Find start end points: [409,60574][419,60604] Score 6325
Recovering alignment: Alignment recovered04] Explicit read off
genewise output
Score 18.25 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
Information
Name gi|397463559|gb|JH731942.1|:subseq(600000,155000) is longer than
allowed name block (15). Truncating
SPP00000065_2.0 410 SMQTVSGYTFR
++QT S YTFR
NIQTTSNYTFR
gi|397463559|gb60573 aacaaaatata
ataccgaactg
taaattcttca
//
>gi|397463559|gb|JH731942.1|:subseq(600000,155000).pep
NIQTTSNYTFR
//
>gi|397463559|gb|JH731942.1|:subseq(600000,155000).[60573:60605].sp
AATATACAAACAACTAGTAACTATACTTTCAGA
//
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise match 60573 60605 18.25 + . gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise cds 60573 60605 0.00 + 0 gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
//
Find start end points: [0,39427][469,88724] Score 283535
Recovering alignment: Alignment recovered Explicit read offfe 82%%
genewise output
Score 818.11 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
Information
Name gi|397463559|gb|JH731942.1|:subseq(600000,155000) is longer than
allowed name block (15). Truncating
SPP00000065_2.0 1 MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEK
MN E+F A ERLV+ AYVRQG + RR+HE +R LLE+
MNGENFGASERLVAAAYVRQGAQGRRAHELRLRALLEQ
gi|397463559|-115575 aaggatggagacggggtgccggcgccgcgccccgccgc
tagaatgcgagttcccatgagcagggcaatgtgcttaa
gccgcctccggggtgccggggggcccgcgccggggagg
Warning Error
Trying to paste a character into an unpasteable position [14,4] into
[13,6]
Warning Error
Unable to paste the word [115461:108686] into btcanvas
SPP00000065_2.0 39 GKCPENGWDESTLELFLHELAIMDSN
GKCPE+GWDEST+ELFLHELAIMDSN
GKCPEDGWDESTIELFLHELAIMDSN
gi|397463559|-115461 GTAACGG Intron 1 TAGgatcgggtggaaagctccgcgaagaa
<0-----[115461:10868-0>gagcaaggaagctatttaatcttaga
tgtcatagtatctactttatctgtcc
Warning Error
Trying to paste a character into an unpasteable position [14,4] into
[13,6]
Warning Error
Unable to paste the word [108530:104578] into btcanvas
SPP00000065_2.0 65 NFLGNCGVGEREGRVASALVARRHY
NFLGNCGVGEREGRVAS LVARRHY
NFLGNCGVGEREGRVASGLVARRHY R:R[agg]
gi|397463559|-108607 atcgatggggaggaggtgcggccctAGGTAAATC Intron 2
attgaggtgagaggtccgttcggaa <2-----[108530:104578
ttggtttgtggaaagaaattctgtc
SPP00000065_2.0 90 FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLA
+IHGIGRSGDISAVQPKAAGSSLLNK+TN +VLDIIKLA
LIHGIGRSGDISAVQPKAAGSSLLNKLTNLIVLDIIKLA
gi|397463559|-104580 TAGGtacgagatggatggccagggtactaacaatagcgaaacg
-2> ttagtggcgatcctacaccgcgttaatcattttattatc
gctacagatttttcgtaaattctgcatttgatgctaggt
Warning Error
Trying to paste a character into an unpasteable position [14,4] into
[13,6]
Warning Error
Unable to paste the word [104458:104365] into btcanvas
SPP00000065_2.0 130 VHTVANCFVVPMATGMSLTLCFL
V TV +CFVVPMATGMSLTLCFL
G:G[ggt] VRTVTSCFVVPMATGMSLTLCFL
gi|397463559|-104459 GGTAGGTG Intron 3 CAGGTgcagaattggcagagaacacttt
<1-----[104458:10436-1> tgctcggtttctccgtgtctgtt
cgagctttgttgaccgtacttca
SPP00000065_2.0 154 TLRHKRPKAKYIIWPRIDQKSCFKSMITA
TLRHKRPKAKYIIWPRIDQKSCFKSMITA
TLRHKRPKAKYIIWPRIDQKSCFKSMITA
gi|397463559|-104293 acccaacagataatccagcatttataaag
ctgaagcacaattgcgtaaacgtacttcc
aagcgaagaatttgatacgatctatgata
SPP00000065_2.0 183 FEPVVIENVLEGDELRTDLKAVE
FEPVVIEN+LE DELRTDL+ VE
G:G[ggt] FEPVVIENILENDELRTDLQGVE
gi|397463559|-104206 GGTAAGGG Intron 4 TAGGTtgcggagaatgaggccagccggg
<1-----[104205:98371-1> tactttaattaaaatgcatagta
tgtggagtaaattggcaccgtga
SPP00000065_2.0 207 AKVQELGPDCILCIHSTTSCFAPRVPD
AK+QELG + +LC+HSTTSCFAPRVPD
AKIQELGAENVLCVHSTTSCFAPRVPD R:R[aga]
gi|397463559|g-98299 gaacgcgggagctgctaatttgcagcgAGGTAAGTA Intron 5
cataatgcaattgtaccccgtccgtca <2-----[98216:92181]
tacggtgtatctttttatcctcagatc
SPP00000065_2.0 234 LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ
LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ
LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ
gi|397463559|g-92183 TAGAcggcggatgatgaccagaagtggcttataccacc
-2> taatcttgcaaatcattaacagtaccagtattaa
gaagtgtttttctcttcctatatgtaatgtccgg
SPP00000065_2.0 269 GARVGRIDAFVQSLDKNFMVPVGGAI
GARVGRIDAF+QSLDKNFMVPVGGAI
GARVGRIDAFIQSLDKNFMVPVGGAI
gi|397463559|g-92077 GTAAGAG Intron 6 TAGggcggaaggtacacgaatagcgggga
<0-----[92077:88917]-0>gcgtggtacttagtaaatttctggct
ttaataattccgcgcattgtaatatc
SPP00000065_2.0 295 IAGFNDSFIQEISKMYP RASASP
IAGFNDSFI+EISKMYP RASASP
IAGFNDSFIKEISKMYP G:G[gga] RASASP
gi|397463559|g-88838 aggtagttaagaaaatcGGTAAATT Intron 7 TAGGAagtgtc
tcgtaacttaatgatac <1-----[88786:88661]-1> gccccc
ttccttccaggctagta aaaatt
SPP00000065_2.0 319 SLDVLITLLSLGSNGYKKLLKERK EM
SLDV ITLLSLG+NGY++LLK+RK EM
SLDVFITLLSLGANGYRQLLKQRK EM
gi|397463559|g-88640 ttggtaacctcggagtccccacaaGTAAGCT Intron 8 CAGga
ctatttcttctgcagagattaaga<0-----[88568:68763]-0>at
catctttagaatatccagaaaaag ag
SPP00000065_2.0 345 FSYLSNQIKKLSEAYNERLLHTPHNPISL
FSYL++++KKL+E +NERLL TPHNPISL
FSYLTSELKKLAEIHNERLLDTPHNPISL
gi|397463559|g-68756 tttcaagcaatggacagactgaccacatt
tcatcgataatcataaagttaccaactct
tgttacgggggaacctgacgtaaccttaa
SPP00000065_2.0 374 MTLKTLDEHRDKAVTQLGSMLFT
M+LK LDEH D AVTQLGSMLFT
A:A[gcc] MSLKNLDEHSDTAVTQLGSMLFT
gi|397463559|g-68669 GGTAATTG Intron 9 CAGCCatcaacggcagaggaccgtacta
<1-----[68668:68052]-1> tctaataaagacctcatgctttc
ggagcatactctttaatatgtta
SPP00000065_2.0 398 RQVSGA VVPLGSMQTVSGYTFRG
RQVSGA VVP +QTV+ YTF+G
RQVSGA R:R[agg] VVPRNFQQTVNNYTFKG
gi|397463559|g-67980 acgtggAGGTGAGCA Intron 10 CAGGggccatccagaatatag
gatcgc <2-----[67960:66475]-2> ttcgataactaaactag
aattat gtcattgaagtctacac
SPP00000065_2.0 422 FMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESD
FMSH NNYPCAYLNAASAIGMK QDVD+F+KRL++CLK KE +K D
FMSHANNYPCAYLNAASAIGMKKQDVDMFLKRLNKCLKTFGKETNKGKD
gi|397463559|g-66422 tatcgaatctgtcaggtgagaaacgggatcaacaattaatgagaaagag
ttcacaaacgcatacccctgtaaaatatttagtaagtactgaacaagaa
tgttatcccttcctttaatcgagatgcgctaactgtggttaaaacaaac
//
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a A in phase 1 intron
Making a R in phase 2 intron
>gi|397463559|gb|JH731942.1|:subseq(600000,155000).pep
MNGENFGASERLVAAAYVRQGAQGRRAHELRLRALLEQGKCPEDGWDESTIELFLHELAI
MDSNNFLGNCGVGEREGRVASGLVARRHYRLIHGIGRSGDISAVQPKAAGSSLLNKLTNL
IVLDIIKLAGVRTVTSCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI
TAGFEPVVIENILENDELRTDLQGVEAKIQELGAENVLCVHSTTSCFAPRVPDRLEELAV
ICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFIQSLDKNFMVPVGGAIIAGFND
SFIKEISKMYPGRASASPSLDVFITLLSLGANGYRQLLKQRKEMFSYLTSELKKLAEIHN
ERLLDTPHNPISLAMSLKNLDEHSDTAVTQLGSMLFTRQVSGARVVPRNFQQTVNNYTFK
GFMSHANNYPCAYLNAASAIGMKKQDVDMFLKRLNKCLKTFGKETNKGKD
//
>gi|397463559|gb|JH731942.1|:subseq(600000,155000).[115575:66274].sp
ATGAACGGCGAGAACTTCGGTGCCAGCGAGAGGCTGGTGGCTGCGGCCTACGTGCGGCAG
GGGGCGCAGGGCCGCCGCGCGCACGAGCTCCGCCTGCGGGCGCTGCTAGAGCAGGGTAAG
TGTCCCGAAGATGGATGGGATGAAAGTACCATTGAACTCTTTCTTCATGAACTTGCCATT
ATGGATAGCAACAATTTTCTGGGGAATTGTGGTGTGGGTGAGAGGGAAGGAAGAGTGGCA
TCAGGACTTGTTGCCCGTCGGCATTACAGGTTGATCCATGGAATCGGAAGGTCAGGTGAT
ATTTCTGCTGTCCAGCCTAAAGCAGCAGGTTCTAGCCTTTTGAACAAACTTACTAATTTG
ATAGTTCTGGACATTATAAAGCTGGCTGGTGTCCGGACAGTGACCAGTTGTTTTGTGGTT
CCTATGGCAACCGGCATGAGTCTAACCCTTTGTTTCTTAACACTACGGCACAAGAGACCA
AAGGCAAAATATATTATTTGGCCACGTATAGACCAGAAATCTTGCTTTAAATCTATGATA
ACTGCAGGTTTTGAGCCTGTGGTGATAGAGAATATATTAGAAAATGATGAGCTGCGCACA
GACCTCCAGGGTGTGGAAGCTAAAATCCAGGAGCTTGGGGCTGAAAATGTCCTTTGTGTT
CATTCTACAACTTCCTGCTTTGCCCCAAGGGTACCTGACAGACTGGAAGAACTGGCTGTG
ATTTGTGCTAATTATGACATTCCCCATATTGTCAACAATGCATATGGAGTTCAGTCTTCA
AAATGTATGCATCTCATCCAGCAGGGTGCTCGAGTAGGTAGAATAGATGCTTTCATCCAG
AGCCTGGACAAAAATTTTATGGTTCCAGTAGGTGGAGCTATCATTGCTGGCTTCAATGAT
TCCTTCATAAAGGAGATCAGTAAAATGTATCCAGGAAGAGCATCAGCATCTCCTTCCTTA
GATGTCTTTATTACTCTACTGTCACTAGGTGCAAATGGCTACCGACAGCTACTAAAACAA
AGAAAGGAAATGTTTTCGTATCTTACAAGCGAGCTGAAGAAGTTGGCAGAAATCCACAAT
GAGAGACTCTTGGATACACCACACAACCCTATTTCATTAGCCATGTCGCTAAAGAACCTA
GATGAACACAGTGACACTGCTGTTACACAACTTGGATCTATGCTTTTTACAAGACAAGTT
TCTGGAGCTAGGGTGGTTCCCCGAAATTTTCAGCAAACAGTGAATAACTATACATTCAAA
GGCTTTATGTCTCATGCAAATAACTACCCCTGTGCTTACCTCAATGCTGCTTCAGCAATT
GGCATGAAAAAGCAAGATGTGGACATGTTCCTTAAAAGACTCAATAAGTGTTTGAAGACT
TTTGGAAAAGAAACAAACAAAGGAAAAGAC
//
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise match 115575 66276 818.11 - . gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise cds 115575 115462 0.00 - 0 gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise intron 115461 108686 0.00 - . gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise cds 108685 108531 0.00 - 0 gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise intron 108530 104578 0.00 - . gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise cds 104577 104459 0.00 - 1 gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise intron 104458 104365 0.00 - . gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise cds 104364 104206 0.00 - 2 gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise intron 104205 98371 0.00 - . gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise cds 98370 98217 0.00 - 2 gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise intron 98216 92181 0.00 - . gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise cds 92180 92078 0.00 - 1 gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise intron 92077 88917 0.00 - . gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise cds 88916 88787 0.00 - 0 gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise intron 88786 88661 0.00 - . gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise cds 88660 88569 0.00 - 2 gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise intron 88568 68763 0.00 - . gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise cds 68762 68669 0.00 - 0 gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise intron 68668 68052 0.00 - . gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise cds 68051 67961 0.00 - 2 gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise intron 67960 66475 0.00 - . gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
gi|397463559|gb|JH731942.1|:subseq(600000,155000) GeneWise cds 66474 66276 0.00 - 1 gi|397463559|gb|JH731942.1|:subseq(600000,155000)-genewise-prediction-1
//