
genewise output
Score 21.85 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000041_2.0  118 PSKEVESFARKNYGVTFPIF                              
                     P  E+ +FA KN+ + F IF                              
                     PPSELSTFANKNFVLLFTIF                              
KE993701.1:subs79526 cctgttatgaaatgcttaat                              
                     cccatcctcaaatttttctt                              
                     attaatatacacttcgtatt                              


//
>KE993701.1:subseq(1238348,100149).pep
PPSELSTFANKNFVLLFTIF
//
>KE993701.1:subseq(1238348,100149).[79526:79585].sp
CCACCTTCTGAATTATCTACATTTGCAAACAAAAACTTTGTTCTCTTGTTTACAATTTTT
//
KE993701.1:subseq(1238348,100149)	GeneWise	match	79526	79585	21.85	+	.	KE993701.1:subseq(1238348,100149)-genewise-prediction-1
KE993701.1:subseq(1238348,100149)	GeneWise	cds	79526	79585	0.00	+	0	KE993701.1:subseq(1238348,100149)-genewise-prediction-1
//

genewise output
Score 47.51 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000041_2.0   46 SFYAFEVKDAKGRTVSLEKY                          GKV 
                     S+Y F  KD  G  VSLEKY                            V 
                     SMYEFSAKDIDGNEVSLEKY           K:K[aaa]       DHV 
KE993701.1:sub-52386 aatgttgagaggaggttgatAAGTGCGGG  Intron 1   CAGAgcg 
                     gtaatccaatagaatctaaa  <2-----[52324:50145]-2> aat 
                     cgcgcgggcccgtagaaaac                          cct 


SPP00000041_2.0   70 SLVVNVASDCQLTDRNYLGLKELHKEFGPSH-FSVLAFPCNQFGES    
                      +VVNVAS    T  NY  L  LHK++  SH   +LAFPCNQFG+     
                     CIVVNVASKXGKTAVNYTQLAALHKQYAESHGLRILAFPCNQFGKQ    
KE993701.1:sub-50134 taggaggtatgaaggataccggccactggacgccacgtctactgac    
                     gtttatccaggacctaacatcctaaaacagagtgttctcgaatgaa    
                     ccggcggggaggtcgcctgcttgcggctgcccccctcccccgtcgg    


SPP00000041_2.0  115                        EPRPSKEVESFARKNYGVTFPIFHKI 
                                            EP    E++ F +K Y V F +F KI 
                                            EPGTDAEIKEFVKK-YNVEFDMFSKI 
KE993701.1:sub-49996 GTAGGGG  Intron 2   CAGgcgagggaagtgaa taggtgattaa 
                     <0-----[49996:48789]-0>acgcacataattaa aatatattcat 
                                            agcgcggaggtggg ctggccgccac 


SPP00000041_2.0  141 KILGSEGEPAFRFL                                    
                      +      P +++L                                    
                     DVNSDSAHPLWKWL                                    
KE993701.1:sub-48713 ggatgagccctatc                                    
                     atacagcactgagt                                    
                     ccctccgcaggggg                                    


//
Making a K in phase 2 intron
>KE993701.1:subseq(1238348,100149).pep
SMYEFSAKDIDGNEVSLEKYKDHVCIVVNVASKXGKTAVNYTQLAALHKQYAESHGLRIL
AFPCNQFGKQEPGTDAEIKEFVKKYNVEFDMFSKIDVNSDSAHPLWKWL
//
>KE993701.1:subseq(1238348,100149).[52386:48670].sp
AGCATGTACGAGTTCTCGGCGAAGGACATCGACGGGAATGAAGTGTCATTAGAAAAATAC
AAAGACCACGTTTGCATCGTGGTGAACGTGGCGTCGAAGTGAGGGAAGACTGCCGTGAAC
TACACTCAGCTCGCTGCTCTGCACAAGCAGTACGCTGAGAGCCACGGCCTCCGCATCCTT
GCCTTCCCCTGCAACCAGTTTGGCAAGCAGGAACCGGGCACGGACGCGGAGATAAAGGAG
TTTGTGAAGAAGTACAATGTGGAGTTCGACATGTTCTCCAAAATCGACGTCAACTCTGAC
AGCGCGCACCCACTGTGGAAGTGGCTG
//
KE993701.1:subseq(1238348,100149)	GeneWise	match	52386	48672	47.51	-	.	KE993701.1:subseq(1238348,100149)-genewise-prediction-1
KE993701.1:subseq(1238348,100149)	GeneWise	cds	52386	52325	0.00	-	0	KE993701.1:subseq(1238348,100149)-genewise-prediction-1
KE993701.1:subseq(1238348,100149)	GeneWise	intron	52324	50145	0.00	-	.	KE993701.1:subseq(1238348,100149)-genewise-prediction-1
KE993701.1:subseq(1238348,100149)	GeneWise	cds	50144	49997	0.00	-	1	KE993701.1:subseq(1238348,100149)-genewise-prediction-1
KE993701.1:subseq(1238348,100149)	GeneWise	intron	49996	48789	0.00	-	.	KE993701.1:subseq(1238348,100149)-genewise-prediction-1
KE993701.1:subseq(1238348,100149)	GeneWise	cds	48788	48672	0.00	-	0	KE993701.1:subseq(1238348,100149)-genewise-prediction-1
//
