaccaactct                     
                     cacggcggaggcggcaaggacagcccacg                     


SPP00002945_2.0  374                           MTLKTLDEHRDKAVTQLGSMLFT 
                                               M++ +L       VTQLGSMLFT 
                               A:A[gcg]        MSMSSLP---PAVVTQLGSMLFT 
KE993775.1:subs54344 GGTACGCA  Intron 9   TAGCGataatcc   cgggaccgtacta 
                      <1-----[54345:54876]-1>  tctgctc   ccttcatgctttc 
                                               gcgccat   attggggccggca 


SPP00002945_2.0  398 RQVSGA                          VVPLGSM-QTVSGYTFR 
                     RQVSGA                          VVPLG + QTV G  FR 
                     RQVSGA           R:R[aga]       VVPLGGVTQTVGGREFR 
KE993775.1:subs54939 acgtggAGGTTGGTG  Intron 10  CAGAggccgggacagggcgtc 
                     gatcgc  <2-----[54959:55420]-2> ttctggtcactgggatg 
                     aagccc                          gcggcgggggtcacgcc 


SPP00002945_2.0  421 GFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKES 
                     GFMSH+  YP AYLNAA+AIGM + DV  F  RL RCL A+R++  K+S 
                     GFMSHSPCYPVAYLNAAAAIGMTQADVGAFTSRLSRCLDALRRDACKKS 
KE993775.1:subs55473 gtatctcttcggtcaggggagaacgggggtatcctctcggcccggtaaa 
                     gttcaccgactcatacccctgtcacatgctccgtcggtactggacgaag 
                     ccggcgtccccccccctacccggggcgcccggcgcccccggaccgcggc 


//
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a A in phase 1 intron
Making a R in phase 2 intron
>KE993775.1:subseq(1043321,100101).pep
MNEVNAALCEGVVPASYARQGHEARRAHEKVVRVLLEKRKLPEEGWEDQTIELLLQELSI
MDSNNFLGNCGVGEREGRVVCALVAKRHYRMIHGIGRSGDITAVQPKAAGSSLLSKLANS
VALDVIRTSGVRSASACFVVPVATGMALSLSFTALRSHRRSARYVLWPRIDQKSCYKAML
CAGLEPVVLENLLEGDELRTDLGALEAAVVELGAENILCVHSTTSCFAPRTPDRLEEIAE
ICKRHGIPHVVNNAYGVQSSKCMHLIQQAARVGRVDVFVQSLDKNFMVPVGGAIIAGFNR
DLIADIGKTYPGRASAAPSMDFLMTMLSLGQRGYKRLLAERKAMYTYLENKMKVLALENG
EKLLHTPHNPISLAMSMSSLPPAVVTQLGSMLFTRQVSGARVVPLGGVTQTVGGREFRGF
MSHSPCYPVAYLNAAAAIGMTQADVGAFTSRLSRCLDALRRDACKKS
//
>KE993775.1:subseq(1043321,100101).[44279:55619].sp
ATGAACGAGGTGAACGCGGCACTGTGCGAGGGTGTGGTGCCGGCATCATACGCACGCCAG
GGCCACGAGGCGCGGCGCGCGCACGAGAAGGTCGTGCGCGTGCTGCTTGAGAAGCGTAAG
CTGCCAGAGGAAGGCTGGGAGGACCAGACGATCGAGCTGCTGCTGCAGGAGCTGTCCATC
ATGGACTCGAACAACTTCTTGGGAAACTGCGGCGTTGGGGAGCGTGAGGGCCGTGTGGTT
TGTGCTCTCGTGGCCAAAAGACATTACAGGATGATCCATGGCATCGGGAGGTCAGGTGAC
ATCACAGCTGTGCAGCCCAAAGCAGCCGGCTCAAGTCTTCTCAGCAAACTGGCAAACTCA
GTCGCCCTGGACGTGATAAGGACCAGCGGTGTGCGCAGTGCGAGCGCATGCTTCGTGGTG
CCGGTTGCCACGGGCATGGCGCTCTCGCTGAGCTTCACAGCGCTGCGGTCGCACCGCCGC
TCCGCTCGCTACGTGCTCTGGCCACGCATCGACCAGAAGTCCTGCTACAAGGCCATGCTG
TGTGCCGGTCTGGAGCCCGTGGTGCTGGAGAACCTGCTGGAGGGGGACGAGCTGCGCACA
GACCTCGGGGCACTAGAGGCGGCCGTGGTGGAGTTAGGGGCAGAGAACATTCTGTGTGTC
CACTCCACCACCTCCTGCTTCGCCCCACGCACTCCCGACCGTTTGGAGGAAATCGCTGAG
ATCTGCAAGCGACACGGAATCCCGCACGTCGTCAACAACGCGTACGGAGTGCAGAGCAGC
AAGTGTATGCACCTCATCCAGCAGGCTGCGCGTGTTGGCCGGGTGGACGTGTTTGTGCAG
AGTCTGGATAAGAACTTCATGGTGCCGGTGGGAGGCGCCATCATCGCTGGCTTCAACCGC
GACCTCATCGCTGACATCGGCAAAACCTACCCAGGCCGTGCGTCTGCCGCCCCGTCGATG
GACTTCCTCATGACCATGCTGTCCCTGGGCCAGCGTGGATACAAACGCCTCCTCGCGGAG
CGCAAGGCAATGTACACATACCTGGAGAACAAGATGAAAGTGCTGGCCCTGGAGAACGGA
GAAAAGCTGCTACACACACCGCACAACCCCATATCCCTGGCGATGTCCATGAGCTCCCTA
CCTCCAGCTGTTGTGACGCAGCTGGGCTCCATGCTGTTCACAAGACAAGTGTCCGGCGCC
AGAGTGGTCCCGCTGGGCGGGGTGACGCAGACGGTTGGCGGACGCGAGTTCCGCGGCTTC
ATGTCGCACTCGCCTTGCTACCCCGTCGCCTACCTCAACGCCGCTGCAGCCATCGGCATG
ACGCAGGCGGACGTGGGCGCCTTCACGTCGCGCCTGTCCCGCTGCCTCGACGCGCTGCGA
CGCGACGCGTGCAAGAAGAGC
//
KE993775.1:subseq(1043321,100101)	GeneWise	match	44279	55619	568.64	+	.	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	cds	44279	44392	0.00	+	0	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	intron	44393	44915	0.00	+	.	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	cds	44916	45070	0.00	+	0	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	intron	45071	45945	0.00	+	.	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	cds	45946	46064	0.00	+	1	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	intron	46065	48382	0.00	+	.	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	cds	48383	48541	0.00	+	2	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	intron	48542	49186	0.00	+	.	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	cds	49187	49340	0.00	+	2	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	intron	49341	49998	0.00	+	.	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	cds	49999	50101	0.00	+	1	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	intron	50102	50819	0.00	+	.	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	cds	50820	50949	0.00	+	0	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	intron	50950	52481	0.00	+	.	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	cds	52482	52573	0.00	+	2	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	intron	52574	54250	0.00	+	.	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	cds	54251	54344	0.00	+	0	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	intron	54345	54876	0.00	+	.	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	cds	54877	54958	0.00	+	2	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	intron	54959	55420	0.00	+	.	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	cds	55421	55619	0.00	+	1	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
//

genewise output
Score 22.27 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002945_2.0  290 VGGAIIAGFNDSFI                                    
                     VG  ++AGFND FI                                    
                     VGCRVMAGFNDKFI                                    
KE993775.1:sub-96974 ggtcgaggtagata                                    
                     tgggttcgtaaatt                                    
                     tctggggttccata                                    


//
>KE993775.1:subseq(1043321,100101).pep
VGCRVMAGFNDKFI
//
>KE993775.1:subseq(1043321,100101).[96974:96931].sp
GTTGGCTGTCGGGTGATGGCGGGTTTTAACGACAAATTTATA
//
KE993775.1:subseq(1043321,100101)	GeneWise	match	96974	96933	22.27	-	.	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
KE993775.1:subseq(1043321,100101)	GeneWise	cds	96974	96933	0.00	-	0	KE993775.1:subseq(1043321,100101)-genewise-prediction-1
//
