TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000038_2.0 # Protein # Glutathione peroxidase 6 (GPx6) #
Human (Homo sapiens)
(221 letters)
Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis/g
enome.fa
14,644 sequences; 2,174,243,242 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|397463514|gb|JH731987.1| Alligator mississippiensis unplaced ... 112 1e-23
gi|397464367|gb|JH731134.1| Alligator mississippiensis unplaced ... 103 4e-21
gi|397459705|gb|JH735796.1| Alligator mississippiensis unplaced ... 98 3e-19
gi|397461646|gb|JH733855.1| Alligator mississippiensis unplaced ... 55 2e-06
gi|397460984|gb|JH734517.1| Alligator mississippiensis unplaced ... 50 5e-05
gi|397462837|gb|JH732664.1| Alligator mississippiensis unplaced ... 40 5e-04
gi|397458980|gb|JH736521.1| Alligator mississippiensis unplaced ... 34 4.9
gi|397459392|gb|JH736109.1| Alligator mississippiensis unplaced ... 33 8.4
>gi|397463514|gb|JH731987.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-1586, whole genome shotgun sequence
Length = 466719
Score = 112 bits (280), Expect = 1e-23
Identities = 57/124 (45%), Positives = 77/124 (62%), Gaps = 1/124 (0%)
Frame = +3
Query: 99 FPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTF-LKNSCP 157
FP G +E G +E L + C S V + G+ G +F L+NSCP
Sbjct: 210225 FPALPEG*RERGEGTEGLHLPQGPCTPSSHV------QAGETGGHGGDACPSFPLQNSCP 210386
Query: 158 PTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQ 217
P + G +LFWEP+K+HDI+WNFEKFLVGPDGVPVM W+H+A ++TVK+DI+EY+K
Sbjct: 210387 PVVENFGDPKKLFWEPLKIHDIKWNFEKFLVGPDGVPVMRWYHRANIATVKNDIMEYMKA 210566
Query: 218 FNTH 221
+ H
Sbjct: 210567 QHPH 210578
Score = 95.1 bits (235), Expect = 2e-18
Identities = 55/126 (43%), Positives = 64/126 (50%), Gaps = 46/126 (36%)
Frame = +1
Query: 79 YPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLK------------------ 120
+ ELNALQ EL +G+++L FP NQFGKQEPG N+EIL LK
Sbjct: 209929 HAELNALQSELGPYGLVILGFPSNQFGKQEPGQNAEILPALK*VPEPGQPGPGWGLPRTG 210108
Query: 121 ----------------------------YVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFL 152
YV PG GF P+FQLF+KGDVNGEKEQKV+TFL
Sbjct: 210109 PYMGPAPTCTGRGWKGARHPLLPFHFFRYVRPGGGFAPNFQLFQKGDVNGEKEQKVYTFL 210288
Query: 153 KNSCPP 158
K P
Sbjct: 210289 KVRAHP 210306
Score = 72.8 bits (177), Expect = 1e-11
Identities = 32/56 (57%), Positives = 43/56 (76%)
Frame = +1
Query: 24 KPQNRKVDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGLAAQY 79
+P +V+C V GT+Y+YGALT++GEEY+ FK++AGK +LFVNVA Y GL QY
Sbjct: 209293 RPAVFQVNCYSNVGGTVYDYGALTIDGEEYVPFKRYAGKMILFVNVATY*GLTMQY 209460
>gi|397464367|gb|JH731134.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-234, whole genome shotgun sequence
Length = 432364
Score = 103 bits (258), Expect = 4e-21
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 4/114 (3%)
Frame = +1
Query: 108 EPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSD----LL 163
E TN EILL LKYV PG+G+ P+F +FEK DVNG +FTFLK + P D L+
Sbjct: 176959 ENATNDEILLSLKYVRPGNGYEPNFTMFEKCDVNGANAHPLFTFLKEALPFPHDDPVALM 177138
Query: 164 GSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQ 217
+ + W P+ +DI WNFEKFL+GPDG+P + + ++ DI + L+Q
Sbjct: 177139 TNPQYIIWSPVCRNDISWNFEKFLIGPDGIPFKRYSRRFETIKIQDDIEKLLQQ 177300
Score = 50.8 bits (120), Expect = 4e-05
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +3
Query: 45 ALTLNGEEYIQFKQFAGKHVLFVNVAAYXGLAAQ-YPELNALQEELKNFGVIVLAFPCNQ 103
A L G E + G+ +L NVA+ G A+ + +LN LQE G++VL FPCNQ
Sbjct: 173979 ARPLGGGEPLALGSLLGRVLLVSNVASL*GTTARDFTQLNELQERYGPRGLLVLGFPCNQ 174158
Query: 104 FGKQEPG 110
FG Q PG
Sbjct: 174159 FGHQVPG 174179
>gi|397459705|gb|JH735796.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-7762, whole genome shotgun sequence
Length = 1008463
Score = 97.8 bits (242), Expect = 3e-19
Identities = 58/128 (45%), Positives = 70/128 (54%), Gaps = 4/128 (3%)
Frame = -3
Query: 93 GVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFL 152
GV VL+ P QE TN EIL LKYV PG GF P+F LF+K VNG+ VF +L
Sbjct: 890453 GVFVLSCPL-----QENCTNEEILNSLKYVRPGGGFEPNFTLFQKCQVNGQDTHPVFAYL 890289
Query: 153 KNSCPPTSD----LLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVK 208
K P D LL L W P++ D+ WNFEKFLVGP+G P + + S V+
Sbjct: 890288 KAHLPAPVDNPAALLTDPRFLVWSPVQRADLTWNFEKFLVGPEGEPFKRYSPKFQTSHVE 890109
Query: 209 SDILEYLK 216
DI LK
Sbjct: 890108 PDIQRLLK 890085
Score = 53.1 bits (126), Expect = 8e-06
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = -3
Query: 36 VTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGLAAQ-YPELNALQEELKNFGV 94
+ + Y+ A+TL GE+ + F F G+ VL NVA+ G + Y +LN LQ +
Sbjct: 892058 IAKSFYDLSAITLQGEK-VDFNNFRGRVVLIENVASL*GTTVRDYTQLNQLQARYPR-RL 891885
Query: 95 IVLAFPCNQFGKQEPG 110
+VL FPCNQFG Q G
Sbjct: 891884 VVLGFPCNQFGYQVSG 891837
>gi|397461646|gb|JH733855.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-4572, whole genome shotgun sequence
Length = 115602
Score = 55.5 bits (132), Expect = 2e-06
Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +2
Query: 65 LFVNVAAYXGLA-AQYPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVC 123
L VNVA+ G + Y L LQ +L + VLAFPCNQFG+QEP T+ EI +
Sbjct: 12230 LVVNVASECGYTDSHYKALQQLQRDLGPYHFNVLAFPCNQFGQQEPDTDKEIENFAR--- 12400
Query: 124 PGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSC 156
+ +F LF K V+G F +L C
Sbjct: 12401 --KTYGATFPLFSKTAVSGAGANAAFKYLIGEC 12493
>gi|397460984|gb|JH734517.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-5685, whole genome shotgun sequence
Length = 643167
Score = 50.4 bits (119), Expect = 5e-05
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Frame = -3
Query: 62 KHVLFVNVAAYXGLAAQYPELN--ALQEELKNFG---VIVLAFPCNQFGKQEPGTNSEIL 116
K L VNVA+Y Q+ + N ALQE + FG VLAFPCNQFG+ EP ++ EI
Sbjct: 563947 KASLVVNVASY----CQHTDKNYIALQELHREFGPSHFTVLAFPCNQFGESEPSSSQEIE 563780
Query: 117 LGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFL 152
K + +F +F K + G + + F FL
Sbjct: 563779 SFAK-----GNYGVTFPIFHKIKILGSEAEPAFKFL 563687
>gi|397462837|gb|JH732664.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-2624, whole genome shotgun sequence
Length = 587981
Score = 39.7 bits (91), Expect(2) = 5e-04
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Frame = -1
Query: 37 TGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGLA-AQYPELNALQEELKNFGVI 95
T +IYE ++G ++ +++ G + N+A+ G Y +L + +
Sbjct: 271811 TKSIYESHVKDIDGS-HVSLEKYWGYACIITNIASK*GKTDINYTQLVDMYAI*TERCLR 271635
Query: 96 VLAFPCNQFGKQEPGTNSEI-----LLGLKY 121
+LAFPCNQF KQ PG N++I G+KY
Sbjct: 271634 ILAFPCNQFKKQ*PGNNAQIKAFVASYGMKY 271542
Score = 26.6 bits (57), Expect(2) = 5e-04
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 135 FEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDG 192
F K DV G+ ++ +L+ P LG++ I+WNF KFL+ +G
Sbjct: 271531 FSKTDVYGDNTLPLWKWLQEQ-PKGRGTLGNA------------IKWNFTKFLIDNEG 271397
>gi|397458980|gb|JH736521.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-8967, whole genome shotgun sequence
Length = 861763
Score = 33.9 bits (76), Expect = 4.9
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 61 GKHVLFVNVAAYXGLA-AQYPELNALQEELKNFGVIVLAFPCNQFGKQEPG 110
G+ + NVA+ G Y + + G+ +LAFPCNQFGKQ G
Sbjct: 287896 GQVCIITNVASK*GKTDVNYTQFVDMYARYAERGLRILAFPCNQFGKQVGG 287744
>gi|397459392|gb|JH736109.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-8285, whole genome shotgun sequence
Length = 876837
Score = 33.1 bits (74), Expect = 8.4
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +3
Query: 109 PGTNSEILLGLKYVCPGSGFVPSFQLF 135
PGTNSE+L GL C F+PS Q F
Sbjct: 467547 PGTNSELLFGLGDCCNSEHFLPSVQKF 467627
Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis
/genome.fa
Posted date: Oct 18, 2013 5:53 PM
Number of letters in database: 2,174,243,242
Number of sequences in database: 14,644
Lambda K H
0.322 0.139 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 641,851,359
Number of Sequences: 14644
Number of extensions: 10363099
Number of successful extensions: 40023
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 367
Number of HSP's that attempted gapping in prelim test: 37414
Number of HSP's gapped (non-prelim): 7639
length of query: 221
length of database: 724,747,747
effective HSP length: 124
effective length of query: 97
effective length of database: 722,931,891
effective search space: 70124393427
effective search space used: 70124393427
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 73 (32.7 bits)