Find start end points: [0,57915][107,59694] Score 50576
Recovering alignment: Alignment recoveredExplicit read offffe 55%

genewise output
Score 145.93 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

Information
	Name gi|397459852|gb|JH735649.1|:subseq(240000,100000) is longer than
allowed name block (15). Truncating

SPP00000087_2.0    1 MSFCSFFGGEVFQNHFEP                          VYVCA 
                     MSFC+F G E +   F+P                          +YVC+ 
                     MSFCAFRGAERYAGLFDP          G:G[ggc]        IYVCS 
gi|397459852|gb57914 atttgtcgggctggctgcGGTGAGCG  Intron 1   CAGGCatgtt 
                     tctgctggcagacgttac <1-----[57969:59308]-1>  tatgc 
                     gccccccccgcccccccg                          ccgcc 


SPP00000087_2.0   25 KCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALK      
                     KCGYELFSS++K+ HSSPWPAFT+T+HADSV+K  E  R   LK      
                     KCGYELFSSQAKFEHSSPWPAFTKTVHADSVSKYEE--RPGTLK      
gi|397459852|gb59326 atgtgcttacgatgcttctcgtaaagcggagtatgg  ccgaca      
                     aggaattcgacataacccgcctcactacagtcaaaa  gcgcta      
                     gcccgccccgcgcgcggggagccggctcccgcgcgg  tgccgg      


SPP00000087_2.0   69                        VSCGKCGNGLGHEFLNDGPKPGQSRF 
                                            VSCGKCGNGLGHEFLNDGPK GQSRF 
                                            VSCGKCGNGLGHEFLNDGPKKGQSRF 
gi|397459852|gb59452 GTGGGCA  Intron 2   CAGgttgatgagcgcgtcaggcaagctct 
                     <0-----[59452:59575]-0>tcggaggagtgaattaagcaagacgt 
                                            agccgcctcgccgccccggggggccc 


SPP00000087_2.0   95 XIFSSSLKFVPKGK                                    
                     XIFSSSLKF+PKG+                                    
                     XIFSSSLKFIPKGE                                    
gi|397459852|gb59654 tataatcatacagg                                    
                     gttggctattcaga                                    
                     aacccgggcccatg                                    


BUENA!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!

//
Making a G in phase 1 intron
>gi|397459852|gb|JH735649.1|:subseq(240000,100000).pep
MSFCAFRGAERYAGLFDPGIYVCSKCGYELFSSQAKFEHSSPWPAFTKTVHADSVSKYEE
RPGTLKVSCGKCGNGLGHEFLNDGPKKGQSRFXIFSSSLKFIPKGE
//
>gi|397459852|gb|JH735649.1|:subseq(240000,100000).[57914:59695].sp
ATGTCCTTCTGCGCCTTCCGCGGCGCCGAGCGCTACGCCGGCCTCTTCGACCCGGGCATC
TACGTGTGCTCCAAGTGCGGCTACGAGCTCTTCTCCAGCCAGGCCAAGTTCGAGCACTCG
TCGCCGTGGCCAGCGTTCACCAAGACGGTCCATGCCGACAGCGTGTCCAAGTACGAGGAG
CGTCCGGGCACCCTGAAGGTATCGTGCGGCAAGTGCGGCAATGGCCTGGGCCACGAGTTC
CTCAACGACGGGCCGAAGAAGGGGCAGTCCCGCTTCTGAATATTCAGCAGCTCGCTGAAG
TTCATCCCCAAAGGTGAG
//
gi|397459852|gb|JH735649.1|:subseq(240000,100000)	GeneWise	match	57914	59695	146.93	+	.	gi|397459852|gb|JH735649.1|:subseq(240000,100000)-genewise-prediction-1
gi|397459852|gb|JH735649.1|:subseq(240000,100000)	GeneWise	cds	57914	57968	0.00	+	0	gi|397459852|gb|JH735649.1|:subseq(240000,100000)-genewise-prediction-1
gi|397459852|gb|JH735649.1|:subseq(240000,100000)	GeneWise	intron	57969	59308	0.00	+	.	gi|397459852|gb|JH735649.1|:subseq(240000,100000)-genewise-prediction-1
gi|397459852|gb|JH735649.1|:subseq(240000,100000)	GeneWise	cds	59309	59451	0.00	+	2	gi|397459852|gb|JH735649.1|:subseq(240000,100000)-genewise-prediction-1
gi|397459852|gb|JH735649.1|:subseq(240000,100000)	GeneWise	intron	59452	59575	0.00	+	.	gi|397459852|gb|JH735649.1|:subseq(240000,100000)-genewise-prediction-1
gi|397459852|gb|JH735649.1|:subseq(240000,100000)	GeneWise	cds	59576	59695	0.00	+	0	gi|397459852|gb|JH735649.1|:subseq(240000,100000)-genewise-prediction-1
//