TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000071_2.0 # Protein # Selenoprotein H (SelH) # Human
(Homo sapiens)
         (122 letters)

Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis/g
enome.fa 
           14,644 sequences; 2,174,243,242 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|397463590|gb|JH731911.1| Alligator mississippiensis unplaced ...    63   3e-09
gi|397460563|gb|JH734938.1| Alligator mississippiensis unplaced ...    34   1.3  
gi|397462872|gb|JH732629.1| Alligator mississippiensis unplaced ...    32   3.7  
gi|397460904|gb|JH734597.1| Alligator mississippiensis unplaced ...    32   4.8  
gi|397458122|gb|JH737379.1| Alligator mississippiensis unplaced ...    32   6.3  

>gi|397463590|gb|JH731911.1| Alligator mississippiensis unplaced genomic
              scaffold scaffold-1455, whole genome shotgun sequence
          Length = 452107

 Score = 62.8 bits (151), Expect = 3e-09
 Identities = 30/46 (65%), Positives = 37/46 (80%)
 Frame = +1

Query: 45     RVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSS 90
              RVYGRNA+ALS+ALR     L V++NP KPRR SFEV+L++ DGSS
Sbjct: 227293 RVYGRNASALSEALRHAVDNLAVEINPEKPRRNSFEVSLVKEDGSS 227430



 Score = 55.5 bits (132), Expect = 4e-07
 Identities = 24/31 (77%), Positives = 28/31 (90%)
 Frame = +3

Query: 92     ELWTGIKKGPPRKLKFPEPQEVVEELKKYLS 122
              ELW+GIKKGPPRKLKFPEP++VVE LK  L+
Sbjct: 227751 ELWSGIKKGPPRKLKFPEPEKVVEALKSSLA 227843


>gi|397460563|gb|JH734938.1| Alligator mississippiensis unplaced genomic
             scaffold scaffold-6379, whole genome shotgun sequence
          Length = 348239

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 23/71 (32%), Positives = 29/71 (40%)
 Frame = +3

Query: 41    CTSXRVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGIKKG 100
             C+  R  G +A +     RL A  LP     T       E+ LL  DG  A  W G  +G
Sbjct: 65757 CSELRALGSSAFSSGATCRLYASCLPGSSRAT-------ELCLLLQDGQWAHSWHGAPEG 65915

Query: 101   PPRKLKFPEPQ 111
                K + P PQ
Sbjct: 65916 KTAKWRSPSPQ 65948


>gi|397462872|gb|JH732629.1| Alligator mississippiensis unplaced genomic
             scaffold scaffold-2560, whole genome shotgun sequence
          Length = 573371

 Score = 32.3 bits (72), Expect = 3.7
 Identities = 33/96 (34%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
 Frame = +1

Query: 28    GEGMEEATVV----IEHCTSXRVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTL 83
             GEG ++  V       HC S RV GR AA L  AL L  P  P   +PT P RG++ +T 
Sbjct: 64669 GEGEQDTWVSSPSPAPHCPS-RVGGREAA-LDLALCLSFPFAPTSSHPTFP*RGNWALTR 64842

Query: 84    LRPDGSS------------AELWTGIKKGPPRKLKF 107
               P   S             E+W   K    + LKF
Sbjct: 64843 PLPGPHSRSRAESQDIYREGEVWREEKLMVQKPLKF 64950


>gi|397460904|gb|JH734597.1| Alligator mississippiensis unplaced genomic
              scaffold scaffold-5811, whole genome shotgun sequence
          Length = 304871

 Score = 32.0 bits (71), Expect = 4.8
 Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = -2

Query: 60     LEAPELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGI-----KKGPPRKLK 106
              L++P+ PV +N TKPR  +   TL RP G  A LW G        G  RKLK
Sbjct: 107458 LQSPKCPVGMN-TKPRGPAQIPTLHRPCGDHA*LWKGALLAARPGGGSRKLK 107306


>gi|397458122|gb|JH737379.1| Alligator mississippiensis unplaced genomic
              scaffold scaffold-10406, whole genome shotgun sequence
          Length = 1825572

 Score = 31.6 bits (70), Expect = 6.3
 Identities = 19/40 (47%), Positives = 21/40 (52%)
 Frame = +3

Query: 74     PRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFPEPQEV 113
              PRRGS    LLRP G +A         PPR L +P P EV
Sbjct: 988302 PRRGSEAGLLLRPAGGAARTRA---PAPPRPLPWPLPPEV 988412


  Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis
  /genome.fa
    Posted date:  Oct 18, 2013  5:53 PM
  Number of letters in database: 2,174,243,242
  Number of sequences in database:  14,644
  
Lambda     K      H
   0.312    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 266,998,775
Number of Sequences: 14644
Number of extensions: 3730020
Number of successful extensions: 11131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 230
Number of HSP's that attempted gapping in prelim test: 10259
Number of HSP's gapped (non-prelim): 1973
length of query: 122
length of database: 724,747,747
effective HSP length: 97
effective length of query: 25
effective length of database: 723,327,279
effective search space: 18083181975
effective search space used: 18083181975
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 68 (30.8 bits)