
genewise output
Score 212.52 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000118_1.0    1 MSGEPAPVSVVPPPGEVEAGSGVHIVVEY                     
                     MSGEP P+S+ PPPGEVE GSGV IVVEY                     
                     MSGEPGPISLAPPPGEVEPGSGVRIVVEY                     
gi|408541726|g-51085 aaggcgcattgcccggggcgaggcagggt                     
                     tggacgctctccccgatacgggtgtttaa                     
                     gtgacacacagctcgggagctgcccgggc                     


SPP00000118_1.0   30                           KPCGFEATYLELASAVKEEYPGI 
                                               +PCGFEATYLELASAVKE+YPGI 
                                C:C[tgt]       EPCGFEATYLELASAVKEQYPGI 
gi|408541726|g-50998 TGGTGAGCA  Intron 1   CAGTgctgtggatcgcgaggagctcga 
                       <2-----[50996:50907]-2> acggtaccatatcgctaaaacgt 
                                               actctggccggggtgggggttcc 


SPP00000118_1.0   54 EIESRLGGT                          AFEIEINGQLVFSK 
                     EIESRLGGT                          AFEIEINGQLVFSK 
                     EIESRLGGT          G:G[ggg]        AFEIEINGQLVFSK 
gi|408541726|g-50836 gagtccggaGGTGAGGC  Intron 2   CAGGGgtgagaagctgtta 
                     atacgtggc <1-----[50808:50242]-1>  ctatatagatttca 
                     gcggcggta                          ctgagctagggtcg 


SPP00000118_1.0   78 LENGGFPYEKD                       LMEAIRRASNGEPVE 
                     LENGGFPYEKD                       L+EAIRRASNGEP+E 
                     LENGGFPYEKD                       LIEAIRRASNGEPLE 
gi|408541726|g-50197 cgaggtctgagGTGAGTA  Intron 3   TAGcaggacagaaggccg 
                     taaggtcaaaa<0-----[50164:50081]-0>ttactggcgagacta 
                     agtgctttaat                       ccgctcactcaatga 


SPP00000118_1.0  104 KITNSRPPCVIL                                      
                     KITNSRPPCVIL                                      
                     KITNSRPPCVIL                                      
gi|408541726|g-50035 aaaaaccctgac                                      
                     atcaggccgttt                                      
                     gccccctctccg                                      


//
Making a C in phase 2 intron
Making a G in phase 1 intron
>gi|408541726|gb|JH947206.1|:subseq(13264141,100905).pep
MSGEPGPISLAPPPGEVEPGSGVRIVVEYCEPCGFEATYLELASAVKEQYPGIEIESRLG
GTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRASNGEPLEKITNSRPPCVIL
//
>gi|408541726|gb|JH947206.1|:subseq(13264141,100905).[51085:49998].sp
ATGAGTGGGGAACCCGGACCCATATCCTTAGCGCCCCCTCCCGGGGAGGTGGAACCGGGC
AGTGGGGTCCGCATCGTGGTGGAGTACTGTGAACCCTGTGGCTTTGAGGCGACCTACCTG
GAGCTGGCGAGTGCGGTGAAGGAGCAGTATCCTGGCATCGAGATCGAGTCGCGCCTGGGG
GGTACAGGGGCCTTTGAGATAGAGATCAATGGACAGTTGGTGTTTTCCAAGCTAGAGAAT
GGGGGCTTTCCTTATGAAAAAGATCTCATCGAGGCCATTCGCAGAGCCAGTAACGGAGAA
CCTCTGGAAAAGATCACCAACAGCCGCCCTCCCTGTGTCATCCTG
//
gi|408541726|gb|JH947206.1|:subseq(13264141,100905)	GeneWise	match	51085	50000	212.52	-	.	gi|408541726|gb|JH947206.1|:subseq(13264141,100905)-genewise-prediction-1
gi|408541726|gb|JH947206.1|:subseq(13264141,100905)	GeneWise	cds	51085	50997	0.00	-	0	gi|408541726|gb|JH947206.1|:subseq(13264141,100905)-genewise-prediction-1
gi|408541726|gb|JH947206.1|:subseq(13264141,100905)	GeneWise	intron	50996	50907	0.00	-	.	gi|408541726|gb|JH947206.1|:subseq(13264141,100905)-genewise-prediction-1
gi|408541726|gb|JH947206.1|:subseq(13264141,100905)	GeneWise	cds	50906	50809	0.00	-	1	gi|408541726|gb|JH947206.1|:subseq(13264141,100905)-genewise-prediction-1
gi|408541726|gb|JH947206.1|:subseq(13264141,100905)	GeneWise	intron	50808	50242	0.00	-	.	gi|408541726|gb|JH947206.1|:subseq(13264141,100905)-genewise-prediction-1
gi|408541726|gb|JH947206.1|:subseq(13264141,100905)	GeneWise	cds	50241	50165	0.00	-	2	gi|408541726|gb|JH947206.1|:subseq(13264141,100905)-genewise-prediction-1
gi|408541726|gb|JH947206.1|:subseq(13264141,100905)	GeneWise	intron	50164	50081	0.00	-	.	gi|408541726|gb|JH947206.1|:subseq(13264141,100905)-genewise-prediction-1
gi|408541726|gb|JH947206.1|:subseq(13264141,100905)	GeneWise	cds	50080	50000	0.00	-	0	gi|408541726|gb|JH947206.1|:subseq(13264141,100905)-genewise-prediction-1
//
