Command line: [exonerate -m p2g --showtargetgff -q Sel.tortu/SELNTORTU.fa -t gi|397456876|gb|JH738624.1|subseq.fa -E]
Hostname: [ws101145]

** (process:2923): WARNING **: Exhaustively generating suboptimal alignments will be VERY SLOW

C4 Alignment:
------------
         Query: SPP00002135_2.0 # Protein # Selenoprotein N (SelN) # Softshell turtle (Pelodiscus sinensis)
        Target: gi|397456876|gb|JH738624.1|:subseq(580000,100000) Alligator mississippiensis unplaced genomic scaffold scaffold-12508, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 2257
   Query range: 0 -> 496
  Target range: 1122 -> 70900

     1 : AsnGln  >>>> Target Intron 1 >>>>  GluThrAlaLeuLysSerLeuGlyA :    11
         ||||||           56468 bp          |||||||||||||||:!!|||||||
         AsnGln++                         ++GluThrAlaLeuLysAlaLeuGlyA
  1123 : AACCAGgt.........................agGAGACAGCTTTGAAGGCTCTGGGAA : 57621

    12 : snGluGlyLeuPheLeuPheSerSerLeuAspThrAspLysAspLeuTyrIleSerProG :    31
         ||||||||!!!||||||||||||||||||||||||:!!!!.|||||||||:!:|||||||
         snGluGlyPhePheLeuPheSerSerLeuAspThrAsnAsnAspLeuTyrLeuSerProG
 57622 : ATGAGGGCTTTTTTCTCTTCTCCTCCCTGGACACTAACAATGATCTGTACCTGAGCCCTG : 57681

    32 : luGluPheLysProIleAlaGluLysLeuThr{G}  >>>> Target Intron 2 >> :    42
         ||||||||||||||||||||||||||||||||{|}            841 bp       
         luGluPheLysProIleAlaGluLysLeuThr{G}++                       
 57682 : AGGAGTTCAAGCCAATAGCTGAGAAGTTAACG{G}gt....................... : 57717

    43 : >>  {ly}ValThrProValSerAspPheGluGluGluGluThrLeuAspProAsnGlyG :    60
             {||}|||||||||||||||!!:!:!||||||||||||||||||||||||!:!||||
           ++{ly}ValThrProValSerGluTyrGluGluGluGluThrLeuAspProSerGlyG
 57718 : ..ag{GT}GTTACTCCTGTCTCTGAATACGAAGAGGAAGAGACGCTGGATCCCAGTGGGG : 58609

    61 : luThrLeuSerIleValAlaLysPheGlnProLeuLeuLeuGluThrMetThrLysSerL :    80
         ||! !||||||:!!!.!|||||||||||||||||||||:!!|||||||||||||||||||
         luMetLeuSerValAlaAlaLysPheGlnProLeuLeuMetGluThrMetThrLysSerL
 58610 : AGATGCTGTCTGTCGCTGCTAAATTCCAGCCCTTGCTCATGGAAACGATGACGAAGAGCA : 58669

    81 : ysAspGlyPheLeuGly  >>>> Target Intron 3 >>>>  IleSerHisValAl :    90
         |||||||||||||||||            639 bp           ||||||||||||||
         ysAspGlyPheLeuGly++                         ++IleSerHisValAl
 58670 : AAGACGGTTTTCTAGGAgt.........................agATTTCTCACGTTGC : 59338

    91 : aLeuSerGlyLeuArgAsnTrpThrAlaProAlaThrProValSerValMetSerAlaLy :   110
         ||||||||||||||||||||||||||||||||||.!!||||||!:!||||||! !|||!:
         aLeuSerGlyLeuArgAsnTrpThrAlaProAlaAlaProValAsnValMetPheAlaAr
 59339 : TCTGTCTGGGCTCCGGAACTGGACGGCGCCAGCGGCCCCCGTGAACGTGATGTTTGCCAG : 59398

   111 : sGlnPheLysAlaPheLeuProProLysAsnLysLeuGluLeuGlyAspProTrpTrpIl :   130
         !|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         gGlnPheLysAlaPheLeuProProLysAsnLysLeuGluLeuGlyAspProTrpTrpIl
 59399 : GCAGTTCAAAGCTTTTCTCCCTCCAAAGAATAAGCTGGAACTCGGCGATCCCTGGTGGAT : 59458

   131 : eIleProSerGluLeuAsnIlePheThrGlyTyrLeuSerAsnAsnArgPheSerLysSe :   150
         ||||||||||||||||||||||||||||||||||||||||||||||||||||! !    !
         eIleProSerGluLeuAsnIlePheThrGlyTyrLeuSerAsnAsnArgPheTyrProPr
 59459 : TATCCCTAGCGAACTGAACATCTTCACCGGGTACCTTTCTAACAACCGGTTTTACCCTCC : 59518

   151 : rGlnAspLeuProArgVal  >>>> Target Intron 4 >>>>  IleLeuIleHis :   160
         !     !  !  !!:!! !            325 bp           |||:!!||||||
         oAlaProLysGlyLysGlu++                         ++IleIleIleHis
 59519 : AGCCCCCAAGGGCAAAGAGgt.........................agATCATCATCCAC : 59873

   161 : LysLeuLeuSerMetPheHisProArgProPheValLysThrArgPheAlaProGlnGly :   180
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LysLeuLeuSerMetPheHisProArgProPheValLysThrArgPheAlaProGlnGly
 59874 : AAACTCTTGAGCATGTTCCATCCACGCCCGTTTGTAAAGACCCGCTTTGCGCCTCAAGGC : 59933

   181 : AlaValAlaCysValGlnAlaIleSerGluPheTyrTyrLeuIleAlaLeu{Ar}  >>> :   198
         ||||||||||||:!!||||||! !|||||||||||||||  !:!!|||!!!{||}     
         AlaValAlaCysIleGlnAlaSerSerGluPheTyrTyrThrValAlaPhe{Ar}++   
 59934 : GCTGTGGCCTGCATCCAGGCAAGCAGCGAGTTTTACTATACCGTCGCATTC{AG}gt... : 59991

   199 : > Target Intron 5 >>>>  {g}IleHisAlaGluPheGlnLeuAsnGluProPro :   209
               1222 bp           {|}|||||||||||||||||||||||||||||||||
                               ++{g}IleHisAlaGluPheGlnLeuAsnGluProPro
 59992 : ......................ag{G}ATTCATGCTGAGTTCCAGTTGAATGAGCCTCCA : 61242

   210 : AspPheProPheTrpPheSerProAlaGlnPheThrGlyHisIleValLeuSerArgAsp :   229
         ||||||||||||||||||||||||!.!|||||||||||||||:!!:!!||||||!:!|||
         AspPheProPheTrpPheSerProGlyGlnPheThrGlyHisValIleLeuSerLysAsp
 61243 : GATTTCCCTTTCTGGTTCTCCCCTGGCCAGTTCACAGGACACGTCATCCTCTCCAAAGAT : 61302

   230 : SerSerHisValArgGluPheLysLeuPheValProAsnLys{Ar}  >>>> Target  :   244
         |||||||||||||||||||||||||||||||||||||||!!.{||}           224
         SerSerHisValArgGluPheLysLeuPheValProAsnAsn{Ar}++            
 61303 : TCTTCCCATGTTCGGGAGTTCAAGCTCTTTGTCCCAAACAAC{AG}gt............ : 61351

   245 : Intron 6 >>>>  {g}SerLeuAsnValAspMetGluTrpLeuTyrGlyAlaSerGlu :   258
         3 bp           {|}||||||||||||||||||||||||||||||||||||||||||
                      ++{g}SerLeuAsnValAspMetGluTrpLeuTyrGlyAlaSerGlu
 61352 : .............ag{G}TCCCTAAACGTTGACATGGAATGGCTATACGGGGCGAGTGAA : 63632

   259 : SerSerSerMetGluValAspIleGlyTyrLeuProGln  >>>> Target Intron  :   272
         ||||||!:!||||||||||||||||||||||||||||||           1041 bp   
         SerSerAsnMetGluValAspIleGlyTyrLeuProGln++                   
 63633 : AGCAGCAACATGGAGGTGGACATTGGTTACCTCCCGCAGgt................... : 63676

   273 : 7 >>>>  MetGluLeuGluSerSerGlyProSerIleProSerValIleHisAspGluA :   289
                 |||||||||||||||! !||||||||||||||||||||||||||||||||||
               ++MetGluLeuGluSerMetGlyProSerIleProSerValIleHisAspGluA
 63677 : ......agATGGAGTTAGAATCGATGGGGCCATCCATCCCTTCTGTGATTCACGATGAAA : 64766

   290 : snGlyAsnValLeuAspSerArgAspProAlaGlyGluProValGlnPheValPheGluG :   309
         |||||||||||:!!|||||||||||||||.!!|||||||||:!!||||||||||||||||
         snGlyAsnValIleAspSerArgAspProThrGlyGluProIleGlnPheValPheGluG
 64767 : ATGGAAATGTGATTGACAGCAGAGACCCCACGGGGGAGCCCATCCAGTTTGTGTTTGAAG : 64826

   310 : luIleArgTrpGlnGlnGluMetSerTrpGluGluAlaAlaGlnLysLeuGluValAlaM :   329
         |||||! !|||||||||:!!!!:!!!||||||||||||||||||||||||||||||||||
         luIleThrTrpGlnGlnLysIleThrTrpGluGluAlaAlaGlnLysLeuGluValAlaM
 64827 : AGATAACCTGGCAGCAGAAAATCACTTGGGAGGAAGCGGCTCAGAAGCTGGAAGTTGCCA : 64886

   330 : etTyrProPheLysLys  >>>> Target Intron 8 >>>>  ValSerTyrLeuPr :   339
         |||||||||||||||||           1465 bp           ||||||||||||||
         etTyrProPheLysLys++                         ++ValSerTyrLeuPr
 64887 : TGTATCCGTTTAAGAAAgt.........................agGTTTCGTACCTGCC : 66381

   340 : oPheThrGlnAlaPheGluArgAlaLysAlaGluLysLysLeuValHisSerIleLeuLe :   359
         ||||||||||||||||||||||||||||||||||!!.|||||||||||||||||||||||
         oPheThrGlnAlaPheGluArgAlaLysAlaGluAsnLysLeuValHisSerIleLeuLe
 66382 : CTTTACACAAGCCTTTGAGAGAGCAAAAGCTGAGAACAAGCTGGTGCACTCCATCCTGCT : 66441

   360 : uTrpGlyAlaLeuAspAspGlnSerCysUnk{G}  >>>> Target Intron 9 >>> :   370
         ||||||||||||||||||||||||||||   {|}            498 bp        
         uTrpGlyAlaLeuAspAspGlnSerCys***{G}++                        
 66442 : GTGGGGCGCGCTGGACGACCAGTCCTGCTGA{G}gt........................ : 66477

   371 : >  {ly}SerGlyArgThrLeuArgGluThrValLeuGluSerSerProValLeuAlaLe :   388
            {||}||||||||||||||||||||||||||||||||||||||||||:!!||||||||
          ++{ly}SerGlyArgThrLeuArgGluThrValLeuGluSerSerProIleLeuAlaLe
 66478 : .ag{GT}TCGGGGCGGACTCTCCGGGAGACCGTCCTGGAAAGTTCGCCCATCCTCGCTTT : 67026

   389 : uLeuAsnGluSerPheValSerSerTrpSerLeuValLysGluLeuGluGluLeuGln   :   408
         |||||||||||||||||||||||||||||||||||||||||||||||||!!:||||||  
         uLeuAsnGluSerPheValSerSerTrpSerLeuValLysGluLeuGluAspLeuGln++
 67027 : GCTGAATGAGAGCTTTGTCAGCAGCTGGTCACTAGTGAAGGAGCTAGAGGACTTGCAGgt : 67086

   409 : >>>> Target Intron 10 >>>>  AlaArgArgGlnAspLysPheSerSerGlnLe :   418
                   1368 bp           .!!!:!|||:!!:!!:!!|||! !!!!:!!||
                                   ++ThrLysArgGluAsnGluPheTyrArgLysLe
 67087 : ..........................agACCAAGAGAGAGAATGAATTCTACAGGAAGCT : 68484

   419 : uAlaAlaLeuHisLeuGluLysTyrAsnPheProValGluMetMetIleCysLeuProAs :   438
         ||||! !|||||||||||||||||||||||||||||||||||||||||||||||||||||
         uAlaGluLeuHisLeuGluLysTyrAsnPheProValGluMetMetIleCysLeuProAs
 68485 : AGCGGAGCTGCACCTAGAGAAATACAACTTCCCTGTGGAGATGATGATCTGCCTTCCCAA : 68544

   439 : nGlyThrVal  >>>> Target Intron 11 >>>>  IleHisHisIleAsnAlaAs :   448
         ||||||||||            2180 bp           ||||||||||||||||||||
         nGlyThrVal++                          ++IleHisHisIleAsnAlaAs
 68545 : TGGAACAGTGgt..........................agATTCACCACATCAATGCCAA : 70754

   449 : nTyrPheLeuAspIleThrSerMetLysProGluGluValGluSerSerIlePheSerPh :   468
         |||||||||||||||||||||||||||||||||||||||||||||||||:!!||||||||
         nTyrPheLeuAspIleThrSerMetLysProGluGluValGluSerSerValPheSerPh
 70755 : CTACTTCCTGGATATTACTTCTATGAAGCCCGAAGAAGTTGAGAGCAGCGTCTTCAGTTT : 70814

   469 : eSerSerAsnPheGluAspProSerThrAlaThrTyrLeuGlnPheLeuLysGluGlyLe :   488
         ||||!!!|||||||||||||||||||||||||||||||||!:!|||||||||||||||||
         eSerThrAsnPheGluAspProSerThrAlaThrTyrLeuArgPheLeuLysGluGlyLe
 70815 : CTCAACCAATTTTGAAGATCCTTCTACTGCGACCTACCTCCGGTTCCTGAAGGAGGGACT : 70874

   489 : uGlnArgAlaLysProPheLeuGln :   496
         |!!.|||||||||||||||||||||
         uHisArgAlaLysProPheLeuGln
 70875 : GCACAGAGCAAAACCCTTCTTGCAG : 70900

vulgar: SPP00002135_2.0 0 496 . gi|397456876|gb|JH738624.1|:subseq(580000,100000) 1122 70900 + 2257 M 2 6 5 0 2 I 0 56464 3 0 2 M 39 117 S 0 1 5 0 2 I 0 837 3 0 2 S 1 2 M 43 129 5 0 2 I 0 635 3 0 2 M 71 213 5 0 2 I 0 321 3 0 2 M 41 123 S 0 2 5 0 2 I 0 1218 3 0 2 S 1 1 M 45 135 S 0 2 5 0 2 I 0 2239 3 0 2 S 1 1 M 27 81 5 0 2 I 0 1037 3 0 2 M 63 189 5 0 2 I 0 1461 3 0 2 M 35 105 S 0 1 5 0 2 I 0 494 3 0 2 S 1 2 M 37 111 5 0 2 I 0 1364 3 0 2 M 34 102 5 0 2 I 0 2176 3 0 2 M 55 165
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-21
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	gene	1123	70900	2257	+	.	gene_id 1 ; sequence SPP00002135_2.0 ; gene_orientation +
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	cds	1123	1128	.	+	.	
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	exon	1123	1128	.	+	.	insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice5	1129	1130	.	+	.	intron_id 1 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	intron	1129	57596	.	+	.	intron_id 1
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice3	57595	57596	.	+	.	intron_id 0 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	cds	57597	57714	.	+	.	
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	exon	57597	57714	.	+	.	insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice5	57715	57716	.	+	.	intron_id 2 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	intron	57715	58555	.	+	.	intron_id 2
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice3	58554	58555	.	+	.	intron_id 1 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	cds	58556	58686	.	+	.	
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	exon	58556	58686	.	+	.	insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice5	58687	58688	.	+	.	intron_id 3 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	intron	58687	59325	.	+	.	intron_id 3
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice3	59324	59325	.	+	.	intron_id 2 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	cds	59326	59538	.	+	.	
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	exon	59326	59538	.	+	.	insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice5	59539	59540	.	+	.	intron_id 4 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	intron	59539	59863	.	+	.	intron_id 4
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice3	59862	59863	.	+	.	intron_id 3 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	cds	59864	59988	.	+	.	
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	exon	59864	59988	.	+	.	insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice5	59989	59990	.	+	.	intron_id 5 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	intron	59989	61210	.	+	.	intron_id 5
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice3	61209	61210	.	+	.	intron_id 4 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	cds	61211	61348	.	+	.	
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	exon	61211	61348	.	+	.	insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice5	61349	61350	.	+	.	intron_id 6 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	intron	61349	63591	.	+	.	intron_id 6
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice3	63590	63591	.	+	.	intron_id 5 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	cds	63592	63673	.	+	.	
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	exon	63592	63673	.	+	.	insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice5	63674	63675	.	+	.	intron_id 7 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	intron	63674	64714	.	+	.	intron_id 7
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice3	64713	64714	.	+	.	intron_id 6 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	cds	64715	64903	.	+	.	
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	exon	64715	64903	.	+	.	insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice5	64904	64905	.	+	.	intron_id 8 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	intron	64904	66368	.	+	.	intron_id 8
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice3	66367	66368	.	+	.	intron_id 7 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	cds	66369	66474	.	+	.	
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	exon	66369	66474	.	+	.	insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice5	66475	66476	.	+	.	intron_id 9 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	intron	66475	66972	.	+	.	intron_id 9
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice3	66971	66972	.	+	.	intron_id 8 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	cds	66973	67085	.	+	.	
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	exon	66973	67085	.	+	.	insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice5	67086	67087	.	+	.	intron_id 10 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	intron	67086	68453	.	+	.	intron_id 10
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice3	68452	68453	.	+	.	intron_id 9 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	cds	68454	68555	.	+	.	
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	exon	68454	68555	.	+	.	insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice5	68556	68557	.	+	.	intron_id 11 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	intron	68556	70735	.	+	.	intron_id 11
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	splice3	70734	70735	.	+	.	intron_id 10 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	cds	70736	70900	.	+	.	
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	exon	70736	70900	.	+	.	insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,100000)	exonerate:protein2genome:local	similarity	1123	70900	2257	+	.	alignment_id 1 ; Query SPP00002135_2.0 ; Align 1123 1 6 ; Align 57597 3 117 ; Align 58558 43 129 ; Align 59326 86 213 ; Align 59864 157 123 ; Align 61212 199 135 ; Align 63593 245 81 ; Align 64715 272 189 ; Align 66369 335 105 ; Align 66975 371 111 ; Align 68454 408 102 ; Align 70736 442 165
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis