
genewise output
Score 28.72 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002933_2.0  740 STSTTTLASTMTRTVPATTRAPGTTVHRSTYQNHSTETPSLTAAVPSSV 
                     + +TTT+ +T T TV ATT    TTV+ +T  N +T T + T    ++  
                     NATTTTVNATTTTTVNATT----TTVNTTTTVNATTTTVNTTTTTVNAT 
KE993784.1:subs29167 agaaaagagaaaaagagaa    aagaaaaagagaaaagaaaaaagaga 
                     accccctacccccctaccc    cctacccctaccccctaccccctacc 
                     cccccttcccccccttccc    ccttccctttccccttcccccttccc 


SPP00002933_2.0  789 SVPRAPSISPSTLSPATS-NHSQH                          
                     +     + + +T++  T+ NH  H                          
                     TTTTTVNATTTTVNATTTVNHHHH                          
KE993784.1:subs29302 aaaaagagaaaagagaaagacccc                          
                     ccccctaccccctacccctaaaaa                          
                     cccccttcccccttcccctccccc                          


//
>KE993784.1:subseq(789625,100212).pep
NATTTTVNATTTTTVNATTTTVNTTTTVNATTTTVNTTTTTVNATTTTTTVNATTTTVNA
TTTVNHHHH
//
>KE993784.1:subseq(789625,100212).[29167:29373].sp
AACGCCACCACCACCACTGTTAACGCCACCACCACCACCACCGTTAATGCCACCACCACC
ACCGTTAATACCACCACCACTGTTAATGCCACCACCACCACTGTTAACACCACCACCACC
ACTGTTAACGCCACCACCACCACCACCACCGTTAATGCCACCACCACCACCGTTAATGCC
ACCACCACCGTTAACCACCACCACCAC
//
KE993784.1:subseq(789625,100212)	GeneWise	match	29167	29373	31.71	+	.	KE993784.1:subseq(789625,100212)-genewise-prediction-1
KE993784.1:subseq(789625,100212)	GeneWise	cds	29167	29373	0.00	+	0	KE993784.1:subseq(789625,100212)-genewise-prediction-1
//

genewise output
Score 387.31 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002933_2.0   47 CEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC               
                     C   +F C + RC+P  +RCD   DC D SDE DC               
                     CGTHEFACADGRCLPGAFRCDHRQDCGDGSDEADC               
KE993784.1:sub-57233 tgacgtgtgggctccggtctgcccgtgggaggggt               
                     ggcaatcgcagggtcgctggaagaaggaggaacag               
                     tcgcgcccccggccggcccccccgcccccccgccc               


SPP00002933_2.0   82                           KKTCADSDFTCDNGHCIHERWKC 
                                                 TC      C +G C+   W C 
                               P:A[gcg]        YGTCGPEQVVCPSGRCVPRSWLC 
KE993784.1:sub-57128 GGTGAGAG  Intron 1   CAGCGtgatgcgcggtcagctgccttct 
                      <1-----[57127:56124]-1>  agcggcaattgcggggtcgcgtg 
                                               cggtggggggcgcggcggccgcc 


SPP00002933_2.0  106 DGEEECPDGSDESEA                          CTKQVCPA 
                     DG+++C D SDES                                  P  
                     DGQDDCGDSSDESAC          T:G[gga]        ICVGGFPV 
KE993784.1:sub-56052 ggcggtggtaggagtGGTGAGGA  Intron 2   TAGGAatgggtcg 
                     agaaaggacgaagcg <1-----[56006:45674]-1>  tgtggtct 
                     ccgccccccccgcct                          ctgtctta 


SPP00002933_2.0  130 EKLSCGPT                          HKCVPASWRCDGEKD 
                     +++S G                              C+PA WRCDG  D 
                     DRMSQGSV           S:S[agc]       GSCLPADWRCDGRDD 
KE993784.1:sub-45647 gaatcgtgAGGTCTGAC  Intron 3   CAGCgatccggtctggcgg 
                     agtcagct  <2-----[45621:34808]-2> gggtccagggaggaa 
                     cagcaacc                          gccccgcgcccggcc 


SPP00002933_2.0  154 CEGGADEAGC-----ATLCAPHEFQCGNRSCLAAVFVCDGDDDCGDGSD 
                     C  G+DE  C        C    F C N  C+ A +VCD D+DCGD SD 
                     CGDGSDELDCPSPPGTASCPDGHFACLNGQCVPAAWVCDSDNDCGDASD 
KE993784.1:sub-34761 tgggaggcgtctccgagttcggctgtcagctgcggtgtgtgagtgggtg 
                     ggaggaatagccccgcccgcagatcgtagagtcccgtgacaaaggacca 
                     cgcgctggcccgggggcgcgcgccgcccggcgcccgtcccccccccccc 


SPP00002933_2.0  198 ERGC                          -ADPA-CGPREFRCGGDGG 
                     ER C                            +P  C   EF+C  DG  
                     ERNC          -:T[acg]        TREPGRCLRAEFQCRADG- 
KE993784.1:sub-34614 gcatAGTGAGTG  Intron 4   CAGCGacgcgctccggtctcggg  
                     agag <1-----[34601:32816]-1>  cgacgggtgcataggcag  
                     gccc                          gcggcgccccgcgcggcc  


SPP00002933_2.0  219 GACIPERWVCDRQFDCEDRSDEAAELCGRPGPG-----ATSAPAACATA 
                       C+P  W CD   DC+D SDE    C  P P      A + PA      
                     -FCLPGEWECDGHADCDDDSDEHVG-CPPPPPAPRHPRAATPPAT!PAR 
KE993784.1:sub-32759  ttccggtgtggcggtgggtggcgg tcccccgcccccggaccga5cgc 
                      tgtcgagagagacagaaacaaatg gcccccccgacgccccccc ccg 
                      cccgcgggccgcccccccgcgccc ccgcgtctgttgggcgggg cgg 


SPP00002933_2.0  263 SQFACRSGECVHLGWRCDGDRDCKDKSDEADCPLG--TCRGD-EFQC-G 
                     + F C  G CV   WRCDGDRDC+D SDE  CP    TC  +  + C G 
                     ASFRCDDGRCVSAAWRCDGDRDCRDGSDERGCPAPAFTCPAERQWACPG 
KE993784.1:sub-32616 gttctgggctgtggtctgggcgtcggaggcgtcgcgtatcggcctgtcg 
                     cctggaagggtcccgggagagaggaggaagggcccctcgccagagcgcg 
                     cgcccccggcggcggccccccccccgccgccccgggcccccgcggcccg 


SPP00002933_2.0  308 DGTCVLAIKHCNQEQDCPDGSDEAGCLQ                      
                        CV   + C+ ++DCPDG+DE+  L                       
                     QRVCVAHERLCDGKEDCPDGADESP-LC          G:N[aac]    
KE993784.1:sub-32469 ccgtggcgcctggaggtcgggggtc ctAGTGAGTG  Intron 5    
                     agtgtcaagtgagaaagcagcaacc tg <1-----[32387:31547] 
                     gggcggcgggcccggccccgccgcg gc                      


SPP00002933_2.0  336      LNECLHNNGGCSHICTDLKIGFECTCPAGFQLLDQ-KTCGDIDE 
                           ++C  ++GGCS +C    +G +CTC  G++LLD  KTC D DE 
                          RDDCAVSSGGCSDVCVQGPFGAQCTCAPGLRLLDDGKTCMDEDE 
KE993784.1:sub-31549 CAGACcggtggatggttggtgcgctggctatgcgccccgggaatagggg 
                     -1>  gaagctgcgggcatgtagctgcagcgccgtgttaagacgtaaaa 
                          cccccgcccccgcccggcgccggcccggcgcgccccggcgcgcg 


SPP00002933_2.0  380 CKDPDACSQICVNYKGYFKCECYPGYEMDLLTKNCKAA            
                     C  P ACSQ C+N +  F+C C PGY +    ++CKA             
                     CATPGACSQRCINRRRSFRCHCEPGYVLQPDGRSCKAT            
KE993784.1:sub-31412 tgacggtacctaaccattctctgcgtgcccggcttaga            
                     gcccgcggaggtagggctggagacgattacaggcgacc            
                     cggcccccgccccgcggcccccggcccggccccccgcg            


SPP00002933_2.0  418                           GKSPSLIFTNRHEVRRIDL--VK 
                                                    L+ + RH V  ++L     
                               A:G[ggt]        PGPALLLVSTRHAVLELELGSAA 
KE993784.1:sub-31298 GGTGAGCA  Intron 6   CAGGTcgcgcccgtaccggcgtgcgtgg 
                      <1-----[31297:29824]-1>  cgccttttccgacttatatgccc 
                                               cgggggggcggcgggggggtggg 


SPP00002933_2.0  440 RNYSRLIPMLKNVVALDVEVATNRIYWCDLSYRKIYSAYMDKASDPKEQ 
                          L+     +V LDV  A+ R++W D    +++S+ + + +      
                     PTLQTLVDGAAGLVGLDVHWASGRLFWADSVAGQLWSSSLSRHN----R 
KE993784.1:sub-29752 caccacggggggcggcggctgtgccttggtgggcctattctaca    c 
                     cctacttagccgttgtatagccggttgcactcgatggcctcgaa    g 
                     gggggggccgccgccgcccgcggtccgccgccggggccgggacc    c 


SPP00002933_2.0  489 EV                       LIDEQLHSPEGLAVDWVHKHIYWT 
                      +                       ++   +   EG+AVDWV  ++YW  
                     TL                       VLGGGVVGVEGVAVDWVAGNLYWA 
KE993784.1:sub-29617 acGTGCCGC  Intron 7   CAGgcgggggggggggggtgggacttg 
                     ct<0-----[29611:29051]-0>ttgggttgtagtctagtcgatagc 
                     gg                       gggcaggcggtgcgcggatcgcgg 


SPP00002933_2.0  515 DSGNKTISVATVDGGRRRTLFSRNLSEPRAIAVDPLR             
                     DS  +++ VA +DG  R TL+S N++ PR + +DP               
                     DSVLESLQVARLDGTHRATLLSDNVTSPRGLVLDPRN             
KE993784.1:sub-28978 gagcgtccggccggaccgaccagagaaccgcgcgcca             
                     agttactatcgtagcagccttgaatcgcggtttacga             
                     ccgggggggggcccccagggcccccgcggccgccggc             


SPP00002933_2.0  552                           -GFMYWSDWGDQAKIEKSGLNGV 
                                                 +++WSDWG Q  IE++ ++G  
                                -:Q[cag]       SRLVFWSDWGRQPSIERASMDGR 
KE993784.1:sub-28867 CAGTGAGAT  Intron 8   CAGGtccgtttgtgcccaagcgaaggc 
                       <2-----[28865:28747]-2> cgtttgcagggacgtagcgtagg 
                                               cctgcggcgctggccgcccgccc 


SPP00002933_2.0  574 DRQTLVSDNIEWPNGITLDLLSQRLYWVDSKLHQLSSIDFSGGNRKTLI 
                      R+ LVS  + WPNG+ LD  +  LY+ D+ L  L S DF+G +R+ ++ 
                     FRRVLVSHKLYWPNGLALDYATDTLYFADAYLDSLDSCDFNGEHRRQIL 
KE993784.1:sub-28676 tccgcgtcacttcagcgcgtgagacttgggtcgtcgttgtaggccccac 
                     tggtttcaatagcagtctaaccactatcacatactacgatagaaggatt 
                     cccgcggcgccgccgggccccgcgcccccccccgccgcccccgccggcc 


SPP00002933_2.0  623 SSTD                       FLSHPFGIAVFEDKVFWTDLEN 
                     +                          +L HP  +AVFED V+WT+    
                     AGDH                       LLQHPHALAVFEDWVYWTERHT 
KE993784.1:sub-28529 gggcGTGAGTC  Intron 9   CAGccccccgcggtggtgttagcca 
                     cgaa<0-----[28517:28143]-0>ttaacactcttaagtagcagac 
                     cgcc                       gggcgttgggcgcggcggggcg 


SPP00002933_2.0  649 EAIFSANRLNGLEISILAENLNNPHDIVIFHELKQPR             
                       +  ANR +G   S++ E L  P   V+ H ++QP              
                     GRVVRANRWHGTNTSVVLEGLEQPLAAVVVHPVRQPP             
KE993784.1:sub-28076 gcggcgactcgaaaaggcggcgcccgggggccgcccc             
                     ggttgcaggagcacgtttagtaactcctttactgacc             
                     tcggccccgccccccccgggggggggcgagcacggcg             


SPP00002933_2.0  686                           ---APDACELS-VQPNGGCEYLC 
                                                    + C      PNGGCE LC 
                               -:D[gac]        SAGGTNGCSGGGASPNGGCEQLC 
KE993784.1:sub-27965 GGTGAGCC  Intron 10  CAGACtgggaagtaggggtcaggtgcct 
                      <1-----[27964:21994]-1>  ccggcaggggggcccagggaatg 
                                               ggccccccccccccgccccgggc 


SPP00002933_2.0  705 LPAP                                              
                     LP P                                              
                     LPVP                                              
KE993784.1:sub-21922 ccgc                                              
                     tctc                                              
                     gcgg                                              


//
Making a A in phase 1 intron
Making a G in phase 1 intron
Making a S in phase 2 intron
Making a T in phase 1 intron
Making a N in phase 1 intron
Making a G in phase 1 intron
Making a Q in phase 2 intron
Making a D in phase 1 intron
>KE993784.1:subseq(789625,100212).pep
CGTHEFACADGRCLPGAFRCDHRQDCGDGSDEADCAYGTCGPEQVVCPSGRCVPRSWLCD
GQDDCGDSSDESACGICVGGFPVDRMSQGSVSGSCLPADWRCDGRDDCGDGSDELDCPSP
PGTASCPDGHFACLNGQCVPAAWVCDSDNDCGDASDERNCTTREPGRCLRAEFQCRADGF
CLPGEWECDGHADCDDDSDEHVGCPPPPPAPRHPRAATPPATXPARASFRCDDGRCVSAA
WRCDGDRDCRDGSDERGCPAPAFTCPAERQWACPGQRVCVAHERLCDGKEDCPDGADESP
LCNRDDCAVSSGGCSDVCVQGPFGAQCTCAPGLRLLDDGKTCMDEDECATPGACSQRCIN
RRRSFRCHCEPGYVLQPDGRSCKATGPGPALLLVSTRHAVLELELGSAAPTLQTLVDGAA
GLVGLDVHWASGRLFWADSVAGQLWSSSLSRHNRTLVLGGGVVGVEGVAVDWVAGNLYWA
DSVLESLQVARLDGTHRATLLSDNVTSPRGLVLDPRNQSRLVFWSDWGRQPSIERASMDG
RFRRVLVSHKLYWPNGLALDYATDTLYFADAYLDSLDSCDFNGEHRRQILAGDHLLQHPH
ALAVFEDWVYWTERHTGRVVRANRWHGTNTSVVLEGLEQPLAAVVVHPVRQPPDSAGGTN
GCSGGGASPNGGCEQLCLPVP
//
>KE993784.1:subseq(789625,100212).[57233:32629].sp
TGTGGCACGCACGAGTTCGCCTGCGCCGACGGGCGGTGCCTCCCGGGGGCCTTCCGCTGC
GACCACCGCCAGGACTGCGGCGACGGCAGCGACGAGGCCGACTGCGCGTACGGGACGTGT
GGGCCGGAGCAGGTGGTGTGCCCGAGCGGGCGGTGCGTGCCGCGCTCCTGGCTCTGCGAC
GGCCAGGACGACTGCGGCGACTCCAGCGACGAGAGCGCCTGTGGAATCTGTGTGGGTGGC
TTTCCTGTAGACAGAATGTCCCAAGGATCCGTCAGCGGGAGCTGCCTCCCCGCGGACTGG
CGCTGCGACGGGCGGGACGACTGCGGGGACGGGAGCGATGAGCTGGACTGCCCCTCGCCG
CCGGGGACGGCCTCGTGCCCGGACGGGCACTTCGCGTGCCTCAACGGGCAGTGCGTGCCC
GCCGCCTGGGTTTGCGACTCCGACAACGACTGCGGCGACGCCTCCGACGAGCGCAACTGC
ACGACGCGCGAGCCGGGCCGGTGCCTCCGCGCCGAGTTCCAGTGCCGGGCGGACGGCTTC
TGCCTCCCGGGCGAGTGGGAGTGCGACGGGCACGCCGACTGCGACGACGACTCGGACGAG
CACGTCGGCTGCCCCCCGCCCCCGCCTGCCCCTCGGCATCCTCGGGCGGCGACCCCGCCG
GCGACG
>KE993784.1:subseq(789625,100212).[32625:21909].sp
CCCGCGCGGGCCTCGTTCCGCTGCGACGACGGGCGGTGCGTGTCGGCCGCGTGGCGCTGC
GACGGCGACCGCGACTGCCGCGACGGGAGCGACGAGCGCGGCTGCCCCGCGCCGGCGTTC
ACCTGCCCCGCCGAGCGCCAGTGGGCCTGCCCCGGGCAGCGGGTGTGCGTGGCGCACGAG
CGGCTGTGCGACGGCAAGGAGGACTGCCCCGACGGGGCCGACGAGTCCCCGCTGTGCAAC
CGCGACGACTGCGCCGTGAGCTCCGGCGGCTGCTCGGACGTCTGCGTGCAGGGCCCGTTC
GGCGCGCAGTGCACCTGCGCGCCGGGCCTGCGCCTGCTCGACGACGGCAAGACGTGCATG
GACGAGGACGAGTGCGCGACGCCCGGCGCCTGCAGCCAGCGCTGCATCAACCGGCGCAGG
TCGTTCCGCTGCCACTGCGAGCCGGGCTACGTCCTGCAGCCCGACGGCCGCTCCTGCAAG
GCCACGGGTCCCGGGCCGGCGCTGCTGCTGGTGTCCACGCGGCACGCGGTGCTGGAGTTG
GAGCTGGGTTCGGCGGCGCCGACGCTGCAGACGCTGGTGGACGGCGCGGCCGGCCTGGTC
GGCCTGGACGTCCACTGGGCCTCGGGGCGTCTCTTCTGGGCCGACTCGGTCGCCGGGCAG
CTGTGGAGCTCCTCGCTGTCGAGACACAACCGCACGCTGGTGCTGGGGGGCGGAGTGGTG
GGCGTGGAGGGTGTGGCCGTGGACTGGGTGGCAGGTAACCTGTACTGGGCGGACAGCGTG
CTGGAGTCGCTGCAGGTGGCGCGGCTCGACGGCACCCACCGAGCGACGCTGCTCAGCGAC
AACGTCACGAGCCCGCGGGGCCTCGTGCTCGACCCGCGGAACCAGTCCCGCCTTGTGTTC
TGGTCGGACTGGGGCCGTCAGCCGAGCATCGAGCGCGCCAGCATGGACGGCCGCTTCCGC
CGCGTGCTCGTGTCGCACAAGCTCTACTGGCCCAACGGGCTGGCGCTCGACTACGCCACG
GACACGCTCTACTTCGCCGACGCCTACCTCGACTCGCTCGACTCGTGCGACTTCAACGGC
GAGCACCGCCGGCAGATCCTCGCCGGGGACCACCTGCTGCAGCACCCGCATGCTCTGGCG
GTGTTCGAGGACTGGGTGTACTGGACGGAGCGGCACACGGGTCGCGTGGTGCGCGCCAAC
CGCTGGCACGGCACCAACACCAGCGTCGTCCTGGAGGGGCTGGAGCAGCCGCTGGCGGCC
GTGGTAGTGCACCCAGTCCGGCAGCCCCCGGACTCGGCGGGCGGCACCAACGGCTGCAGC
GGCGGCGGCGCCTCCCCGAACGGCGGCTGCGAGCAGCTGTGCCTGCCCGTGCCG
//
KE993784.1:subseq(789625,100212)	GeneWise	match	57233	32631	122.36	-	.	KE993784.1:subseq(789625,100212)-genewise-prediction-1
KE993784.1:subseq(789625,100212)	GeneWise	cds	57233	57128	0.00	-	0	KE993784.1:subseq(789625,100212)-genewise-prediction-1
KE993784.1:subseq(789625,100212)	GeneWise	intron	57127	56124	0.00	-	.	KE993784.1:subseq(789625,100212)-genewise-prediction-1
KE993784.1:subseq(789625,100212)	GeneWise	cds	56123	56007	0.00	-	2	KE993784.1:subseq(789625,100212)-genewise-prediction-1
KE993784.1:subseq(789625,100212)	GeneWise	intron	56006	45674	0.00	-	.	KE993784.1:subseq(789625,100212)-genewise-prediction-1
KE993784.1:subseq(789625,100212)	GeneWise	cds	45673	45622	0.00	-	2	KE993784.1:subseq(789625,100212)-genewise-prediction-1
KE993784.1:subseq(789625,100212)	GeneWise	intron	45621	34808	0.00	-	.	KE993784.1:subseq(789625,100212)-genewise-prediction-1
KE993784.1:subseq(789625,100212)	GeneWise	cds	34807	34602	0.00	-	1	KE993784.1:subseq(789625,100212)-genewise-prediction-1
KE993784.1:subseq(789625,100212)	GeneWise	intron	34601	32816	0.00	-	.	KE993784.1:subseq(789625,100212)-genewise-prediction-1
KE993784.1:subseq(789625,100212)	GeneWise	cds	32815	32631	0.00	-	2	KE993784.1:subseq(789625,100212)-genewise-prediction-1
KE993784.1:subseq(789625,100212)	GeneWise	match	32625	21911	280.92	-	.	KE993784.1:subseq(789625,100212)-genewise-prediction-2
KE993784.1:subseq(789625,100212)	GeneWise	cds	32625	32388	0.00	-	0	KE993784.1:subseq(789625,100212)-genewise-prediction-2
KE993784.1:subseq(789625,100212)	GeneWise	intron	32387	31547	0.00	-	.	KE993784.1:subseq(789625,100212)-genewise-prediction-2
KE993784.1:subseq(789625,100212)	GeneWise	cds	31546	31298	0.00	-	2	KE993784.1:subseq(789625,100212)-genewise-prediction-2
KE993784.1:subseq(789625,100212)	GeneWise	intron	31297	29824	0.00	-	.	KE993784.1:subseq(789625,100212)-genewise-prediction-2
KE993784.1:subseq(789625,100212)	GeneWise	cds	29823	29612	0.00	-	2	KE993784.1:subseq(789625,100212)-genewise-prediction-2
KE993784.1:subseq(789625,100212)	GeneWise	intron	29611	29051	0.00	-	.	KE993784.1:subseq(789625,100212)-genewise-prediction-2
KE993784.1:subseq(789625,100212)	GeneWise	cds	29050	28866	0.00	-	0	KE993784.1:subseq(789625,100212)-genewise-prediction-2
KE993784.1:subseq(789625,100212)	GeneWise	intron	28865	28747	0.00	-	.	KE993784.1:subseq(789625,100212)-genewise-prediction-2
KE993784.1:subseq(789625,100212)	GeneWise	cds	28746	28518	0.00	-	1	KE993784.1:subseq(789625,100212)-genewise-prediction-2
KE993784.1:subseq(789625,100212)	GeneWise	intron	28517	28143	0.00	-	.	KE993784.1:subseq(789625,100212)-genewise-prediction-2
KE993784.1:subseq(789625,100212)	GeneWise	cds	28142	27965	0.00	-	0	KE993784.1:subseq(789625,100212)-genewise-prediction-2
KE993784.1:subseq(789625,100212)	GeneWise	intron	27964	21994	0.00	-	.	KE993784.1:subseq(789625,100212)-genewise-prediction-2
KE993784.1:subseq(789625,100212)	GeneWise	cds	21993	21911	0.00	-	2	KE993784.1:subseq(789625,100212)-genewise-prediction-2
//
