TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000087_2.0 # Protein # Methionine-R-sufoxide reductase 1
(SelR1) # Human (Homo sapiens)
(115 letters)
Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis/g
enome.fa
14,644 sequences; 2,174,243,242 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|397459852|gb|JH735649.1| Alligator mississippiensis unplaced ... 85 6e-16
gi|397461227|gb|JH734274.1| Alligator mississippiensis unplaced ... 37 0.20
gi|397459433|gb|JH736068.1| Alligator mississippiensis unplaced ... 36 0.26
gi|397460244|gb|JH735257.1| Alligator mississippiensis unplaced ... 36 0.26
gi|397461967|gb|JH733534.1| Alligator mississippiensis unplaced ... 36 0.33
gi|397462565|gb|JH732936.1| Alligator mississippiensis unplaced ... 35 0.57
gi|397461987|gb|JH733514.1| Alligator mississippiensis unplaced ... 35 0.74
gi|397461824|gb|JH733677.1| Alligator mississippiensis unplaced ... 33 2.2
gi|397463328|gb|JH732173.1| Alligator mississippiensis unplaced ... 33 2.2
gi|397456249|gb|JH739251.1| Alligator mississippiensis unplaced ... 32 3.7
gi|397457075|gb|JH738425.1| Alligator mississippiensis unplaced ... 32 6.3
gi|397460139|gb|JH735362.1| Alligator mississippiensis unplaced ... 32 6.3
gi|397458674|gb|JH736827.1| Alligator mississippiensis unplaced ... 31 8.2
gi|397459602|gb|JH735899.1| Alligator mississippiensis unplaced ... 31 8.2
gi|397248868|gb|AKHW01061131.1| Alligator mississippiensis scaff... 31 8.2
gi|397461743|gb|JH733758.1| Alligator mississippiensis unplaced ... 31 8.2
>gi|397459852|gb|JH735649.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-7522, whole genome shotgun sequence
Length = 345427
Score = 84.7 bits (208), Expect = 6e-16
Identities = 39/51 (76%), Positives = 43/51 (84%)
Frame = +2
Query: 58 RPEHNRSEALKVSCGKCGNGLGHEFLNDGPKPGQSRFXIFSSSLKFVPKGK 108
RP +R +VSCGKCGNGLGHEFLNDGPK GQSRF IFSSSLKF+PKG+
Sbjct: 299543 RPCTHRCPLFQVSCGKCGNGLGHEFLNDGPKKGQSRF*IFSSSLKFIPKGE 299695
Score = 83.6 bits (205), Expect = 1e-15
Identities = 40/71 (56%), Positives = 51/71 (71%)
Frame = +1
Query: 18 PGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNG 77
PG+YVC+KCGYELFSS++K+ HSSPWPAFT+T+HADSV+K E R LKV C G
Sbjct: 299305 PGIYVCSKCGYELFSSQAKFEHSSPWPAFTKTVHADSVSKYEE--RPGTLKVGTKSCWLG 299478
Query: 78 LGHEFLNDGPK 88
++GP+
Sbjct: 299479 ------SEGPR 299493
>gi|397461227|gb|JH734274.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-5294, whole genome shotgun sequence
Length = 544266
Score = 36.6 bits (83), Expect = 0.20
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -2
Query: 1 MSFCSFFGGEVFQNHFEPG 19
M FC+FFGGE ++ HFEPG
Sbjct: 190271 MFFCTFFGGECYRGHFEPG 190215
>gi|397459433|gb|JH736068.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-8225, whole genome shotgun sequence
Length = 2510647
Score = 36.2 bits (82), Expect = 0.26
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -3
Query: 1 MSFCSFFGGEVFQNHFEPG 19
MSFCSFF GE ++ HFEPG
Sbjct: 1323068 MSFCSFFTGERYRGHFEPG 1323012
>gi|397460244|gb|JH735257.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-6873, whole genome shotgun sequence
Length = 411337
Score = 36.2 bits (82), Expect = 0.26
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 42 PWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDGPKP 89
P P T H +RP+ + E + + G+CGN +G + L GP+P
Sbjct: 151847 PHPPAARTPH-----RRPQRSMREIVHIQAGQCGNQIGAKVLRPGPRP 151719
>gi|397461967|gb|JH733534.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-4036, whole genome shotgun sequence
Length = 218004
Score = 35.8 bits (81), Expect = 0.33
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = -3
Query: 73 KCGNGLGHEFLNDGPKPGQSRFXIFSSSLKFVPKGKETS 111
+CG LGH F +DGP+P R+ I S+SL F P K +
Sbjct: 33856 QCGAHLGHIF-DDGPRPTGKRYCINSASLSFEPVDKNNA 33743
>gi|397462565|gb|JH732936.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-3107, whole genome shotgun sequence
Length = 1705776
Score = 35.0 bits (79), Expect = 0.57
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 1 MSFCSFFGGEVFQNHFEPG 19
MSFC+FFG E ++ HFEPG
Sbjct: 218094 MSFCTFFGREHYRGHFEPG 218150
>gi|397461987|gb|JH733514.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-4006, whole genome shotgun sequence
Length = 202455
Score = 34.7 bits (78), Expect = 0.74
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3
Query: 1 MSFCSFFGGEVFQNHFEPG 19
MSFC+FFG + ++ HFEPG
Sbjct: 85875 MSFCAFFGRDCYRGHFEPG 85931
>gi|397461824|gb|JH733677.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-4278, whole genome shotgun sequence
Length = 447461
Score = 33.1 bits (74), Expect = 2.2
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = +3
Query: 1 MSFCSFFGGEVFQNHFEPGVYVCAKCGYELFSSRSKYA--HSSPWPAFTETIHADSVAKR 58
MS SF G V E G A C S R++Y+ SS WPA T + A + +
Sbjct: 35103 MSVISFLGPRV-----EGGPAGSAPCPPRSSSPRNRYSTPKSSSWPACTSSGAATTSSSS 35267
Query: 59 PEHNRSEALKVSCGKCGNGLGHEFLNDGPKP 89
+ S + S G+ G+G + + P+P
Sbjct: 35268 SSSSLSSSSLSSAGESKGGVGPAGVREVPRP 35360
>gi|397463328|gb|JH732173.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-1868, whole genome shotgun sequence
Length = 1425457
Score = 33.1 bits (74), Expect = 2.2
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +3
Query: 55 VAKRPEHNRSEALKVSCGKCGNGLGHEFLNDGPKPGQS 92
V+ PEH + A+ V CG CG GLG GP P Q+
Sbjct: 353028 VSMGPEHPMATAVGVGCGPCGGGLGP---CGGPMPPQA 353132
>gi|397456249|gb|JH739251.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-13567, whole genome shotgun sequence
Length = 553164
Score = 32.3 bits (72), Expect = 3.7
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -1
Query: 47 TETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDGPKPGQSRFXIFSSS 100
TE + + V +P H R+ L +SC + LGH L G + + + FSSS
Sbjct: 521094 TEVVTSKRVISQPNHQRAWVLNLSCKQAAAQLGHPLLL-GAQLRRGSYQFFSSS 520936
>gi|397457075|gb|JH738425.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-12161, whole genome shotgun sequence
Length = 1174832
Score = 31.6 bits (70), Expect = 6.3
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -2
Query: 59 PEHNRSEALKVSCGKCGNGLG 79
PEH + A VSCG CG GLG
Sbjct: 311416 PEHLMAAAAGVSCGPCGEGLG 311354
>gi|397460139|gb|JH735362.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-7031, whole genome shotgun sequence
Length = 318913
Score = 31.6 bits (70), Expect = 6.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Frame = -1
Query: 22 VCAKC-----GYELFSSRSKYAHSSPWPAFTETIHADSV 55
+C KC Y +SR +Y +++P+P F ETI S+
Sbjct: 38917 ICCKCRLKSCNYVKLTSRERYRYTNPFPNFYETIKQKSI 38801
>gi|397458674|gb|JH736827.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-9485, whole genome shotgun sequence
Length = 512282
Score = 31.2 bits (69), Expect = 8.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 58 RPEHNRSEALKVSCGKCGNGLGHEFLNDGPKPGQ 91
+P NR L+ SCG CG G G + GP+ Q
Sbjct: 510414 QPMGNRGLGLEPSCGHCGAGTGASSMGLGPESAQ 510313
>gi|397459602|gb|JH735899.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-7931, whole genome shotgun sequence
Length = 96870
Score = 31.2 bits (69), Expect = 8.2
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = -2
Query: 39 HSSPWPAFTETIHADSVA----KRPEHNRSEALKVSCGKCGNGLGHEFLNDGPKPGQSR 93
HSSP P+ + A ++ RP R E + CG G+G+ L GP G SR
Sbjct: 27947 HSSPTPS---PVSAPNLLLPFPSRPNMGRGEEEQALCGVSGDGVARGGLGSGPMQGVSR 27780
>gi|397248868|gb|AKHW01061131.1| Alligator mississippiensis
scaffold-6959_1, whole genome shotgun sequence
Length = 4982
Score = 31.2 bits (69), Expect = 8.2
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 1 MSFCSFFGGEVFQNHFEPG 19
MSF +FFGGE ++ HFE G
Sbjct: 3004 MSFSAFFGGEYYRGHFELG 2948
>gi|397461743|gb|JH733758.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-4412, whole genome shotgun sequence
Length = 683257
Score = 31.2 bits (69), Expect = 8.2
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
Frame = +2
Query: 24 AKCGYELFSS------RSKYAH--SSPWPAFTETIHADSVAKR----PEHNRSEALKVSC 71
A C E F R+ Y+H SS W ++T+HA S+ + P R+ + V+C
Sbjct: 605363 ANCKIEAFKH*LPK*RRNMYSHECSSDWGIXSKTLHASSIGRNLALSPSMRRASHITVAC 605542
Query: 72 G 72
G
Sbjct: 605543 G 605545
Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis
/genome.fa
Posted date: Oct 18, 2013 5:53 PM
Number of letters in database: 2,174,243,242
Number of sequences in database: 14,644
Lambda K H
0.318 0.134 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,803,852
Number of Sequences: 14644
Number of extensions: 7441347
Number of successful extensions: 29624
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 631
Number of HSP's that attempted gapping in prelim test: 26001
Number of HSP's gapped (non-prelim): 8928
length of query: 115
length of database: 724,747,747
effective HSP length: 90
effective length of query: 25
effective length of database: 723,429,787
effective search space: 18085744675
effective search space used: 18085744675
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)