_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-70
 Query name: gi|281371497|ref|NP_001163895.1| selenoprotein X, 1 [Equus caballus]
 Query range: 1-116  (total 116)

 Target: /data/www-rg/seblastian_results/423622202/tempfiles/temptarget.fasta
 Chromosome: gi|408541663|gb|JH947269.1|:subseq_3357160,100344_ Strand: +
 Positions:
 -Exon 1  50000        50347

 Redox box: no

Query   MSFCSFFGGEIFQNHFEPGIYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRPEALKVSCGKCGNGLGHEFLNDGPKRGQSRFUIFSSS
        ||||||||||//|||||||/||||||||||||| ||||||||||||||||| ||| ||||/||||||||||||||/||||||||||||||||||||||||
Target  MSFCSFFGGEVYQNHFEPGVYVCAKCGYELFSSHSKYAHSSPWPAFTETIHRDSVVKRPENNRPEALKVSCGKCGHGLGHEFLNDGPKRGQSRFUIFSSS
        atttattggggtcactgcggtgtgatgtgcttactatgcttctcgtagaacagaggaccgaaccggtagttgatgcgcgcgtcaggcacgctcttataat
        tctggttggataaaatacgtatgcaggaattcgacaacacccgcctcactagagttagcaaagcactatcggaggagtgaattaagcaggacgtgttggc
        gtcccctgcgtcgcctggtgcgtcatctggcgcccgtgcctcgggccgcccaccgcgcggctatataggctaatccggctgtgctccggagcacaatccg
                                                                                                      *     

Query   LKFVPKGKESSASQGQ
        |||/|||||/||| |/
Target  LKFIPKGKETSASLGK
        catacagagatgtcga
        tattcagaacccctga
        ggcccacgattccggg
                        
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 298 ; UGA-SECIS: 361

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|408541663|gb|JH947269.1|:subseq_3357160,100344_ Strand = + Positions = 50646 - 50717
 Found by:  Infernal (score=34.34) Covels (score=22.72)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -18.63

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({((((((---....{[[{{(((((((((.................)))))))))}}]]}..--..-.))))))}).
 target  UCUGGUCAC---UGAAUGAUUUGCUCUGGUCAAACCCUUCCAGGCCCGCCAGAGUGCUGAUAA--CU-CGUGACCUGC
                         ****           ^^^                       ****                 