TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00002140_2.0 # Protein # Selenoprotein P (SelP) # Softshell
turtle (Pelodiscus sinensis)
         (201 letters)

Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis/g
enome.fa 
           14,644 sequences; 2,174,243,242 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|397460716|gb|JH734785.1| Alligator mississippiensis unplaced ...   129   3e-45
gi|397460395|gb|JH735106.1| Alligator mississippiensis unplaced ...    75   1e-12
gi|397456242|gb|JH739258.1| Alligator mississippiensis unplaced ...    33   8.8  
gi|397458990|gb|JH736511.1| Alligator mississippiensis unplaced ...    33   8.8  

>gi|397460716|gb|JH734785.1| Alligator mississippiensis unplaced genomic
             scaffold scaffold-6128, whole genome shotgun sequence
          Length = 359352

 Score =  129 bits (323), Expect(2) = 3e-45
 Identities = 59/72 (81%), Positives = 67/72 (93%)
 Frame = -3

Query: 63    SLGGLRAKLSRDGLTDISYMIVNEKAALSRAMYWQLKRQAPKGVPVYQQELLEPDVWQIL 122
             SLGGLR KLSR G+ ++SYMIVNEKA LSRAMYW+LKRQAP+GVPVYQQ +L+PDVWQIL
Sbjct: 96715 SLGGLREKLSRQGMANVSYMIVNEKAPLSRAMYWELKRQAPEGVPVYQQGILDPDVWQIL 96536

Query: 123   DGDKDDFLIYDR 134
             DGDKDDFLIYD+
Sbjct: 96535 DGDKDDFLIYDK 96500



 Score = 78.6 bits (192), Expect = 1e-13
 Identities = 34/46 (73%), Positives = 37/46 (80%)
 Frame = -2

Query: 134   RCGRLAFHIPLPYSFLHLRYVESAVRVTHAKDFCGNCSFYSNSTQE 179
             RCGRL FHI LPYSFLH  YVESAV  T+ KD+CGNC  YSNSTQ+
Sbjct: 94826 RCGRLVFHISLPYSFLHFPYVESAVHFTYTKDYCGNCIHYSNSTQQ 94689



 Score = 76.3 bits (186), Expect(2) = 3e-45
 Identities = 41/62 (66%), Positives = 45/62 (72%)
 Frame = -1

Query: 1     MATLLGLVVATPEDVAENKTRICQPAPQWAINGTAPMKRELGRVTVVALLKASXQFCLKQ 60
             +A LLGLV      +AE   RICQPAP W INGT PM   LG+VTVVALLKAS QFCLKQ
Sbjct: 97011 VAALLGLVATV---LAEVTDRICQPAPLWKINGTVPMDEALGQVTVVALLKAS*QFCLKQ 96841

Query: 61    AH 62
             A+
Sbjct: 96840 AN 96835


>gi|397460395|gb|JH735106.1| Alligator mississippiensis unplaced genomic
              scaffold scaffold-6630, whole genome shotgun sequence
          Length = 852651

 Score = 75.5 bits (184), Expect = 1e-12
 Identities = 36/72 (50%), Positives = 49/72 (68%)
 Frame = -2

Query: 63     SLGGLRAKLSRDGLTDISYMIVNEKAALSRAMYWQLKRQAPKGVPVYQQELLEPDVWQIL 122
              SL  LR KL  DGL +ISYM+VN +   S+     L+++  + + VYQQ+  +PDVW  L
Sbjct: 228485 SLEDLRVKLENDGLVNISYMVVNHQEITSQEKIHLLRKEVSEHIVVYQQDENQPDVWTTL 228306

Query: 123    DGDKDDFLIYDR 134
              +G+KDDFLIYDR
Sbjct: 228305 NGNKDDFLIYDR 228270



 Score = 53.1 bits (126), Expect = 6e-06
 Identities = 18/39 (46%), Positives = 29/39 (74%)
 Frame = -3

Query: 134    RCGRLAFHIPLPYSFLHLRYVESAVRVTHAKDFCGNCSF 172
              RCGRL +H+ LPY++L   YVE ++++ + +  CGNCS+
Sbjct: 227680 RCGRLVYHLELPYTYLSFPYVEESIKIAYCEQNCGNCSY 227564



 Score = 42.4 bits (98), Expect = 0.011
 Identities = 21/39 (53%), Positives = 24/39 (61%)
 Frame = -3

Query: 23     CQPAPQWAINGTAPMKRELGRVTVVALLKASXQFCLKQA 61
              C+  P+W I G  PM    G VTVVALL+AS   CL QA
Sbjct: 230497 CKEPPEWYIAGQDPMLNSRGSVTVVALLQAS*HLCLLQA 230381


>gi|397456242|gb|JH739258.1| Alligator mississippiensis unplaced genomic
             scaffold scaffold-13578, whole genome shotgun sequence
          Length = 606661

 Score = 32.7 bits (73), Expect = 8.8
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 143   PLPYSFLHLRYVESAVRVTHAKDFCGNCSFYSNSTQEVRN 182
             PLP S LH     S+V  THA  F G+  F  ++T+ +RN
Sbjct: 44057 PLPLSLLHYCIFYSSVAPTHASKF*GSGIFKLDNTKSMRN 44176


>gi|397458990|gb|JH736511.1| Alligator mississippiensis unplaced genomic
             scaffold scaffold-8948, whole genome shotgun sequence
          Length = 255580

 Score = 32.7 bits (73), Expect = 8.8
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +2

Query: 134   RCGRLAFHIPLPYSFLHLRYVESAVRVTHAKDFCGNCSFYSNSTQEVRNHSRARALTVAS 193
             RCG    HIP  ++ LH  +++S +  +  K +CG CS        VR H   R  T A 
Sbjct: 37454 RCG----HIPFSWAHLHEMFMQS*LINSTVKCYCGICS--------VRPHCGERG*TTAV 37597

Query: 194   GCAPR 198
              C  R
Sbjct: 37598 VCTAR 37612


  Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis
  /genome.fa
    Posted date:  Oct 18, 2013  5:53 PM
  Number of letters in database: 2,174,243,242
  Number of sequences in database:  14,644
  
Lambda     K      H
   0.323    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 612,512,525
Number of Sequences: 14644
Number of extensions: 10196892
Number of successful extensions: 38279
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 405
Number of HSP's that attempted gapping in prelim test: 35524
Number of HSP's gapped (non-prelim): 7637
length of query: 201
length of database: 724,747,747
effective HSP length: 123
effective length of query: 78
effective length of database: 722,946,535
effective search space: 56389829730
effective search space used: 56389829730
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 73 (32.7 bits)