Command line: [exonerate -m p2g --showtargetgff -q ../Sel.tortu/SELKT.fa -t gi|397459294|gb|JH736207.1|subseq.fa -E]
Hostname: [ws101146]

C4 Alignment:
------------
         Query: SPP00002131_2.0 # Protein # Selenoprotein K (SelK) # Softshell turtle (Pelodiscus sinensis)
        Target: gi|397459294|gb|JH736207.1|:subseq(0,100000) Alligator mississippiensis unplaced genomic scaffold scaffold-8455, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 382
   Query range: 0 -> 94
  Target range: 54271 -> 57664

     1 : MetValTyrIleSerAsn{G}  >>>> Target Intron 1 >>>>  {ly}GlnVal :     9
         ||||||||||||||||||{|}            808 bp           {||}||||||
         MetValTyrIleSerAsn{G}++                         ++{ly}GlnVal
 54272 : ATGGTTTACATCTCCAAC{G}gt.........................ag{GA}CAAGTG : 55104

    10 : LeuAspThrGlnSerArgAlaProTrpSerLeuSerPheIleThrAspPhePheTrpGly :    29
         |||! !!.!|||!:!|||||||||||||||||||||! !||||||||||||||||||!.!
         LeuGlyAsnGlnAsnArgAlaProTrpSerLeuSerSerIleThrAspPhePheTrpAla
 55105 : TTGGGTAACCAGAATCGGGCTCCTTGGAGTTTATCATCTATAACAGATTTCTTCTGGGCA : 55164

    30 : IleAlaAspPheValValLeu{Ph}  >>>> Target Intron 2 >>>>  {e}Phe :    38
         |||||||||||||||||||||{||}           1507 bp           {|}|||
         IleAlaAspPheValValLeu{Ph}++                         ++{e}Phe
 55165 : ATAGCAGATTTTGTGGTCTTG{TT}gt.........................ag{T}TTC : 56698

    39 : GlnSerIleValGlnProAsnLeuArgArgArgGlyTyrThrSerSerSerAsnSerArg :    58
         |||||||||:!!||||||:!!|||||||||!:!||| !!|||||||||||| !!||||||
         GlnSerIleIleGlnProAspLeuArgArgLysGlyAsnThrSerSerSerTyrSerArg
 56699 : CAGAGTATTATTCAACCAGACTTGAGAAGGAAGGGGAACACATCTTCCTCATATTCAAGA : 56758

    59 : TyrAspAspGlyArg{Gl}  >>>> Target Intron 3 >>>>  {y}ProProGly :    67
         |||||||||||||||{||}            793 bp           {|}|||||||||
         TyrAspAspGlyArg{Gl}++                         ++{y}ProProGly
 56759 : TACGATGATGGAAGA{GG}gt.........................ag{G}CCTCCAGGA : 57578

    68 : AsnProArgArgArgMetGlyArgIleAsnHis<->GlyGlyGlyProSerProProPro :    86
         |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
         AsnProArgArgArgMetGlyArgIleAsnHisPheGlyGlyGlyProSerProProPro
 57579 : AATCCTCGCCGTAGAATGGGTCGAATAAATCACTTTGGTGGAGGTCCCAGTCCACCACCC : 57638

    87 : MetAlaGlyGlyGlyUnkGlyArg :    94
         |||||||||||||||   ||||||
         MetAlaGlyGlyGly***GlyArg
 57639 : ATGGCTGGAGGTGGATGAGGAAGG : 57664

vulgar: SPP00002131_2.0 0 94 . gi|397459294|gb|JH736207.1|:subseq(0,100000) 54271 57664 + 382 M 6 18 S 0 1 5 0 2 I 0 804 3 0 2 S 1 2 M 29 87 S 0 2 5 0 2 I 0 1503 3 0 2 S 1 1 M 26 78 S 0 2 5 0 2 I 0 789 3 0 2 S 1 1 M 14 42 G 0 3 M 16 48
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-29
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|397459294|gb|JH736207.1|:subseq(0,100000)	exonerate:protein2genome:local	gene	54272	57664	382	+	.	gene_id 1 ; sequence SPP00002131_2.0 ; gene_orientation +
gi|397459294|gb|JH736207.1|:subseq(0,100000)	exonerate:protein2genome:local	cds	54272	54290	.	+	.	
gi|397459294|gb|JH736207.1|:subseq(0,100000)	exonerate:protein2genome:local	exon	54272	54290	.	+	.	insertions 0 ; deletions 0
gi|397459294|gb|JH736207.1|:subseq(0,100000)	exonerate:protein2genome:local	splice5	54291	54292	.	+	.	intron_id 1 ; splice_site "GT"
gi|397459294|gb|JH736207.1|:subseq(0,100000)	exonerate:protein2genome:local	intron	54291	55098	.	+	.	intron_id 1
gi|397459294|gb|JH736207.1|:subseq(0,100000)	exonerate:protein2genome:local	splice3	55097	55098	.	+	.	intron_id 0 ; splice_site "AG"
gi|397459294|gb|JH736207.1|:subseq(0,100000)	exonerate:protein2genome:local	cds	55099	55189	.	+	.	
gi|397459294|gb|JH736207.1|:subseq(0,100000)	exonerate:protein2genome:local	exon	55099	55189	.	+	.	insertions 0 ; deletions 0
gi|397459294|gb|JH736207.1|:subseq(0,100000)	exonerate:protein2genome:local	splice5	55190	55191	.	+	.	intron_id 2 ; splice_site "GT"
gi|397459294|gb|JH736207.1|:subseq(0,100000)	exonerate:protein2genome:local	intron	55190	56696	.	+	.	intron_id 2
gi|397459294|gb|JH736207.1|:subseq(0,100000)	exonerate:protein2genome:local	splice3	56695	56696	.	+	.	intron_id 1 ; splice_site "AG"
gi|397459294|gb|JH736207.1|:subseq(0,100000)	exonerate:protein2genome:local	cds	56697	56777	.	+	.	
gi|397459294|gb|JH736207.1|:subseq(0,100000)	exonerate:protein2genome:local	exon	56697	56777	.	+	.	insertions 0 ; deletions 0
gi|397459294|gb|JH736207.1|:subseq(0,100000)	exonerate:protein2genome:local	splice5	56778	56779	.	+	.	intron_id 3 ; splice_site "GT"
gi|397459294|gb|JH736207.1|:subseq(0,100000)	exonerate:protein2genome:local	intron	56778	57570	.	+	.	intron_id 3
gi|397459294|gb|JH736207.1|:subseq(0,100000)	exonerate:protein2genome:local	splice3	57569	57570	.	+	.	intron_id 2 ; splice_site "AG"
gi|397459294|gb|JH736207.1|:subseq(0,100000)	exonerate:protein2genome:local	cds	57571	57664	.	+	.	
gi|397459294|gb|JH736207.1|:subseq(0,100000)	exonerate:protein2genome:local	exon	57571	57664	.	+	.	insertions 3 ; deletions 0
gi|397459294|gb|JH736207.1|:subseq(0,100000)	exonerate:protein2genome:local	similarity	54272	57664	382	+	.	alignment_id 1 ; Query SPP00002131_2.0 ; Align 54272 1 18 ; Align 55101 8 87 ; Align 56698 38 78 ; Align 57572 65 42 ; Align 57617 79 48
# --- END OF GFF DUMP ---
#