TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000124_2.0 # Protein # Selenoprotein W1 (SelW1) # Human
(Homo sapiens)
         (87 letters)

Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis/g
enome.fa 
           14,644 sequences; 2,174,243,242 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|397461887|gb|JH733614.1| Alligator mississippiensis unplaced ...    39   0.030

>gi|397461887|gb|JH733614.1| Alligator mississippiensis unplaced genomic
              scaffold scaffold-4174, whole genome shotgun sequence
          Length = 1203201

 Score = 39.3 bits (90), Expect = 0.030
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +1

Query: 39     EGTPQATGFFEVMVAGKLIHSKK 61
              EGT +ATG+FEV V GKL+HSKK
Sbjct: 545692 EGTREATGWFEVSVGGKLVHSKK 545760


  Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis
  /genome.fa
    Posted date:  Oct 18, 2013  5:53 PM
  Number of letters in database: 2,174,243,242
  Number of sequences in database:  14,644
  
Lambda     K      H
   0.318    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,592,621
Number of Sequences: 14644
Number of extensions: 1163708
Number of successful extensions: 3177
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3000
Number of HSP's gapped (non-prelim): 279
length of query: 87
length of database: 724,747,747
effective HSP length: 62
effective length of query: 25
effective length of database: 723,839,819
effective search space: 18095995475
effective search space used: 18095995475
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)